EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000005726 (Gene tree)
Gene ID: 106918386
Gene Symbol: sf1
Alias: -
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 13423 bases
Position: chrKQ551284.1:227457-240879
Accession: 106918386
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000004471	KH_1	PF00013.29	3.4e-06	1	1
ENSPMEP00000004474	KH_1	PF00013.29	3.6e-06	1	1
ENSPMEP00000004471	zf-CCHC	PF00098.23	0.0005	1	1
ENSPMEP00000004474	zf-CCHC	PF00098.23	0.00053	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000009133	-	2975	-	ENSPMEP00000004471	643 (aa)	-	-
ENSPMET00000009121	-	3398	XM_014988089	ENSPMEP00000004474	676 (aa)	XP_014843575	UPI00072EE800

Gene Model

Click here to download ENSPMEG00000005726's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000005726's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000005726	sf1	97	90.152	ENSAPOG00000012341	sf1	97	89.242	Acanthochromis_polyacanthus
ENSPMEG00000005726	sf1	62	79.426	ENSAMEG00000017828	SF1	57	83.862	Ailuropoda_melanoleuca
ENSPMEG00000005726	sf1	97	90.288	ENSAOCG00000010934	sf1	97	90.288	Amphiprion_ocellaris
ENSPMEG00000005726	sf1	97	90.288	ENSAPEG00000009498	sf1	97	90.288	Amphiprion_percula
ENSPMEG00000005726	sf1	67	89.254	ENSATEG00000001894	sf1	97	89.848	Anabas_testudineus
ENSPMEG00000005726	sf1	62	79.426	ENSANAG00000026664	-	88	83.862	Aotus_nancymaae
ENSPMEG00000005726	sf1	88	65.954	ENSANAG00000022607	-	88	74.799	Aotus_nancymaae
ENSPMEG00000005726	sf1	68	83.843	ENSAMXG00000003630	sf1	86	84.323	Astyanax_mexicanus
ENSPMEG00000005726	sf1	62	79.426	ENSBTAG00000001035	SF1	61	83.862	Bos_taurus
ENSPMEG00000005726	sf1	62	79.426	ENSCJAG00000002780	SF1	75	69.320	Callithrix_jacchus
ENSPMEG00000005726	sf1	62	79.426	ENSCAFG00000014239	SF1	58	83.862	Canis_familiaris
ENSPMEG00000005726	sf1	62	79.426	ENSCAFG00020014381	SF1	58	83.862	Canis_lupus_dingo
ENSPMEG00000005726	sf1	62	79.426	ENSCHIG00000025867	SF1	67	83.862	Capra_hircus
ENSPMEG00000005726	sf1	62	78.125	ENSCAPG00000010762	SF1	66	83.820	Cavia_aperea
ENSPMEG00000005726	sf1	62	78.177	ENSCPOG00000012290	SF1	69	83.820	Cavia_porcellus
ENSPMEG00000005726	sf1	62	71.463	ENSCCAG00000023781	-	82	73.810	Cebus_capucinus
ENSPMEG00000005726	sf1	62	79.426	ENSCCAG00000037881	SF1	88	83.862	Cebus_capucinus
ENSPMEG00000005726	sf1	62	79.426	ENSCATG00000011564	SF1	88	83.862	Cercocebus_atys
ENSPMEG00000005726	sf1	62	79.426	ENSCSAG00000007258	SF1	67	83.862	Chlorocebus_sabaeus
ENSPMEG00000005726	sf1	59	74.185	ENSCHOG00000006008	SF1	66	78.273	Choloepus_hoffmanni
ENSPMEG00000005726	sf1	60	56.057	ENSCING00000005564	-	83	55.765	Ciona_intestinalis
ENSPMEG00000005726	sf1	86	49.460	ENSCSAVG00000009055	-	72	62.215	Ciona_savignyi
ENSPMEG00000005726	sf1	62	79.426	ENSCANG00000042201	SF1	88	83.862	Colobus_angolensis_palliatus
ENSPMEG00000005726	sf1	62	79.665	ENSCGRG00001003677	Sf1	65	84.392	Cricetulus_griseus_chok1gshd
ENSPMEG00000005726	sf1	62	79.616	ENSCGRG00000001708	Sf1	68	84.350	Cricetulus_griseus_crigri
ENSPMEG00000005726	sf1	97	87.595	ENSCSEG00000014375	sf1	94	87.860	Cynoglossus_semilaevis
ENSPMEG00000005726	sf1	98	94.856	ENSCVAG00000001670	sf1	97	93.921	Cyprinodon_variegatus
ENSPMEG00000005726	sf1	88	84.507	ENSDARG00000008188	sf1	97	84.580	Danio_rerio
ENSPMEG00000005726	sf1	62	79.665	ENSDNOG00000001282	SF1	67	83.862	Dasypus_novemcinctus
ENSPMEG00000005726	sf1	62	79.426	ENSDORG00000016334	Sf1	58	83.862	Dipodomys_ordii
ENSPMEG00000005726	sf1	62	72.356	ENSETEG00000012830	SF1	51	75.871	Echinops_telfairi
ENSPMEG00000005726	sf1	62	79.426	ENSEASG00005018272	SF1	67	83.862	Equus_asinus_asinus
ENSPMEG00000005726	sf1	62	79.665	ENSECAG00000024544	SF1	67	84.127	Equus_caballus
ENSPMEG00000005726	sf1	55	79.412	ENSEEUG00000001058	SF1	83	84.132	Erinaceus_europaeus
ENSPMEG00000005726	sf1	78	77.551	ENSELUG00000013225	sf1	60	83.226	Esox_lucius
ENSPMEG00000005726	sf1	62	79.426	ENSFCAG00000012231	SF1	75	69.804	Felis_catus
ENSPMEG00000005726	sf1	62	79.376	ENSFDAG00000009833	SF1	66	83.820	Fukomys_damarensis
ENSPMEG00000005726	sf1	97	89.970	ENSFHEG00000022656	sf1	97	89.514	Fundulus_heteroclitus
ENSPMEG00000005726	sf1	74	77.292	ENSGMOG00000007469	sf1	59	93.865	Gadus_morhua
ENSPMEG00000005726	sf1	91	98.862	ENSGAFG00000019284	sf1	100	98.862	Gambusia_affinis
ENSPMEG00000005726	sf1	65	81.352	ENSGAGG00000021691	SF1	68	72.521	Gopherus_agassizii
ENSPMEG00000005726	sf1	67	90.769	ENSHBUG00000011598	sf1	97	89.879	Haplochromis_burtoni
ENSPMEG00000005726	sf1	62	79.426	ENSHGLG00000009541	SF1	65	83.862	Heterocephalus_glaber_female
ENSPMEG00000005726	sf1	62	79.376	ENSHGLG00100013879	-	66	83.820	Heterocephalus_glaber_male
ENSPMEG00000005726	sf1	62	68.966	ENSHGLG00100008255	-	72	75.066	Heterocephalus_glaber_male
ENSPMEG00000005726	sf1	69	85.957	ENSHCOG00000011388	sf1	97	86.191	Hippocampus_comes
ENSPMEG00000005726	sf1	62	79.376	ENSSTOG00000009790	-	59	83.820	Ictidomys_tridecemlineatus
ENSPMEG00000005726	sf1	66	70.159	ENSSTOG00000024353	-	67	73.368	Ictidomys_tridecemlineatus
ENSPMEG00000005726	sf1	62	79.665	ENSJJAG00000011788	Sf1	58	84.127	Jaculus_jaculus
ENSPMEG00000005726	sf1	68	91.939	ENSKMAG00000005854	sf1	87	91.754	Kryptolebias_marmoratus
ENSPMEG00000005726	sf1	83	88.602	ENSLBEG00000019836	sf1	72	88.913	Labrus_bergylta
ENSPMEG00000005726	sf1	68	80.679	ENSLOCG00000002130	sf1	72	81.277	Lepisosteus_oculatus
ENSPMEG00000005726	sf1	62	80.529	ENSLAFG00000007201	SF1	63	84.574	Loxodonta_africana
ENSPMEG00000005726	sf1	62	79.426	ENSMFAG00000033122	SF1	88	83.862	Macaca_fascicularis
ENSPMEG00000005726	sf1	62	79.426	ENSMMUG00000022606	SF1	90	83.862	Macaca_mulatta
ENSPMEG00000005726	sf1	62	79.426	ENSMNEG00000037901	SF1	88	83.862	Macaca_nemestrina
ENSPMEG00000005726	sf1	62	79.426	ENSMLEG00000040706	SF1	91	82.338	Mandrillus_leucophaeus
ENSPMEG00000005726	sf1	67	91.009	ENSMAMG00000001780	sf1	97	90.606	Mastacembelus_armatus
ENSPMEG00000005726	sf1	67	90.769	ENSMZEG00005009196	sf1	97	89.879	Maylandia_zebra
ENSPMEG00000005726	sf1	62	79.665	ENSMAUG00000014064	Sf1	65	84.392	Mesocricetus_auratus
ENSPMEG00000005726	sf1	62	79.426	ENSMICG00000001202	SF1	88	83.641	Microcebus_murinus
ENSPMEG00000005726	sf1	62	79.426	ENSMOCG00000022038	Sf1	65	84.127	Microtus_ochrogaster
ENSPMEG00000005726	sf1	67	86.842	ENSMMOG00000020474	sf1	66	87.061	Mola_mola
ENSPMEG00000005726	sf1	62	79.475	ENSMODG00000029407	SF1	80	84.127	Monodelphis_domestica
ENSPMEG00000005726	sf1	67	84.649	ENSMALG00000020521	sf1	72	84.649	Monopterus_albus
ENSPMEG00000005726	sf1	62	79.665	MGP_CAROLIEiJ_G0022607	Sf1	99	95.489	Mus_caroli
ENSPMEG00000005726	sf1	62	79.665	ENSMUSG00000024949	Sf1	99	95.489	Mus_musculus
ENSPMEG00000005726	sf1	62	79.665	MGP_PahariEiJ_G0014101	Sf1	99	95.489	Mus_pahari
ENSPMEG00000005726	sf1	62	79.665	MGP_SPRETEiJ_G0023518	Sf1	99	95.489	Mus_spretus
ENSPMEG00000005726	sf1	62	79.665	ENSMPUG00000012684	SF1	58	83.862	Mustela_putorius_furo
ENSPMEG00000005726	sf1	62	79.426	ENSMLUG00000015217	-	59	82.124	Myotis_lucifugus
ENSPMEG00000005726	sf1	67	74.945	ENSMLUG00000029800	-	63	80.159	Myotis_lucifugus
ENSPMEG00000005726	sf1	62	79.665	ENSNGAG00000005550	Sf1	65	84.127	Nannospalax_galili
ENSPMEG00000005726	sf1	62	79.426	ENSNLEG00000005236	-	88	83.862	Nomascus_leucogenys
ENSPMEG00000005726	sf1	61	79.562	ENSMEUG00000013424	SF1	68	84.367	Notamacropus_eugenii
ENSPMEG00000005726	sf1	55	79.679	ENSOPRG00000005008	SF1	66	84.431	Ochotona_princeps
ENSPMEG00000005726	sf1	67	90.549	ENSONIG00000015728	sf1	97	89.728	Oreochromis_niloticus
ENSPMEG00000005726	sf1	52	74.785	ENSOANG00000002909	SF1	76	75.549	Ornithorhynchus_anatinus
ENSPMEG00000005726	sf1	62	79.426	ENSOCUG00000026486	SF1	59	83.862	Oryctolagus_cuniculus
ENSPMEG00000005726	sf1	69	88.060	ENSORLG00000011853	sf1	66	89.648	Oryzias_latipes
ENSPMEG00000005726	sf1	69	88.060	ENSORLG00020011834	sf1	66	89.648	Oryzias_latipes_hni
ENSPMEG00000005726	sf1	68	88.403	ENSORLG00015012855	sf1	66	88.767	Oryzias_latipes_hsok
ENSPMEG00000005726	sf1	68	90.153	ENSOMEG00000005210	sf1	97	89.514	Oryzias_melastigma
ENSPMEG00000005726	sf1	62	79.426	ENSOGAG00000016196	SF1	58	83.862	Otolemur_garnettii
ENSPMEG00000005726	sf1	62	79.426	ENSOARG00000009166	SF1	65	83.862	Ovis_aries
ENSPMEG00000005726	sf1	62	80.048	ENSPPAG00000002799	-	90	83.862	Pan_paniscus
ENSPMEG00000005726	sf1	62	79.426	ENSPPRG00000013566	SF1	57	85.042	Panthera_pardus
ENSPMEG00000005726	sf1	62	79.426	ENSPTIG00000016141	SF1	67	83.029	Panthera_tigris_altaica
ENSPMEG00000005726	sf1	63	79.577	ENSPTRG00000003846	SF1	88	83.862	Pan_troglodytes
ENSPMEG00000005726	sf1	62	79.426	ENSPANG00000020754	SF1	88	83.862	Papio_anubis
ENSPMEG00000005726	sf1	51	80.119	ENSPKIG00000012116	sf1	79	80.126	Paramormyrops_kingsleyae
ENSPMEG00000005726	sf1	62	79.665	ENSPEMG00000010463	Sf1	65	84.392	Peromyscus_maniculatus_bairdii
ENSPMEG00000005726	sf1	62	79.665	ENSPCIG00000018173	SF1	60	84.127	Phascolarctos_cinereus
ENSPMEG00000005726	sf1	100	99.852	ENSPFOG00000013683	sf1	100	99.852	Poecilia_formosa
ENSPMEG00000005726	sf1	100	97.104	ENSPLAG00000018076	sf1	100	97.104	Poecilia_latipinna
ENSPMEG00000005726	sf1	100	98.521	ENSPREG00000004155	sf1	100	98.521	Poecilia_reticulata
ENSPMEG00000005726	sf1	62	79.426	ENSPPYG00000003098	-	70	83.862	Pongo_abelii
ENSPMEG00000005726	sf1	62	79.187	ENSPCAG00000013631	SF1	75	68.872	Procavia_capensis
ENSPMEG00000005726	sf1	62	79.426	ENSPCOG00000027546	SF1	88	83.641	Propithecus_coquereli
ENSPMEG00000005726	sf1	62	79.665	ENSPVAG00000016938	SF1	75	71.146	Pteropus_vampyrus
ENSPMEG00000005726	sf1	67	90.549	ENSPNYG00000004673	sf1	97	89.728	Pundamilia_nyererei
ENSPMEG00000005726	sf1	68	82.251	ENSPNAG00000013072	sf1	97	83.384	Pygocentrus_nattereri
ENSPMEG00000005726	sf1	62	79.665	ENSRNOG00000021085	Sf1	60	84.194	Rattus_norvegicus
ENSPMEG00000005726	sf1	62	79.426	ENSRBIG00000042818	SF1	88	83.862	Rhinopithecus_bieti
ENSPMEG00000005726	sf1	62	79.426	ENSRROG00000045655	SF1	91	82.338	Rhinopithecus_roxellana
ENSPMEG00000005726	sf1	63	36.977	YLR116W	MSL5	56	44.203	Saccharomyces_cerevisiae
ENSPMEG00000005726	sf1	89	63.339	ENSSBOG00000022267	-	87	70.185	Saimiri_boliviensis_boliviensis
ENSPMEG00000005726	sf1	74	72.279	ENSSHAG00000006841	SF1	68	85.484	Sarcophilus_harrisii
ENSPMEG00000005726	sf1	71	80.538	ENSSFOG00015021978	sf1	66	82.018	Scleropages_formosus
ENSPMEG00000005726	sf1	84	85.763	ENSSMAG00000007549	sf1	70	89.130	Scophthalmus_maximus
ENSPMEG00000005726	sf1	67	90.372	ENSSDUG00000003903	sf1	98	90.312	Seriola_dumerili
ENSPMEG00000005726	sf1	62	75.060	ENSSARG00000008180	SF1	71	79.045	Sorex_araneus
ENSPMEG00000005726	sf1	62	79.254	ENSSPUG00000012907	SF1	58	87.324	Sphenodon_punctatus
ENSPMEG00000005726	sf1	97	90.288	ENSSPAG00000019060	sf1	97	90.288	Stegastes_partitus
ENSPMEG00000005726	sf1	62	79.426	ENSSSCG00000013021	SF1	67	83.862	Sus_scrofa
ENSPMEG00000005726	sf1	76	71.780	ENSTNIG00000004820	sf1	72	77.062	Tetraodon_nigroviridis
ENSPMEG00000005726	sf1	62	73.710	ENSTBEG00000013133	SF1	55	75.457	Tupaia_belangeri
ENSPMEG00000005726	sf1	62	74.820	ENSTTRG00000008857	SF1	68	79.045	Tursiops_truncatus
ENSPMEG00000005726	sf1	62	81.265	ENSUMAG00000007268	SF1	69	83.641	Ursus_maritimus
ENSPMEG00000005726	sf1	62	79.426	ENSVVUG00000028585	SF1	67	83.862	Vulpes_vulpes
ENSPMEG00000005726	sf1	89	72.945	ENSXETG00000008434	sf1	62	85.635	Xenopus_tropicalis
ENSPMEG00000005726	sf1	75	92.555	ENSXCOG00000003704	sf1	94	92.555	Xiphophorus_couchianus
ENSPMEG00000005726	sf1	100	99.112	ENSXMAG00000007822	sf1	100	99.112	Xiphophorus_maculatus