EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000006227 (Gene tree)
Gene ID: 106917097
Gene Symbol: rtcb
Alias: -
Full Name: RNA 2'%2C3'-cyclic phosphate and 5'-OH ligase
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 3832 bases
Position: chrKQ551219.1:268388-272219
Accession: 106917097
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000004882	RtcB	PF01139.17	6e-147	1	1
ENSPMEP00000024115	RtcB	PF01139.17	1.9e-142	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000008437	-	1795	XM_014985807	ENSPMEP00000004882	505 (aa)	XP_014841293	UPI0004448E2F
ENSPMET00000008454	-	1515	-	ENSPMEP00000024115	504 (aa)	-	-

Gene Model

Click here to download ENSPMEG00000006227's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000006227's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000006227	rtcb	100	95.248	ENSG00000100220	RTCB	100	95.248	Homo_sapiens
ENSPMEG00000006227	rtcb	100	97.822	ENSAPOG00000006040	rtcb	100	97.822	Acanthochromis_polyacanthus
ENSPMEG00000006227	rtcb	100	95.248	ENSAMEG00000016152	RTCB	100	95.248	Ailuropoda_melanoleuca
ENSPMEG00000006227	rtcb	100	93.254	ENSACIG00000009083	rtcb	100	93.254	Amphilophus_citrinellus
ENSPMEG00000006227	rtcb	100	97.822	ENSAOCG00000005662	rtcb	100	98.913	Amphiprion_ocellaris
ENSPMEG00000006227	rtcb	96	93.224	ENSAPEG00000024653	rtcb	100	93.224	Amphiprion_percula
ENSPMEG00000006227	rtcb	100	97.822	ENSAPEG00000024701	rtcb	100	97.822	Amphiprion_percula
ENSPMEG00000006227	rtcb	100	97.426	ENSATEG00000000618	rtcb	100	97.426	Anabas_testudineus
ENSPMEG00000006227	rtcb	100	91.715	ENSACAG00000014817	RTCB	100	91.715	Anolis_carolinensis
ENSPMEG00000006227	rtcb	72	97.222	ENSANAG00000023724	-	84	97.222	Aotus_nancymaae
ENSPMEG00000006227	rtcb	100	80.594	ENSANAG00000018191	-	91	80.594	Aotus_nancymaae
ENSPMEG00000006227	rtcb	100	96.436	ENSACLG00000008367	rtcb	100	96.957	Astatotilapia_calliptera
ENSPMEG00000006227	rtcb	100	95.446	ENSAMXG00000042320	rtcb	100	95.446	Astyanax_mexicanus
ENSPMEG00000006227	rtcb	100	95.446	ENSBTAG00000011070	RTCB	100	95.446	Bos_taurus
ENSPMEG00000006227	rtcb	100	74.653	WBGene00008877	rtcb-1	100	74.653	Caenorhabditis_elegans
ENSPMEG00000006227	rtcb	100	95.050	ENSCJAG00000006128	RTCB	100	95.050	Callithrix_jacchus
ENSPMEG00000006227	rtcb	100	91.089	ENSCAFG00000010789	-	100	91.089	Canis_familiaris
ENSPMEG00000006227	rtcb	100	95.248	ENSCAFG00000001785	RTCB	100	95.248	Canis_familiaris
ENSPMEG00000006227	rtcb	100	95.248	ENSCAFG00020004890	-	100	95.248	Canis_lupus_dingo
ENSPMEG00000006227	rtcb	87	91.136	ENSCAFG00020018953	-	99	91.136	Canis_lupus_dingo
ENSPMEG00000006227	rtcb	100	95.446	ENSCHIG00000027009	-	100	95.446	Capra_hircus
ENSPMEG00000006227	rtcb	100	94.851	ENSTSYG00000012320	RTCB	100	94.851	Carlito_syrichta
ENSPMEG00000006227	rtcb	94	95.178	ENSCAPG00000011647	RTCB	96	95.178	Cavia_aperea
ENSPMEG00000006227	rtcb	100	95.050	ENSCCAG00000000618	RTCB	100	95.050	Cebus_capucinus
ENSPMEG00000006227	rtcb	100	95.050	ENSCATG00000033424	RTCB	100	95.050	Cercocebus_atys
ENSPMEG00000006227	rtcb	100	95.248	ENSCLAG00000007997	RTCB	100	95.248	Chinchilla_lanigera
ENSPMEG00000006227	rtcb	100	94.851	ENSCSAG00000008351	RTCB	100	94.851	Chlorocebus_sabaeus
ENSPMEG00000006227	rtcb	100	81.386	ENSCHOG00000009123	RTCB	100	81.386	Choloepus_hoffmanni
ENSPMEG00000006227	rtcb	100	93.861	ENSCPBG00000023184	RTCB	100	93.861	Chrysemys_picta_bellii
ENSPMEG00000006227	rtcb	100	82.970	ENSCING00000003830	-	100	82.970	Ciona_intestinalis
ENSPMEG00000006227	rtcb	100	83.168	ENSCSAVG00000008124	-	99	83.168	Ciona_savignyi
ENSPMEG00000006227	rtcb	100	91.287	ENSCANG00000001891	RTCB	100	91.287	Colobus_angolensis_palliatus
ENSPMEG00000006227	rtcb	100	94.851	ENSCGRG00001011173	Rtcb	100	94.851	Cricetulus_griseus_chok1gshd
ENSPMEG00000006227	rtcb	99	90.457	ENSCGRG00000009587	-	99	90.457	Cricetulus_griseus_crigri
ENSPMEG00000006227	rtcb	100	96.238	ENSCSEG00000003986	rtcb	100	96.238	Cynoglossus_semilaevis
ENSPMEG00000006227	rtcb	82	97.596	ENSCVAG00000000569	rtcb	95	97.596	Cyprinodon_variegatus
ENSPMEG00000006227	rtcb	100	96.040	ENSDARG00000101047	rtcb	100	96.040	Danio_rerio
ENSPMEG00000006227	rtcb	80	91.155	ENSDNOG00000012425	RTCB	99	91.155	Dasypus_novemcinctus
ENSPMEG00000006227	rtcb	100	94.455	ENSDORG00000010855	Rtcb	100	94.455	Dipodomys_ordii
ENSPMEG00000006227	rtcb	99	85.487	FBgn0032781	RtcB	99	85.487	Drosophila_melanogaster
ENSPMEG00000006227	rtcb	100	89.109	ENSETEG00000001988	RTCB	100	89.109	Echinops_telfairi
ENSPMEG00000006227	rtcb	100	86.139	ENSEBUG00000014235	rtcb	100	86.139	Eptatretus_burgeri
ENSPMEG00000006227	rtcb	100	95.050	ENSEASG00005019059	RTCB	100	95.050	Equus_asinus_asinus
ENSPMEG00000006227	rtcb	100	95.050	ENSECAG00000023998	RTCB	100	95.050	Equus_caballus
ENSPMEG00000006227	rtcb	89	86.353	ENSEEUG00000006251	RTCB	100	86.353	Erinaceus_europaeus
ENSPMEG00000006227	rtcb	100	82.987	ENSELUG00000009275	rtcb	100	82.987	Esox_lucius
ENSPMEG00000006227	rtcb	100	95.248	ENSFCAG00000026480	RTCB	100	95.248	Felis_catus
ENSPMEG00000006227	rtcb	100	94.653	ENSFALG00000013334	RTCB	100	94.653	Ficedula_albicollis
ENSPMEG00000006227	rtcb	100	95.050	ENSFDAG00000018150	RTCB	100	95.050	Fukomys_damarensis
ENSPMEG00000006227	rtcb	100	98.416	ENSFHEG00000009595	rtcb	100	98.416	Fundulus_heteroclitus
ENSPMEG00000006227	rtcb	100	92.673	ENSGMOG00000018882	rtcb	100	92.673	Gadus_morhua
ENSPMEG00000006227	rtcb	100	94.455	ENSGALG00000012611	RTCB	100	94.455	Gallus_gallus
ENSPMEG00000006227	rtcb	100	99.604	ENSGAFG00000004198	rtcb	100	99.604	Gambusia_affinis
ENSPMEG00000006227	rtcb	100	95.446	ENSGACG00000000586	rtcb	100	95.446	Gasterosteus_aculeatus
ENSPMEG00000006227	rtcb	93	93.404	ENSGAGG00000019133	RTCB	98	93.404	Gopherus_agassizii
ENSPMEG00000006227	rtcb	100	95.248	ENSGGOG00000011402	RTCB	100	95.248	Gorilla_gorilla
ENSPMEG00000006227	rtcb	100	96.436	ENSHBUG00000020571	rtcb	100	96.436	Haplochromis_burtoni
ENSPMEG00000006227	rtcb	100	95.050	ENSHGLG00000004492	RTCB	100	95.050	Heterocephalus_glaber_female
ENSPMEG00000006227	rtcb	93	68.008	ENSHGLG00000001066	-	99	68.008	Heterocephalus_glaber_female
ENSPMEG00000006227	rtcb	100	95.050	ENSHGLG00100008965	RTCB	100	95.050	Heterocephalus_glaber_male
ENSPMEG00000006227	rtcb	100	93.886	ENSHCOG00000006450	rtcb	100	93.886	Hippocampus_comes
ENSPMEG00000006227	rtcb	100	95.248	ENSIPUG00000015443	rtcb	100	95.248	Ictalurus_punctatus
ENSPMEG00000006227	rtcb	100	95.050	ENSSTOG00000003878	RTCB	100	95.050	Ictidomys_tridecemlineatus
ENSPMEG00000006227	rtcb	100	94.851	ENSJJAG00000010667	Rtcb	100	94.851	Jaculus_jaculus
ENSPMEG00000006227	rtcb	100	97.624	ENSKMAG00000013178	rtcb	100	97.624	Kryptolebias_marmoratus
ENSPMEG00000006227	rtcb	100	96.832	ENSLBEG00000010566	RTCB	100	96.832	Labrus_bergylta
ENSPMEG00000006227	rtcb	100	95.644	ENSLBEG00000000214	rtcb	100	95.644	Labrus_bergylta
ENSPMEG00000006227	rtcb	100	94.653	ENSLACG00000013033	RTCB	100	94.653	Latimeria_chalumnae
ENSPMEG00000006227	rtcb	100	95.446	ENSLOCG00000016515	rtcb	99	95.446	Lepisosteus_oculatus
ENSPMEG00000006227	rtcb	100	94.455	ENSLAFG00000002082	RTCB	100	94.455	Loxodonta_africana
ENSPMEG00000006227	rtcb	100	94.851	ENSMFAG00000034419	RTCB	100	94.851	Macaca_fascicularis
ENSPMEG00000006227	rtcb	100	94.851	ENSMMUG00000006720	RTCB	100	94.851	Macaca_mulatta
ENSPMEG00000006227	rtcb	100	94.851	ENSMNEG00000040669	RTCB	100	94.851	Macaca_nemestrina
ENSPMEG00000006227	rtcb	100	95.050	ENSMLEG00000040505	RTCB	100	95.050	Mandrillus_leucophaeus
ENSPMEG00000006227	rtcb	100	97.426	ENSMAMG00000020676	rtcb	100	97.426	Mastacembelus_armatus
ENSPMEG00000006227	rtcb	100	96.436	ENSMZEG00005018942	rtcb	100	96.436	Maylandia_zebra
ENSPMEG00000006227	rtcb	100	94.083	ENSMGAG00000012805	RTCB	100	94.083	Meleagris_gallopavo
ENSPMEG00000006227	rtcb	60	100.000	ENSMAUG00000008301	Rtcb	100	100.000	Mesocricetus_auratus
ENSPMEG00000006227	rtcb	100	75.842	ENSMICG00000036677	-	100	75.842	Microcebus_murinus
ENSPMEG00000006227	rtcb	100	95.050	ENSMICG00000013303	-	100	95.050	Microcebus_murinus
ENSPMEG00000006227	rtcb	100	94.851	ENSMOCG00000002440	Rtcb	100	94.851	Microtus_ochrogaster
ENSPMEG00000006227	rtcb	100	96.832	ENSMMOG00000005987	rtcb	100	96.832	Mola_mola
ENSPMEG00000006227	rtcb	100	94.653	ENSMODG00000001414	RTCB	100	94.653	Monodelphis_domestica
ENSPMEG00000006227	rtcb	100	97.228	ENSMALG00000007603	rtcb	100	97.228	Monopterus_albus
ENSPMEG00000006227	rtcb	100	94.851	MGP_CAROLIEiJ_G0015689	Rtcb	100	94.851	Mus_caroli
ENSPMEG00000006227	rtcb	100	94.851	ENSMUSG00000001783	Rtcb	100	94.851	Mus_musculus
ENSPMEG00000006227	rtcb	100	94.851	MGP_PahariEiJ_G0031396	Rtcb	100	94.851	Mus_pahari
ENSPMEG00000006227	rtcb	100	94.851	MGP_SPRETEiJ_G0016507	Rtcb	100	94.851	Mus_spretus
ENSPMEG00000006227	rtcb	100	95.248	ENSMPUG00000012285	RTCB	100	95.248	Mustela_putorius_furo
ENSPMEG00000006227	rtcb	100	92.308	ENSMLUG00000007803	RTCB	100	92.308	Myotis_lucifugus
ENSPMEG00000006227	rtcb	72	100.000	ENSNGAG00000005093	Rtcb	100	100.000	Nannospalax_galili
ENSPMEG00000006227	rtcb	100	96.634	ENSNBRG00000017202	rtcb	100	96.634	Neolamprologus_brichardi
ENSPMEG00000006227	rtcb	100	95.248	ENSNLEG00000004960	RTCB	100	95.248	Nomascus_leucogenys
ENSPMEG00000006227	rtcb	88	100.000	ENSMEUG00000007809	-	88	100.000	Notamacropus_eugenii
ENSPMEG00000006227	rtcb	73	100.000	ENSOPRG00000003488	RTCB	79	100.000	Ochotona_princeps
ENSPMEG00000006227	rtcb	100	63.366	ENSODEG00000005042	-	100	63.366	Octodon_degus
ENSPMEG00000006227	rtcb	82	100.000	ENSODEG00000013033	-	100	100.000	Octodon_degus
ENSPMEG00000006227	rtcb	100	97.228	ENSONIG00000007474	rtcb	100	97.228	Oreochromis_niloticus
ENSPMEG00000006227	rtcb	100	94.257	ENSOANG00000005524	RTCB	100	94.257	Ornithorhynchus_anatinus
ENSPMEG00000006227	rtcb	93	94.894	ENSOCUG00000008270	RTCB	96	94.894	Oryctolagus_cuniculus
ENSPMEG00000006227	rtcb	100	97.228	ENSORLG00000020093	rtcb	100	97.228	Oryzias_latipes
ENSPMEG00000006227	rtcb	100	97.228	ENSORLG00020003706	rtcb	100	97.228	Oryzias_latipes_hni
ENSPMEG00000006227	rtcb	100	97.426	ENSORLG00015002968	rtcb	100	97.426	Oryzias_latipes_hsok
ENSPMEG00000006227	rtcb	100	96.832	ENSOMEG00000021278	rtcb	100	96.832	Oryzias_melastigma
ENSPMEG00000006227	rtcb	100	94.455	ENSOGAG00000001425	RTCB	100	94.455	Otolemur_garnettii
ENSPMEG00000006227	rtcb	100	95.446	ENSOARG00000018008	RTCB	100	95.446	Ovis_aries
ENSPMEG00000006227	rtcb	100	95.248	ENSPPAG00000028667	RTCB	100	95.248	Pan_paniscus
ENSPMEG00000006227	rtcb	100	95.248	ENSPPRG00000004038	RTCB	100	95.248	Panthera_pardus
ENSPMEG00000006227	rtcb	94	91.368	ENSPTIG00000020499	RTCB	97	92.421	Panthera_tigris_altaica
ENSPMEG00000006227	rtcb	100	95.248	ENSPTRG00000014287	RTCB	100	95.248	Pan_troglodytes
ENSPMEG00000006227	rtcb	100	94.851	ENSPANG00000016035	RTCB	100	94.851	Papio_anubis
ENSPMEG00000006227	rtcb	100	94.653	ENSPKIG00000001881	rtcb	100	94.653	Paramormyrops_kingsleyae
ENSPMEG00000006227	rtcb	91	95.000	ENSPSIG00000011690	RTCB	100	95.000	Pelodiscus_sinensis
ENSPMEG00000006227	rtcb	100	96.634	ENSPMGG00000016672	rtcb	100	96.634	Periophthalmus_magnuspinnatus
ENSPMEG00000006227	rtcb	100	94.851	ENSPEMG00000019548	Rtcb	100	94.851	Peromyscus_maniculatus_bairdii
ENSPMEG00000006227	rtcb	100	91.683	ENSPMAG00000005657	rtcb	100	91.683	Petromyzon_marinus
ENSPMEG00000006227	rtcb	100	94.653	ENSPCIG00000009467	RTCB	100	94.653	Phascolarctos_cinereus
ENSPMEG00000006227	rtcb	100	100.000	ENSPFOG00000003058	rtcb	100	100.000	Poecilia_formosa
ENSPMEG00000006227	rtcb	100	99.802	ENSPLAG00000017663	rtcb	100	99.802	Poecilia_latipinna
ENSPMEG00000006227	rtcb	100	99.406	ENSPREG00000018467	rtcb	100	99.406	Poecilia_reticulata
ENSPMEG00000006227	rtcb	100	95.248	ENSPPYG00000011752	RTCB	100	95.248	Pongo_abelii
ENSPMEG00000006227	rtcb	93	78.178	ENSPCAG00000013641	RTCB	100	78.178	Procavia_capensis
ENSPMEG00000006227	rtcb	100	95.050	ENSPCOG00000017243	RTCB	100	95.050	Propithecus_coquereli
ENSPMEG00000006227	rtcb	93	94.043	ENSPVAG00000002380	RTCB	100	94.043	Pteropus_vampyrus
ENSPMEG00000006227	rtcb	100	96.436	ENSPNYG00000022760	rtcb	100	96.436	Pundamilia_nyererei
ENSPMEG00000006227	rtcb	100	96.040	ENSPNAG00000009209	rtcb	100	96.040	Pygocentrus_nattereri
ENSPMEG00000006227	rtcb	100	94.851	ENSRNOG00000004813	Rtcb	100	94.851	Rattus_norvegicus
ENSPMEG00000006227	rtcb	100	86.957	ENSRBIG00000042090	RTCB	100	86.957	Rhinopithecus_bieti
ENSPMEG00000006227	rtcb	100	90.297	ENSSBOG00000020085	-	100	90.297	Saimiri_boliviensis_boliviensis
ENSPMEG00000006227	rtcb	94	95.992	ENSSHAG00000016277	RTCB	100	95.992	Sarcophilus_harrisii
ENSPMEG00000006227	rtcb	100	93.861	ENSSFOG00015011572	RTCB	100	93.861	Scleropages_formosus
ENSPMEG00000006227	rtcb	100	95.248	ENSSFOG00015000763	rtcb	100	95.248	Scleropages_formosus
ENSPMEG00000006227	rtcb	100	93.267	ENSSMAG00000005096	rtcb	100	93.267	Scophthalmus_maximus
ENSPMEG00000006227	rtcb	100	96.238	ENSSDUG00000012605	rtcb	100	96.238	Seriola_dumerili
ENSPMEG00000006227	rtcb	100	96.238	ENSSLDG00000019458	rtcb	100	96.238	Seriola_lalandi_dorsalis
ENSPMEG00000006227	rtcb	66	100.000	ENSSARG00000004799	-	70	100.000	Sorex_araneus
ENSPMEG00000006227	rtcb	100	93.861	ENSSPUG00000012814	RTCB	100	93.861	Sphenodon_punctatus
ENSPMEG00000006227	rtcb	100	97.822	ENSSPAG00000004623	rtcb	100	97.822	Stegastes_partitus
ENSPMEG00000006227	rtcb	100	95.248	ENSSSCG00000000158	RTCB	100	95.248	Sus_scrofa
ENSPMEG00000006227	rtcb	100	94.653	ENSTGUG00000010947	RTCB	99	94.653	Taeniopygia_guttata
ENSPMEG00000006227	rtcb	91	97.609	ENSTRUG00000009880	rtcb	100	97.609	Takifugu_rubripes
ENSPMEG00000006227	rtcb	100	95.050	ENSTNIG00000002484	rtcb	100	95.050	Tetraodon_nigroviridis
ENSPMEG00000006227	rtcb	100	81.782	ENSTBEG00000004418	RTCB	100	81.782	Tupaia_belangeri
ENSPMEG00000006227	rtcb	93	94.468	ENSTTRG00000006417	RTCB	100	94.468	Tursiops_truncatus
ENSPMEG00000006227	rtcb	100	95.248	ENSUAMG00000022792	RTCB	100	95.248	Ursus_americanus
ENSPMEG00000006227	rtcb	100	95.248	ENSUMAG00000017225	RTCB	100	95.248	Ursus_maritimus
ENSPMEG00000006227	rtcb	100	95.050	ENSVPAG00000005375	RTCB	100	95.050	Vicugna_pacos
ENSPMEG00000006227	rtcb	100	95.248	ENSVVUG00000023408	RTCB	100	95.577	Vulpes_vulpes
ENSPMEG00000006227	rtcb	100	93.465	ENSXETG00000011523	rtcb	100	93.465	Xenopus_tropicalis
ENSPMEG00000006227	rtcb	100	99.604	ENSXMAG00000002855	rtcb	100	99.604	Xiphophorus_maculatus