EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000005744 (Gene tree)
Gene ID: 106918383
Gene Symbol: cth1
Alias: -
Full Name: zinc finger protein 36%2C C3H1 type-like 2
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 2497 bases
Position: chrKQ551284.1:214787-217283
Accession: 106918383
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000023868	zf-CCCH	PF00642.24	3.6e-29	1	3
ENSPMEP00000023868	zf-CCCH	PF00642.24	3.6e-29	2	3
ENSPMEP00000023868	zf-CCCH	PF00642.24	3.6e-29	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000009088	-	1818	XM_014988086	ENSPMEP00000023868	303 (aa)	XP_014843572	UPI00072E91D8

Gene Model

Click here to download ENSPMEG00000005744's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000005744's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000005744	cth1	83	51.515	ENSPMEG00000013175	-	50	33.333
ENSPMEG00000005744	cth1	83	51.515	ENSPMEG00000008897	zfp36l2	50	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000005744	cth1	89	64.260	ENSAPOG00000012552	cth1	99	66.667	Acanthochromis_polyacanthus
ENSPMEG00000005744	cth1	88	58.929	ENSACIG00000016026	cth1	99	56.740	Amphilophus_citrinellus
ENSPMEG00000005744	cth1	100	63.376	ENSAOCG00000001644	cth1	100	66.139	Amphiprion_ocellaris
ENSPMEG00000005744	cth1	100	63.376	ENSAPEG00000008930	cth1	100	66.139	Amphiprion_percula
ENSPMEG00000005744	cth1	99	65.031	ENSATEG00000002281	cth1	97	64.706	Anabas_testudineus
ENSPMEG00000005744	cth1	89	57.092	ENSACLG00000015353	cth1	100	56.333	Astatotilapia_calliptera
ENSPMEG00000005744	cth1	96	52.351	ENSAMXG00000025717	cth1	98	54.487	Astyanax_mexicanus
ENSPMEG00000005744	cth1	100	59.006	ENSCSEG00000014617	cth1	100	59.692	Cynoglossus_semilaevis
ENSPMEG00000005744	cth1	100	66.667	ENSCVAG00000001680	cth1	65	66.667	Cyprinodon_variegatus
ENSPMEG00000005744	cth1	90	51.027	ENSDARG00000057328	cth1	99	54.688	Danio_rerio
ENSPMEG00000005744	cth1	99	48.961	ENSELUG00000012738	cth1	99	48.512	Esox_lucius
ENSPMEG00000005744	cth1	100	70.701	ENSFHEG00000022665	cth1	100	71.338	Fundulus_heteroclitus
ENSPMEG00000005744	cth1	99	57.547	ENSGMOG00000007360	cth1	100	56.604	Gadus_morhua
ENSPMEG00000005744	cth1	100	85.759	ENSGAFG00000019288	cth1	100	85.759	Gambusia_affinis
ENSPMEG00000005744	cth1	99	59.494	ENSGACG00000000802	cth1	99	59.494	Gasterosteus_aculeatus
ENSPMEG00000005744	cth1	100	57.460	ENSHBUG00000014400	cth1	100	55.660	Haplochromis_burtoni
ENSPMEG00000005744	cth1	98	50.671	ENSHCOG00000010276	cth1	98	50.671	Hippocampus_comes
ENSPMEG00000005744	cth1	96	53.871	ENSIPUG00000018040	cth1	95	54.839	Ictalurus_punctatus
ENSPMEG00000005744	cth1	100	62.701	ENSKMAG00000005944	cth1	100	62.701	Kryptolebias_marmoratus
ENSPMEG00000005744	cth1	100	62.733	ENSLBEG00000019253	cth1	100	64.241	Labrus_bergylta
ENSPMEG00000005744	cth1	66	50.242	ENSLOCG00000002047	cth1	97	50.242	Lepisosteus_oculatus
ENSPMEG00000005744	cth1	99	47.453	ENSMAMG00000001525	cth1	99	47.861	Mastacembelus_armatus
ENSPMEG00000005744	cth1	100	58.095	ENSMZEG00005022335	cth1	100	56.289	Maylandia_zebra
ENSPMEG00000005744	cth1	94	62.829	ENSMMOG00000020518	cth1	100	63.816	Mola_mola
ENSPMEG00000005744	cth1	100	50.402	ENSMALG00000020738	cth1	58	58.824	Monopterus_albus
ENSPMEG00000005744	cth1	88	59.701	ENSNBRG00000022789	cth1	88	58.303	Neolamprologus_brichardi
ENSPMEG00000005744	cth1	99	57.862	ENSONIG00000021318	cth1	99	56.211	Oreochromis_niloticus
ENSPMEG00000005744	cth1	100	55.911	ENSORLG00000022847	cth1	100	58.917	Oryzias_latipes
ENSPMEG00000005744	cth1	100	55.911	ENSORLG00020011979	cth1	100	57.632	Oryzias_latipes_hni
ENSPMEG00000005744	cth1	100	56.230	ENSORLG00015013084	cth1	100	58.786	Oryzias_latipes_hsok
ENSPMEG00000005744	cth1	100	55.663	ENSOMEG00000005809	cth1	83	58.784	Oryzias_melastigma
ENSPMEG00000005744	cth1	97	50.000	ENSPKIG00000015883	cth1	95	49.682	Paramormyrops_kingsleyae
ENSPMEG00000005744	cth1	99	58.434	ENSPMGG00000004275	cth1	100	58.133	Periophthalmus_magnuspinnatus
ENSPMEG00000005744	cth1	100	99.340	ENSPFOG00000013583	cth1	94	99.340	Poecilia_formosa
ENSPMEG00000005744	cth1	100	98.350	ENSPLAG00000018158	cth1	94	98.350	Poecilia_latipinna
ENSPMEG00000005744	cth1	99	93.377	ENSPREG00000004099	cth1	100	93.377	Poecilia_reticulata
ENSPMEG00000005744	cth1	87	59.108	ENSPNYG00000016705	cth1	91	57.721	Pundamilia_nyererei
ENSPMEG00000005744	cth1	96	54.313	ENSPNAG00000013147	cth1	98	54.062	Pygocentrus_nattereri
ENSPMEG00000005744	cth1	86	56.727	ENSSFOG00015017190	cth1	87	54.874	Scleropages_formosus
ENSPMEG00000005744	cth1	100	62.928	ENSSMAG00000007977	cth1	100	66.355	Scophthalmus_maximus
ENSPMEG00000005744	cth1	100	64.634	ENSSDUG00000004321	cth1	100	65.244	Seriola_dumerili
ENSPMEG00000005744	cth1	99	64.024	ENSSLDG00000010023	-	100	64.634	Seriola_lalandi_dorsalis
ENSPMEG00000005744	cth1	100	64.438	ENSSLDG00000012760	cth1	100	65.046	Seriola_lalandi_dorsalis
ENSPMEG00000005744	cth1	100	63.830	ENSSLDG00000004516	-	100	64.438	Seriola_lalandi_dorsalis
ENSPMEG00000005744	cth1	100	61.709	ENSSPAG00000018659	cth1	100	65.823	Stegastes_partitus
ENSPMEG00000005744	cth1	100	59.190	ENSTRUG00000012770	cth1	100	59.190	Takifugu_rubripes
ENSPMEG00000005744	cth1	100	57.680	ENSTNIG00000000740	cth1	100	57.680	Tetraodon_nigroviridis
ENSPMEG00000005744	cth1	82	76.210	ENSXCOG00000003710	cth1	88	75.904	Xiphophorus_couchianus
ENSPMEG00000005744	cth1	100	86.943	ENSXMAG00000023885	cth1	100	86.943	Xiphophorus_maculatus