EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000006000 (Gene tree)
Gene ID: 106931648
Gene Symbol: ncl
Alias: -
Full Name: nucleolin
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 7504 bases
Position: chrKQ552380.1:98112-105615
Accession: 106931648
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000024028	RRM_1	PF00076.22	1.1e-61	1	4
ENSPMEP00000024028	RRM_1	PF00076.22	1.1e-61	2	4
ENSPMEP00000024028	RRM_1	PF00076.22	1.1e-61	3	4
ENSPMEP00000024028	RRM_1	PF00076.22	1.1e-61	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000008690	-	3448	XM_015009879	ENSPMEP00000024028	736 (aa)	XP_014865365	UPI00072E6D4E

Gene Model

Click here to download ENSPMEG00000006000's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000006000's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000006000	ncl	53	41.162	ENSPMEG00000004046	-	78	41.344

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000006000	ncl	57	81.905	ENSAPOG00000023888	ncl	65	80.217	Acanthochromis_polyacanthus
ENSPMEG00000006000	ncl	61	40.084	ENSAPOG00000014534	-	67	41.969	Acanthochromis_polyacanthus
ENSPMEG00000006000	ncl	51	76.064	ENSACIG00000013234	ncl	71	67.467	Amphilophus_citrinellus
ENSPMEG00000006000	ncl	52	41.414	ENSAOCG00000014792	-	61	40.885	Amphiprion_ocellaris
ENSPMEG00000006000	ncl	52	41.667	ENSAPEG00000013612	-	60	41.146	Amphiprion_percula
ENSPMEG00000006000	ncl	65	41.700	ENSATEG00000019862	-	80	45.361	Anabas_testudineus
ENSPMEG00000006000	ncl	62	80.087	ENSATEG00000013343	ncl	66	81.169	Anabas_testudineus
ENSPMEG00000006000	ncl	51	58.639	ENSAPLG00000012897	-	63	59.162	Anas_platyrhynchos
ENSPMEG00000006000	ncl	50	62.992	ENSACAG00000001006	-	52	61.680	Anolis_carolinensis
ENSPMEG00000006000	ncl	63	67.639	ENSAMXG00000001647	ncl	80	71.572	Astyanax_mexicanus
ENSPMEG00000006000	ncl	51	62.368	ENSCPBG00000016444	-	56	62.005	Chrysemys_picta_bellii
ENSPMEG00000006000	ncl	64	78.364	ENSCSEG00000015089	ncl	69	74.242	Cynoglossus_semilaevis
ENSPMEG00000006000	ncl	72	87.139	ENSCVAG00000012600	ncl	67	85.776	Cyprinodon_variegatus
ENSPMEG00000006000	ncl	57	74.171	ENSDARG00000002710	ncl	79	74.757	Danio_rerio
ENSPMEG00000006000	ncl	57	46.099	ENSDNOG00000040257	-	63	45.478	Dasypus_novemcinctus
ENSPMEG00000006000	ncl	57	46.226	ENSELUG00000022826	-	80	48.257	Esox_lucius
ENSPMEG00000006000	ncl	57	73.176	ENSELUG00000006033	ncl	56	73.810	Esox_lucius
ENSPMEG00000006000	ncl	51	60.156	ENSFALG00000007592	-	55	59.896	Ficedula_albicollis
ENSPMEG00000006000	ncl	65	67.368	ENSGMOG00000001341	ncl	72	65.011	Gadus_morhua
ENSPMEG00000006000	ncl	62	93.654	ENSGAFG00000015375	ncl	62	93.668	Gambusia_affinis
ENSPMEG00000006000	ncl	57	75.229	ENSGACG00000008970	ncl	69	72.479	Gasterosteus_aculeatus
ENSPMEG00000006000	ncl	51	63.158	ENSGAGG00000013330	-	56	62.797	Gopherus_agassizii
ENSPMEG00000006000	ncl	50	78.378	ENSHBUG00000006869	ncl	66	75.484	Haplochromis_burtoni
ENSPMEG00000006000	ncl	73	82.816	ENSKMAG00000008111	ncl	65	78.603	Kryptolebias_marmoratus
ENSPMEG00000006000	ncl	62	41.226	ENSLBEG00000007915	-	66	43.188	Labrus_bergylta
ENSPMEG00000006000	ncl	58	81.647	ENSLBEG00000019073	ncl	68	78.448	Labrus_bergylta
ENSPMEG00000006000	ncl	52	52.956	ENSLACG00000022167	-	76	54.167	Latimeria_chalumnae
ENSPMEG00000006000	ncl	78	63.208	ENSLACG00000009328	ncl	55	64.754	Latimeria_chalumnae
ENSPMEG00000006000	ncl	52	41.414	ENSMAMG00000003479	-	69	40.625	Mastacembelus_armatus
ENSPMEG00000006000	ncl	86	80.435	ENSMAMG00000002086	ncl	56	80.519	Mastacembelus_armatus
ENSPMEG00000006000	ncl	58	68.941	ENSMZEG00005017438	ncl	66	75.322	Maylandia_zebra
ENSPMEG00000006000	ncl	50	59.511	ENSMGAG00000008147	-	85	59.239	Meleagris_gallopavo
ENSPMEG00000006000	ncl	63	56.298	ENSMODG00000002470	-	54	55.128	Monodelphis_domestica
ENSPMEG00000006000	ncl	87	66.361	ENSMALG00000014827	ncl	67	78.391	Monopterus_albus
ENSPMEG00000006000	ncl	51	58.073	ENSMEUG00000012335	-	55	57.180	Notamacropus_eugenii
ENSPMEG00000006000	ncl	51	37.968	ENSONIG00000010631	-	97	38.400	Oreochromis_niloticus
ENSPMEG00000006000	ncl	64	77.197	ENSONIG00000012508	ncl	65	75.594	Oreochromis_niloticus
ENSPMEG00000006000	ncl	53	58.706	ENSOANG00000008732	-	61	60.104	Ornithorhynchus_anatinus
ENSPMEG00000006000	ncl	58	82.353	ENSORLG00000007055	ncl	64	80.300	Oryzias_latipes
ENSPMEG00000006000	ncl	56	37.529	ENSORLG00000004645	-	86	36.341	Oryzias_latipes
ENSPMEG00000006000	ncl	58	82.353	ENSORLG00020017943	ncl	64	80.300	Oryzias_latipes_hni
ENSPMEG00000006000	ncl	53	38.142	ENSORLG00020003497	-	74	36.815	Oryzias_latipes_hni
ENSPMEG00000006000	ncl	53	38.308	ENSORLG00015006613	-	77	37.076	Oryzias_latipes_hsok
ENSPMEG00000006000	ncl	54	37.562	ENSOMEG00000015864	-	81	37.173	Oryzias_melastigma
ENSPMEG00000006000	ncl	52	82.415	ENSOMEG00000020786	ncl	63	79.618	Oryzias_melastigma
ENSPMEG00000006000	ncl	57	73.697	ENSPKIG00000002604	ncl	65	71.490	Paramormyrops_kingsleyae
ENSPMEG00000006000	ncl	57	75.714	ENSPMGG00000004709	ncl	99	71.391	Periophthalmus_magnuspinnatus
ENSPMEG00000006000	ncl	51	57.584	ENSPCIG00000003293	-	54	56.667	Phascolarctos_cinereus
ENSPMEG00000006000	ncl	100	99.457	ENSPFOG00000024205	ncl	100	99.457	Poecilia_formosa
ENSPMEG00000006000	ncl	100	98.098	ENSPLAG00000024026	ncl	100	98.098	Poecilia_latipinna
ENSPMEG00000006000	ncl	63	78.378	ENSPNYG00000020494	ncl	66	75.647	Pundamilia_nyererei
ENSPMEG00000006000	ncl	53	51.698	ENSSHAG00000007489	-	50	50.758	Sarcophilus_harrisii
ENSPMEG00000006000	ncl	60	71.300	ENSSFOG00015008583	ncl	58	76.471	Scleropages_formosus
ENSPMEG00000006000	ncl	51	43.417	ENSSFOG00015013153	-	76	44.551	Scleropages_formosus
ENSPMEG00000006000	ncl	57	41.630	ENSSMAG00000007582	-	61	44.357	Scophthalmus_maximus
ENSPMEG00000006000	ncl	58	73.131	ENSSMAG00000021241	ncl	56	73.364	Scophthalmus_maximus
ENSPMEG00000006000	ncl	66	37.452	ENSSDUG00000010922	-	70	41.558	Seriola_dumerili
ENSPMEG00000006000	ncl	52	83.508	ENSSDUG00000006128	ncl	87	83.202	Seriola_dumerili
ENSPMEG00000006000	ncl	86	83.683	ENSSLDG00000002012	ncl	61	73.377	Seriola_lalandi_dorsalis
ENSPMEG00000006000	ncl	55	42.199	ENSSLDG00000015784	-	65	41.775	Seriola_lalandi_dorsalis
ENSPMEG00000006000	ncl	62	54.200	ENSSPUG00000008244	-	61	57.431	Sphenodon_punctatus
ENSPMEG00000006000	ncl	52	43.655	ENSSPAG00000001859	-	61	42.593	Stegastes_partitus
ENSPMEG00000006000	ncl	50	60.471	ENSTGUG00000009782	-	60	59.686	Taeniopygia_guttata
ENSPMEG00000006000	ncl	54	76.515	ENSTNIG00000012186	ncl	89	72.294	Tetraodon_nigroviridis
ENSPMEG00000006000	ncl	50	63.660	ENSXETG00000009517	ncl	54	63.130	Xenopus_tropicalis
ENSPMEG00000006000	ncl	72	56.000	ENSXCOG00000003524	ncl	99	75.694	Xiphophorus_couchianus
ENSPMEG00000006000	ncl	54	39.753	ENSXCOG00000007369	-	89	40.789	Xiphophorus_couchianus
ENSPMEG00000006000	ncl	64	94.503	ENSXMAG00000005914	ncl	65	94.726	Xiphophorus_maculatus