EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000003076 (Gene tree)
Gene ID: 106932988
Gene Symbol: xrn1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 15827 bases
Position: chrKQ552549.1:129239-145065
Accession: 106932988
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000002065	XRN_N	PF03159.18	1.8e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000013145	-	5137	XM_015011982	ENSPMEP00000002065	1585 (aa)	XP_014867468	-

Gene Model

Click here to download ENSPMEG00000003076's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000003076's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000003076	xrn1	95	64.457	ENSG00000114127	XRN1	96	95.146	Homo_sapiens
ENSPMEG00000003076	xrn1	89	88.462	ENSAPOG00000000622	xrn1	94	85.294	Acanthochromis_polyacanthus
ENSPMEG00000003076	xrn1	95	63.228	ENSAMEG00000012538	XRN1	89	63.094	Ailuropoda_melanoleuca
ENSPMEG00000003076	xrn1	95	83.178	ENSACIG00000001057	xrn1	87	85.191	Amphilophus_citrinellus
ENSPMEG00000003076	xrn1	95	83.641	ENSAOCG00000014097	xrn1	89	83.575	Amphiprion_ocellaris
ENSPMEG00000003076	xrn1	95	85.193	ENSAPEG00000006620	xrn1	92	85.126	Amphiprion_percula
ENSPMEG00000003076	xrn1	92	83.307	ENSATEG00000009752	xrn1	88	83.150	Anabas_testudineus
ENSPMEG00000003076	xrn1	93	63.712	ENSAPLG00000004905	XRN1	89	63.263	Anas_platyrhynchos
ENSPMEG00000003076	xrn1	95	63.277	ENSACAG00000004985	XRN1	89	63.191	Anolis_carolinensis
ENSPMEG00000003076	xrn1	95	64.867	ENSANAG00000029013	XRN1	99	73.592	Aotus_nancymaae
ENSPMEG00000003076	xrn1	95	85.193	ENSACLG00000004806	xrn1	88	84.993	Astatotilapia_calliptera
ENSPMEG00000003076	xrn1	95	70.961	ENSAMXG00000019370	xrn1	95	97.087	Astyanax_mexicanus
ENSPMEG00000003076	xrn1	95	64.508	ENSBTAG00000011524	XRN1	88	63.701	Bos_taurus
ENSPMEG00000003076	xrn1	75	38.073	WBGene00012730	xrn-1	76	63.003	Caenorhabditis_elegans
ENSPMEG00000003076	xrn1	95	64.679	ENSCJAG00000001872	XRN1	92	64.189	Callithrix_jacchus
ENSPMEG00000003076	xrn1	95	64.786	ENSCAFG00000007783	XRN1	88	64.466	Canis_familiaris
ENSPMEG00000003076	xrn1	95	63.740	ENSCAFG00020009120	XRN1	99	75.868	Canis_lupus_dingo
ENSPMEG00000003076	xrn1	95	63.665	ENSCHIG00000019192	XRN1	89	63.514	Capra_hircus
ENSPMEG00000003076	xrn1	95	64.481	ENSTSYG00000002705	XRN1	89	64.151	Carlito_syrichta
ENSPMEG00000003076	xrn1	53	86.047	ENSCAPG00000004604	-	94	86.047	Cavia_aperea
ENSPMEG00000003076	xrn1	95	64.809	ENSCCAG00000034800	XRN1	99	77.813	Cebus_capucinus
ENSPMEG00000003076	xrn1	95	64.809	ENSCATG00000041794	XRN1	89	64.295	Cercocebus_atys
ENSPMEG00000003076	xrn1	95	64.063	ENSCLAG00000001451	XRN1	99	78.515	Chinchilla_lanigera
ENSPMEG00000003076	xrn1	95	64.809	ENSCSAG00000011265	XRN1	88	64.295	Chlorocebus_sabaeus
ENSPMEG00000003076	xrn1	75	50.301	ENSCSAVG00000008584	-	93	49.802	Ciona_savignyi
ENSPMEG00000003076	xrn1	95	64.938	ENSCANG00000037495	XRN1	99	77.813	Colobus_angolensis_palliatus
ENSPMEG00000003076	xrn1	95	63.395	ENSCGRG00001019411	Xrn1	99	77.971	Cricetulus_griseus_chok1gshd
ENSPMEG00000003076	xrn1	95	63.395	ENSCGRG00000012464	Xrn1	99	77.971	Cricetulus_griseus_crigri
ENSPMEG00000003076	xrn1	95	73.054	ENSCSEG00000021285	xrn1	94	98.077	Cynoglossus_semilaevis
ENSPMEG00000003076	xrn1	72	86.067	ENSCVAG00000013089	xrn1	99	89.418	Cyprinodon_variegatus
ENSPMEG00000003076	xrn1	95	73.777	ENSDARG00000091652	xrn1	98	81.646	Danio_rerio
ENSPMEG00000003076	xrn1	95	64.226	ENSDORG00000013833	Xrn1	89	64.121	Dipodomys_ordii
ENSPMEG00000003076	xrn1	74	41.549	FBgn0020261	pcm	71	41.465	Drosophila_melanogaster
ENSPMEG00000003076	xrn1	79	69.369	ENSETEG00000003978	XRN1	76	70.248	Echinops_telfairi
ENSPMEG00000003076	xrn1	79	83.333	ENSEASG00005002687	XRN1	99	78.199	Equus_asinus_asinus
ENSPMEG00000003076	xrn1	95	64.504	ENSECAG00000008301	XRN1	88	64.332	Equus_caballus
ENSPMEG00000003076	xrn1	78	71.409	ENSEEUG00000011323	XRN1	58	71.177	Erinaceus_europaeus
ENSPMEG00000003076	xrn1	95	74.529	ENSELUG00000000169	xrn1	89	73.990	Esox_lucius
ENSPMEG00000003076	xrn1	95	61.240	ENSFCAG00000027589	XRN1	99	79.521	Felis_catus
ENSPMEG00000003076	xrn1	95	64.277	ENSFALG00000007021	XRN1	89	63.659	Ficedula_albicollis
ENSPMEG00000003076	xrn1	95	63.625	ENSFDAG00000020494	XRN1	99	78.199	Fukomys_damarensis
ENSPMEG00000003076	xrn1	84	74.386	ENSGMOG00000006396	xrn1	78	75.041	Gadus_morhua
ENSPMEG00000003076	xrn1	95	64.205	ENSGALG00000002706	XRN1	89	64.201	Gallus_gallus
ENSPMEG00000003076	xrn1	95	79.035	ENSGACG00000014328	xrn1	89	78.714	Gasterosteus_aculeatus
ENSPMEG00000003076	xrn1	95	63.990	ENSGAGG00000017535	XRN1	94	63.927	Gopherus_agassizii
ENSPMEG00000003076	xrn1	95	64.744	ENSGGOG00000008047	XRN1	89	64.295	Gorilla_gorilla
ENSPMEG00000003076	xrn1	95	82.557	ENSHBUG00000005908	xrn1	96	82.218	Haplochromis_burtoni
ENSPMEG00000003076	xrn1	95	63.752	ENSHGLG00000014476	XRN1	99	77.883	Heterocephalus_glaber_female
ENSPMEG00000003076	xrn1	95	63.752	ENSHGLG00100015130	XRN1	99	77.883	Heterocephalus_glaber_male
ENSPMEG00000003076	xrn1	89	83.048	ENSHCOG00000014062	xrn1	88	83.048	Hippocampus_comes
ENSPMEG00000003076	xrn1	95	72.668	ENSIPUG00000015229	xrn1	89	72.470	Ictalurus_punctatus
ENSPMEG00000003076	xrn1	95	63.878	ENSSTOG00000013552	XRN1	99	77.567	Ictidomys_tridecemlineatus
ENSPMEG00000003076	xrn1	93	63.442	ENSJJAG00000010863	Xrn1	99	76.974	Jaculus_jaculus
ENSPMEG00000003076	xrn1	95	81.752	ENSKMAG00000021356	xrn1	95	85.325	Kryptolebias_marmoratus
ENSPMEG00000003076	xrn1	95	80.092	ENSLBEG00000018656	xrn1	97	99.029	Labrus_bergylta
ENSPMEG00000003076	xrn1	95	65.140	ENSLACG00000009020	XRN1	89	64.736	Latimeria_chalumnae
ENSPMEG00000003076	xrn1	95	69.413	ENSLOCG00000007944	xrn1	90	69.334	Lepisosteus_oculatus
ENSPMEG00000003076	xrn1	67	73.233	ENSLAFG00000015426	XRN1	99	73.271	Loxodonta_africana
ENSPMEG00000003076	xrn1	95	64.809	ENSMFAG00000032599	XRN1	89	64.295	Macaca_fascicularis
ENSPMEG00000003076	xrn1	95	64.809	ENSMMUG00000014038	XRN1	89	64.295	Macaca_mulatta
ENSPMEG00000003076	xrn1	95	64.744	ENSMNEG00000034217	XRN1	89	64.230	Macaca_nemestrina
ENSPMEG00000003076	xrn1	89	86.107	ENSMAMG00000013219	xrn1	92	87.185	Mastacembelus_armatus
ENSPMEG00000003076	xrn1	95	85.060	ENSMZEG00005015099	xrn1	88	84.861	Maylandia_zebra
ENSPMEG00000003076	xrn1	93	62.660	ENSMGAG00000006333	XRN1	89	62.804	Meleagris_gallopavo
ENSPMEG00000003076	xrn1	95	64.874	ENSMICG00000048948	XRN1	96	95.146	Microcebus_murinus
ENSPMEG00000003076	xrn1	61	78.041	ENSMOCG00000008665	Xrn1	99	78.041	Microtus_ochrogaster
ENSPMEG00000003076	xrn1	95	64.756	ENSMODG00000021236	XRN1	88	64.886	Monodelphis_domestica
ENSPMEG00000003076	xrn1	95	79.062	ENSMALG00000004098	xrn1	89	79.062	Monopterus_albus
ENSPMEG00000003076	xrn1	90	78.254	MGP_CAROLIEiJ_G0032535	Xrn1	100	90.000	Mus_caroli
ENSPMEG00000003076	xrn1	95	63.410	ENSMUSG00000032410	Xrn1	100	90.000	Mus_musculus
ENSPMEG00000003076	xrn1	95	63.312	MGP_PahariEiJ_G0015404	Xrn1	100	90.000	Mus_pahari
ENSPMEG00000003076	xrn1	95	63.474	MGP_SPRETEiJ_G0033678	Xrn1	100	90.000	Mus_spretus
ENSPMEG00000003076	xrn1	95	64.626	ENSMPUG00000012040	XRN1	88	64.346	Mustela_putorius_furo
ENSPMEG00000003076	xrn1	95	63.412	ENSMLUG00000016885	XRN1	89	63.198	Myotis_lucifugus
ENSPMEG00000003076	xrn1	61	73.701	ENSNGAG00000023964	Xrn1	99	73.693	Nannospalax_galili
ENSPMEG00000003076	xrn1	95	64.355	ENSNLEG00000004726	XRN1	89	63.842	Nomascus_leucogenys
ENSPMEG00000003076	xrn1	56	95.876	ENSMEUG00000014473	-	52	96.117	Notamacropus_eugenii
ENSPMEG00000003076	xrn1	66	69.343	ENSOPRG00000007337	-	55	69.343	Ochotona_princeps
ENSPMEG00000003076	xrn1	95	85.195	ENSONIG00000016673	xrn1	99	84.997	Oreochromis_niloticus
ENSPMEG00000003076	xrn1	86	61.827	ENSOANG00000006735	XRN1	88	60.994	Ornithorhynchus_anatinus
ENSPMEG00000003076	xrn1	95	64.046	ENSOCUG00000001861	XRN1	89	63.141	Oryctolagus_cuniculus
ENSPMEG00000003076	xrn1	95	83.189	ENSORLG00000013005	xrn1	87	82.857	Oryzias_latipes
ENSPMEG00000003076	xrn1	95	83.056	ENSORLG00020005559	xrn1	88	82.724	Oryzias_latipes_hni
ENSPMEG00000003076	xrn1	95	82.326	ENSORLG00015022523	xrn1	93	78.417	Oryzias_latipes_hsok
ENSPMEG00000003076	xrn1	95	83.322	ENSOMEG00000015397	xrn1	86	87.305	Oryzias_melastigma
ENSPMEG00000003076	xrn1	95	63.312	ENSOGAG00000000170	XRN1	88	62.987	Otolemur_garnettii
ENSPMEG00000003076	xrn1	95	64.637	ENSOARG00000006343	XRN1	88	64.355	Ovis_aries
ENSPMEG00000003076	xrn1	95	64.671	ENSPPAG00000010180	XRN1	89	64.221	Pan_paniscus
ENSPMEG00000003076	xrn1	95	64.854	ENSPPRG00000007125	XRN1	89	64.637	Panthera_pardus
ENSPMEG00000003076	xrn1	95	64.919	ENSPTIG00000021081	XRN1	89	64.637	Panthera_tigris_altaica
ENSPMEG00000003076	xrn1	95	64.671	ENSPTRG00000015482	XRN1	89	64.221	Pan_troglodytes
ENSPMEG00000003076	xrn1	95	64.809	ENSPANG00000010638	XRN1	89	64.295	Papio_anubis
ENSPMEG00000003076	xrn1	95	64.418	ENSPSIG00000018050	XRN1	89	64.127	Pelodiscus_sinensis
ENSPMEG00000003076	xrn1	61	85.799	ENSPMGG00000002648	xrn1	99	86.212	Periophthalmus_magnuspinnatus
ENSPMEG00000003076	xrn1	61	77.567	ENSPEMG00000020610	Xrn1	99	77.813	Peromyscus_maniculatus_bairdii
ENSPMEG00000003076	xrn1	70	49.038	ENSPMAG00000002975	xrn1	90	77.011	Petromyzon_marinus
ENSPMEG00000003076	xrn1	95	65.483	ENSPCIG00000028735	XRN1	99	78.006	Phascolarctos_cinereus
ENSPMEG00000003076	xrn1	95	99.201	ENSPFOG00000013932	xrn1	97	99.201	Poecilia_formosa
ENSPMEG00000003076	xrn1	95	98.933	ENSPLAG00000021653	xrn1	97	98.933	Poecilia_latipinna
ENSPMEG00000003076	xrn1	95	97.935	ENSPREG00000021147	xrn1	88	97.935	Poecilia_reticulata
ENSPMEG00000003076	xrn1	95	64.744	ENSPPYG00000014172	XRN1	88	64.295	Pongo_abelii
ENSPMEG00000003076	xrn1	93	60.396	ENSPCAG00000005638	XRN1	96	60.106	Procavia_capensis
ENSPMEG00000003076	xrn1	95	64.717	ENSPCOG00000013089	XRN1	99	77.567	Propithecus_coquereli
ENSPMEG00000003076	xrn1	84	70.086	ENSPVAG00000016265	XRN1	74	85.260	Pteropus_vampyrus
ENSPMEG00000003076	xrn1	95	83.678	ENSPNYG00000010570	xrn1	88	83.478	Pundamilia_nyererei
ENSPMEG00000003076	xrn1	95	70.708	ENSPNAG00000023531	xrn1	89	70.426	Pygocentrus_nattereri
ENSPMEG00000003076	xrn1	95	63.175	ENSRNOG00000042951	Xrn1	89	63.514	Rattus_norvegicus
ENSPMEG00000003076	xrn1	95	64.744	ENSRBIG00000041227	XRN1	89	64.230	Rhinopithecus_bieti
ENSPMEG00000003076	xrn1	76	33.283	YGL173C	XRN1	73	52.446	Saccharomyces_cerevisiae
ENSPMEG00000003076	xrn1	95	64.725	ENSSBOG00000029561	XRN1	89	64.383	Saimiri_boliviensis_boliviensis
ENSPMEG00000003076	xrn1	93	64.399	ENSSHAG00000016207	XRN1	88	64.267	Sarcophilus_harrisii
ENSPMEG00000003076	xrn1	95	71.325	ENSSFOG00015024211	xrn1	90	70.997	Scleropages_formosus
ENSPMEG00000003076	xrn1	95	81.097	ENSSMAG00000016534	xrn1	90	81.650	Scophthalmus_maximus
ENSPMEG00000003076	xrn1	84	88.625	ENSSDUG00000010306	xrn1	84	88.380	Seriola_dumerili
ENSPMEG00000003076	xrn1	91	86.824	ENSSLDG00000021543	xrn1	88	86.588	Seriola_lalandi_dorsalis
ENSPMEG00000003076	xrn1	65	67.181	ENSSARG00000007741	-	75	67.181	Sorex_araneus
ENSPMEG00000003076	xrn1	95	64.929	ENSTGUG00000008498	XRN1	89	63.735	Taeniopygia_guttata
ENSPMEG00000003076	xrn1	95	76.746	ENSTRUG00000004895	xrn1	97	85.053	Takifugu_rubripes
ENSPMEG00000003076	xrn1	95	74.227	ENSTNIG00000017615	xrn1	89	73.722	Tetraodon_nigroviridis
ENSPMEG00000003076	xrn1	78	84.677	ENSTBEG00000003256	XRN1	76	83.333	Tupaia_belangeri
ENSPMEG00000003076	xrn1	92	62.599	ENSTTRG00000012914	XRN1	86	62.442	Tursiops_truncatus
ENSPMEG00000003076	xrn1	95	63.212	ENSUAMG00000001608	XRN1	99	74.326	Ursus_americanus
ENSPMEG00000003076	xrn1	95	64.637	ENSUMAG00000013625	XRN1	88	64.309	Ursus_maritimus
ENSPMEG00000003076	xrn1	95	62.225	ENSVPAG00000004690	XRN1	88	62.006	Vicugna_pacos
ENSPMEG00000003076	xrn1	79	83.784	ENSVVUG00000024461	XRN1	99	78.130	Vulpes_vulpes
ENSPMEG00000003076	xrn1	95	64.603	ENSXETG00000000619	xrn1	100	84.156	Xenopus_tropicalis
ENSPMEG00000003076	xrn1	95	89.596	ENSXCOG00000007917	xrn1	88	89.596	Xiphophorus_couchianus
ENSPMEG00000003076	xrn1	86	95.250	ENSXMAG00000018320	xrn1	84	95.004	Xiphophorus_maculatus