EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000003093 (Gene tree)
Gene ID: 106930328
Gene Symbol: tomm20a
Alias: -
Full Name: AT-rich interaction domain 4B
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 59926 bases
Position: chrKQ552209.1:82205-142130
Accession: 106930328
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000022284	Tudor-knot	PF11717.8	9.1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000013130	-	8204	XM_015007790	ENSPMEP00000022272	1262 (aa)	XP_014863276	-
ENSPMET00000013107	-	8387	XM_015007786	ENSPMEP00000022284	1323 (aa)	XP_014863272	UPI00072DE981

Gene Model

Click here to download ENSPMEG00000003093's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000003093's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000003093	tomm20a	53	41.284	ENSG00000054267	ARID4B	85	71.625	Homo_sapiens
ENSPMEG00000003093	tomm20a	100	79.318	ENSAPOG00000010823	tomm20a	100	82.440	Acanthochromis_polyacanthus
ENSPMEG00000003093	tomm20a	93	75.110	ENSACIG00000006313	tomm20a	100	86.000	Amphilophus_citrinellus
ENSPMEG00000003093	tomm20a	100	79.466	ENSAOCG00000003330	tomm20a	100	82.143	Amphiprion_ocellaris
ENSPMEG00000003093	tomm20a	100	79.392	ENSAPEG00000024018	tomm20a	100	82.068	Amphiprion_percula
ENSPMEG00000003093	tomm20a	100	77.612	ENSATEG00000014930	tomm20a	100	81.716	Anabas_testudineus
ENSPMEG00000003093	tomm20a	100	48.883	ENSAPLG00000004422	ARID4B	99	48.229	Anas_platyrhynchos
ENSPMEG00000003093	tomm20a	53	56.988	ENSACAG00000001289	ARID4B	99	50.661	Anolis_carolinensis
ENSPMEG00000003093	tomm20a	87	92.000	ENSACLG00000023521	tomm20a	98	89.423	Astatotilapia_calliptera
ENSPMEG00000003093	tomm20a	85	89.796	ENSAMXG00000003657	tomm20a	90	73.182	Astyanax_mexicanus
ENSPMEG00000003093	tomm20a	94	77.328	ENSCANG00000027498	ARID4B	99	77.328	Colobus_angolensis_palliatus
ENSPMEG00000003093	tomm20a	99	75.888	ENSCSEG00000012928	tomm20a	98	75.396	Cynoglossus_semilaevis
ENSPMEG00000003093	tomm20a	100	82.748	ENSCVAG00000003244	tomm20a	100	84.858	Cyprinodon_variegatus
ENSPMEG00000003093	tomm20a	100	60.238	ENSDARG00000090656	tomm20a	99	63.781	Danio_rerio
ENSPMEG00000003093	tomm20a	90	54.000	ENSETEG00000005596	ARID4B	93	53.778	Echinops_telfairi
ENSPMEG00000003093	tomm20a	55	55.556	ENSELUG00000018441	tomm20a	91	52.095	Esox_lucius
ENSPMEG00000003093	tomm20a	100	82.476	ENSFHEG00000003798	tomm20a	100	86.228	Fundulus_heteroclitus
ENSPMEG00000003093	tomm20a	91	72.763	ENSGMOG00000018747	tomm20a	91	73.333	Gadus_morhua
ENSPMEG00000003093	tomm20a	99	74.107	ENSGACG00000004298	tomm20a	100	75.130	Gasterosteus_aculeatus
ENSPMEG00000003093	tomm20a	77	67.910	ENSGAGG00000020544	ARID4B	97	49.522	Gopherus_agassizii
ENSPMEG00000003093	tomm20a	100	75.595	ENSHBUG00000020369	tomm20a	100	79.537	Haplochromis_burtoni
ENSPMEG00000003093	tomm20a	81	87.085	ENSHCOG00000010376	tomm20a	100	77.938	Hippocampus_comes
ENSPMEG00000003093	tomm20a	100	60.954	ENSIPUG00000014234	arid4b	99	60.150	Ictalurus_punctatus
ENSPMEG00000003093	tomm20a	84	91.463	ENSKMAG00000010987	tomm20a	98	91.935	Kryptolebias_marmoratus
ENSPMEG00000003093	tomm20a	100	59.777	ENSLOCG00000015899	tomm20a	99	59.443	Lepisosteus_oculatus
ENSPMEG00000003093	tomm20a	55	58.026	ENSLAFG00000014295	ARID4B	99	49.567	Loxodonta_africana
ENSPMEG00000003093	tomm20a	93	75.939	ENSMAMG00000017134	tomm20a	99	79.615	Mastacembelus_armatus
ENSPMEG00000003093	tomm20a	100	75.744	ENSMZEG00005009879	tomm20a	100	79.388	Maylandia_zebra
ENSPMEG00000003093	tomm20a	95	76.517	ENSMMOG00000000561	tomm20a	94	95.516	Mola_mola
ENSPMEG00000003093	tomm20a	100	77.175	ENSMALG00000005205	tomm20a	100	80.597	Monopterus_albus
ENSPMEG00000003093	tomm20a	93	84.855	ENSNBRG00000019684	tomm20a	100	86.192	Neolamprologus_brichardi
ENSPMEG00000003093	tomm20a	100	72.511	ENSORLG00000012510	tomm20a	100	75.913	Oryzias_latipes
ENSPMEG00000003093	tomm20a	91	82.844	ENSORLG00020013988	tomm20a	100	83.333	Oryzias_latipes_hni
ENSPMEG00000003093	tomm20a	91	82.540	ENSORLG00015022835	tomm20a	100	83.036	Oryzias_latipes_hsok
ENSPMEG00000003093	tomm20a	100	72.802	ENSOMEG00000000521	tomm20a	100	77.113	Oryzias_melastigma
ENSPMEG00000003093	tomm20a	73	47.318	ENSOARG00000003481	ARID4B	97	50.543	Ovis_aries
ENSPMEG00000003093	tomm20a	56	57.682	ENSPMGG00000001596	tomm20a	89	79.845	Periophthalmus_magnuspinnatus
ENSPMEG00000003093	tomm20a	100	49.284	ENSPCIG00000029756	ARID4B	99	50.515	Phascolarctos_cinereus
ENSPMEG00000003093	tomm20a	100	97.430	ENSPFOG00000019430	tomm20a	100	97.430	Poecilia_formosa
ENSPMEG00000003093	tomm20a	100	96.901	ENSPLAG00000010554	tomm20a	100	96.901	Poecilia_latipinna
ENSPMEG00000003093	tomm20a	100	97.205	ENSPREG00000007996	tomm20a	100	97.205	Poecilia_reticulata
ENSPMEG00000003093	tomm20a	99	74.682	ENSPNYG00000013988	tomm20a	100	75.131	Pundamilia_nyererei
ENSPMEG00000003093	tomm20a	100	64.238	ENSPNAG00000000523	tomm20a	92	64.206	Pygocentrus_nattereri
ENSPMEG00000003093	tomm20a	75	45.987	ENSRNOG00000016391	LOC100912163	96	45.159	Rattus_norvegicus
ENSPMEG00000003093	tomm20a	94	70.455	ENSRBIG00000042029	ARID4B	96	47.311	Rhinopithecus_bieti
ENSPMEG00000003093	tomm20a	51	43.958	ENSSHAG00000015214	ARID4B	99	49.530	Sarcophilus_harrisii
ENSPMEG00000003093	tomm20a	74	48.713	ENSSFOG00015008923	tomm20a	98	49.287	Scleropages_formosus
ENSPMEG00000003093	tomm20a	100	57.991	ENSSFOG00015000132	arid4b	99	59.417	Scleropages_formosus
ENSPMEG00000003093	tomm20a	100	79.346	ENSSDUG00000003019	tomm20a	100	82.699	Seriola_dumerili
ENSPMEG00000003093	tomm20a	100	79.006	ENSSPAG00000007358	tomm20a	100	81.832	Stegastes_partitus
ENSPMEG00000003093	tomm20a	100	50.571	ENSTGUG00000010246	ARID4B	99	50.036	Taeniopygia_guttata
ENSPMEG00000003093	tomm20a	67	68.954	ENSTRUG00000002893	tomm20a	100	68.627	Takifugu_rubripes
ENSPMEG00000003093	tomm20a	70	65.668	ENSTBEG00000003961	ARID4B	67	65.207	Tupaia_belangeri
ENSPMEG00000003093	tomm20a	100	46.895	ENSTTRG00000002228	ARID4B	99	50.181	Tursiops_truncatus
ENSPMEG00000003093	tomm20a	69	54.245	ENSVPAG00000006841	ARID4B	68	57.568	Vicugna_pacos
ENSPMEG00000003093	tomm20a	100	96.375	ENSXMAG00000006538	tomm20a	100	96.375	Xiphophorus_maculatus