EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000004988 (Gene tree)
Gene ID: -
Gene Symbol: zgc:171482
Alias: -
Full Name: zinc finger matrin-type protein 4-like
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 61504 bases
Position: chrKQ551186.1:532062-593565
Accession: 106916439
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000023391	zf-met	PF12874.7	1.4e-27	1	4
ENSPMEP00000023391	zf-met	PF12874.7	1.4e-27	2	4
ENSPMEP00000023391	zf-met	PF12874.7	1.4e-27	3	4
ENSPMEP00000023391	zf-met	PF12874.7	1.4e-27	4	4
ENSPMEP00000003816	zf-met	PF12874.7	1e-19	1	3
ENSPMEP00000003816	zf-met	PF12874.7	1e-19	2	3
ENSPMEP00000003816	zf-met	PF12874.7	1e-19	3	3
ENSPMEP00000023391	zf-C2H2_jaz	PF12171.8	8.1e-21	1	2
ENSPMEP00000023391	zf-C2H2_jaz	PF12171.8	8.1e-21	2	2
ENSPMEP00000003816	zf-C2H2_jaz	PF12171.8	1.7e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000010251	-	1628	XM_014984734	ENSPMEP00000003816	166 (aa)	XP_014840220	-
ENSPMET00000010277	-	645	-	ENSPMEP00000023391	214 (aa)	-	-

Gene Model

Click here to download ENSPMEG00000004988's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000004988's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000004988	zgc:171482	99	63.229	ENSPMEG00000007870	zmat4a	95	73.394
ENSPMEG00000004988	zgc:171482	96	44.240	ENSPMEG00000012817	znf346	66	51.327

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000004988	zgc:171482	100	88.991	ENSAPOG00000019970	zgc:171482	100	88.991	Acanthochromis_polyacanthus
ENSPMEG00000004988	zgc:171482	72	97.500	ENSACIG00000021512	zgc:171482	90	97.500	Amphilophus_citrinellus
ENSPMEG00000004988	zgc:171482	75	97.581	ENSAOCG00000000751	zgc:171482	91	97.581	Amphiprion_ocellaris
ENSPMEG00000004988	zgc:171482	78	96.124	ENSAPEG00000014154	zgc:171482	93	96.124	Amphiprion_percula
ENSPMEG00000004988	zgc:171482	100	83.111	ENSATEG00000001371	zgc:171482	99	95.833	Anabas_testudineus
ENSPMEG00000004988	zgc:171482	89	85.034	ENSACLG00000010511	zgc:171482	88	95.276	Astatotilapia_calliptera
ENSPMEG00000004988	zgc:171482	100	84.862	ENSAMXG00000002299	zgc:171482	99	87.903	Astyanax_mexicanus
ENSPMEG00000004988	zgc:171482	95	91.083	ENSCSEG00000006509	zgc:171482	99	91.083	Cynoglossus_semilaevis
ENSPMEG00000004988	zgc:171482	100	86.842	ENSCVAG00000013606	zgc:171482	99	98.333	Cyprinodon_variegatus
ENSPMEG00000004988	zgc:171482	99	79.913	ENSDARG00000074415	zgc:171482	100	89.256	Danio_rerio
ENSPMEG00000004988	zgc:171482	77	90.551	ENSELUG00000021817	zgc:171482	91	90.551	Esox_lucius
ENSPMEG00000004988	zgc:171482	55	60.638	ENSELUG00000021794	-	69	80.374	Esox_lucius
ENSPMEG00000004988	zgc:171482	95	59.006	ENSELUG00000017517	-	60	84.444	Esox_lucius
ENSPMEG00000004988	zgc:171482	100	82.456	ENSFHEG00000002233	zgc:171482	99	95.041	Fundulus_heteroclitus
ENSPMEG00000004988	zgc:171482	100	85.586	ENSGMOG00000010508	zgc:171482	99	95.200	Gadus_morhua
ENSPMEG00000004988	zgc:171482	95	95.541	ENSGAFG00000009398	zgc:171482	99	95.541	Gambusia_affinis
ENSPMEG00000004988	zgc:171482	100	84.979	ENSGACG00000007680	zgc:171482	99	96.000	Gasterosteus_aculeatus
ENSPMEG00000004988	zgc:171482	78	95.349	ENSHBUG00000023289	zgc:171482	97	95.349	Haplochromis_burtoni
ENSPMEG00000004988	zgc:171482	78	87.879	ENSHCOG00000018086	zgc:171482	94	91.270	Hippocampus_comes
ENSPMEG00000004988	zgc:171482	55	57.895	ENSIPUG00000000356	-	68	85.149	Ictalurus_punctatus
ENSPMEG00000004988	zgc:171482	79	86.325	ENSIPUG00000000361	zgc:171482	85	94.017	Ictalurus_punctatus
ENSPMEG00000004988	zgc:171482	100	86.301	ENSKMAG00000005077	zgc:171482	87	96.800	Kryptolebias_marmoratus
ENSPMEG00000004988	zgc:171482	76	96.825	ENSLBEG00000023823	zgc:171482	90	96.825	Labrus_bergylta
ENSPMEG00000004988	zgc:171482	100	78.947	ENSLOCG00000008863	zgc:171482	97	88.800	Lepisosteus_oculatus
ENSPMEG00000004988	zgc:171482	99	87.302	ENSMAMG00000001031	zgc:171482	81	96.124	Mastacembelus_armatus
ENSPMEG00000004988	zgc:171482	100	86.667	ENSMZEG00005027721	zgc:171482	99	90.833	Maylandia_zebra
ENSPMEG00000004988	zgc:171482	77	96.850	ENSMMOG00000010523	zgc:171482	97	96.850	Mola_mola
ENSPMEG00000004988	zgc:171482	100	84.348	ENSMALG00000017883	zgc:171482	99	95.122	Monopterus_albus
ENSPMEG00000004988	zgc:171482	73	95.041	ENSNBRG00000021035	zgc:171482	90	95.041	Neolamprologus_brichardi
ENSPMEG00000004988	zgc:171482	99	87.225	ENSONIG00000018365	zgc:171482	99	95.238	Oreochromis_niloticus
ENSPMEG00000004988	zgc:171482	100	85.526	ENSORLG00000007607	zgc:171482	99	100.000	Oryzias_latipes
ENSPMEG00000004988	zgc:171482	100	86.283	ENSORLG00020003563	zgc:171482	99	93.220	Oryzias_latipes_hni
ENSPMEG00000004988	zgc:171482	100	85.526	ENSORLG00015008552	zgc:171482	99	100.000	Oryzias_latipes_hsok
ENSPMEG00000004988	zgc:171482	78	96.899	ENSOMEG00000003526	zgc:171482	91	96.899	Oryzias_melastigma
ENSPMEG00000004988	zgc:171482	86	83.898	ENSPKIG00000015911	-	81	95.690	Paramormyrops_kingsleyae
ENSPMEG00000004988	zgc:171482	79	87.156	ENSPKIG00000016244	zgc:171482	82	88.696	Paramormyrops_kingsleyae
ENSPMEG00000004988	zgc:171482	99	79.835	ENSPMGG00000020230	zgc:171482	100	79.835	Periophthalmus_magnuspinnatus
ENSPMEG00000004988	zgc:171482	99	85.417	ENSPFOG00000001974	zgc:171482	96	85.417	Poecilia_formosa
ENSPMEG00000004988	zgc:171482	100	94.495	ENSPLAG00000003327	zgc:171482	99	99.213	Poecilia_latipinna
ENSPMEG00000004988	zgc:171482	76	100.000	ENSPREG00000019241	zgc:171482	91	100.000	Poecilia_reticulata
ENSPMEG00000004988	zgc:171482	89	85.034	ENSPNYG00000007773	zgc:171482	88	95.276	Pundamilia_nyererei
ENSPMEG00000004988	zgc:171482	99	78.788	ENSPNAG00000007619	zgc:171482	100	89.600	Pygocentrus_nattereri
ENSPMEG00000004988	zgc:171482	77	83.465	ENSSFOG00015016149	zgc:171482	97	83.465	Scleropages_formosus
ENSPMEG00000004988	zgc:171482	87	86.325	ENSSFOG00015021238	zgc:171482	78	90.517	Scleropages_formosus
ENSPMEG00000004988	zgc:171482	78	96.124	ENSSMAG00000002715	zgc:171482	83	96.124	Scophthalmus_maximus
ENSPMEG00000004988	zgc:171482	77	97.638	ENSSDUG00000008773	zgc:171482	89	97.638	Seriola_dumerili
ENSPMEG00000004988	zgc:171482	77	97.638	ENSSLDG00000019510	zgc:171482	89	97.638	Seriola_lalandi_dorsalis
ENSPMEG00000004988	zgc:171482	75	97.581	ENSSPAG00000013724	zgc:171482	98	97.581	Stegastes_partitus
ENSPMEG00000004988	zgc:171482	77	92.126	ENSTRUG00000005705	zgc:171482	75	92.126	Takifugu_rubripes
ENSPMEG00000004988	zgc:171482	100	75.877	ENSTNIG00000008679	zgc:171482	100	75.877	Tetraodon_nigroviridis
ENSPMEG00000004988	zgc:171482	83	61.654	ENSXETG00000013525	zmat4	76	78.571	Xenopus_tropicalis
ENSPMEG00000004988	zgc:171482	100	98.291	ENSXMAG00000002641	zgc:171482	99	87.342	Xiphophorus_maculatus