EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000006402 (Gene tree)
Gene ID: 106907384
Gene Symbol: usb1
Alias: -
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 8613 bases
Position: chrLMXC01026229.1:66609-75221
Accession: 106907384
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000005075	HVSL	PF09749.9	3.1e-65	1	1
ENSPMEP00000024249	HVSL	PF09749.9	3.1e-65	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000008113	-	1124	XM_014973063	ENSPMEP00000005075	278 (aa)	XP_014828549	UPI00072EE9FA
ENSPMET00000008122	-	4642	-	ENSPMEP00000024249	278 (aa)	-	UPI00072EE9FA

Gene Model

Click here to download ENSPMEG00000006402's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000006402's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000006402	usb1	82	51.754	ENSG00000103005	USB1	98	53.110	Homo_sapiens
ENSPMEG00000006402	usb1	99	71.831	ENSAPOG00000011942	usb1	100	71.831	Acanthochromis_polyacanthus
ENSPMEG00000006402	usb1	84	52.137	ENSAMEG00000017205	USB1	98	49.638	Ailuropoda_melanoleuca
ENSPMEG00000006402	usb1	85	73.109	ENSACIG00000012234	usb1	100	67.986	Amphilophus_citrinellus
ENSPMEG00000006402	usb1	99	74.205	ENSAOCG00000014831	usb1	99	74.205	Amphiprion_ocellaris
ENSPMEG00000006402	usb1	99	73.498	ENSAPEG00000000296	usb1	99	73.498	Amphiprion_percula
ENSPMEG00000006402	usb1	99	72.954	ENSATEG00000009348	usb1	99	72.954	Anabas_testudineus
ENSPMEG00000006402	usb1	81	55.310	ENSAPLG00000002756	USB1	100	55.310	Anas_platyrhynchos
ENSPMEG00000006402	usb1	82	51.965	ENSACAG00000015481	USB1	100	51.965	Anolis_carolinensis
ENSPMEG00000006402	usb1	82	51.316	ENSANAG00000035640	USB1	98	47.292	Aotus_nancymaae
ENSPMEG00000006402	usb1	91	72.332	ENSACLG00000020586	usb1	100	70.175	Astatotilapia_calliptera
ENSPMEG00000006402	usb1	81	65.778	ENSAMXG00000040146	usb1	95	56.552	Astyanax_mexicanus
ENSPMEG00000006402	usb1	99	48.014	ENSBTAG00000015758	USB1	98	48.014	Bos_taurus
ENSPMEG00000006402	usb1	82	52.193	ENSCJAG00000011733	USB1	98	48.014	Callithrix_jacchus
ENSPMEG00000006402	usb1	99	47.273	ENSCAFG00000008556	USB1	71	48.551	Canis_familiaris
ENSPMEG00000006402	usb1	99	48.364	ENSCAFG00020009263	USB1	98	48.364	Canis_lupus_dingo
ENSPMEG00000006402	usb1	99	48.014	ENSCHIG00000024290	USB1	98	48.014	Capra_hircus
ENSPMEG00000006402	usb1	82	51.754	ENSTSYG00000006997	USB1	98	47.653	Carlito_syrichta
ENSPMEG00000006402	usb1	81	42.222	ENSCAPG00000009057	USB1	96	42.222	Cavia_aperea
ENSPMEG00000006402	usb1	99	48.188	ENSCPOG00000014325	USB1	98	48.188	Cavia_porcellus
ENSPMEG00000006402	usb1	82	51.754	ENSCCAG00000022132	USB1	98	47.653	Cebus_capucinus
ENSPMEG00000006402	usb1	82	52.193	ENSCATG00000032174	USB1	98	48.014	Cercocebus_atys
ENSPMEG00000006402	usb1	62	51.445	ENSCLAG00000007363	USB1	87	53.595	Chinchilla_lanigera
ENSPMEG00000006402	usb1	82	52.193	ENSCSAG00000004783	USB1	98	48.551	Chlorocebus_sabaeus
ENSPMEG00000006402	usb1	82	55.702	ENSCPBG00000026943	USB1	98	51.079	Chrysemys_picta_bellii
ENSPMEG00000006402	usb1	81	34.310	ENSCING00000011490	-	97	31.359	Ciona_intestinalis
ENSPMEG00000006402	usb1	81	33.473	ENSCSAVG00000000894	-	91	30.216	Ciona_savignyi
ENSPMEG00000006402	usb1	81	52.423	ENSCANG00000037135	USB1	98	48.727	Colobus_angolensis_palliatus
ENSPMEG00000006402	usb1	99	50.362	ENSCGRG00001011243	USB1	98	50.362	Cricetulus_griseus_chok1gshd
ENSPMEG00000006402	usb1	99	50.362	ENSCGRG00000013252	USB1	98	50.362	Cricetulus_griseus_crigri
ENSPMEG00000006402	usb1	99	67.870	ENSCSEG00000013881	usb1	99	67.870	Cynoglossus_semilaevis
ENSPMEG00000006402	usb1	81	83.700	ENSCVAG00000009252	usb1	97	83.700	Cyprinodon_variegatus
ENSPMEG00000006402	usb1	85	58.824	ENSDARG00000003841	usb1	100	55.357	Danio_rerio
ENSPMEG00000006402	usb1	99	46.739	ENSDORG00000001888	Usb1	98	48.375	Dipodomys_ordii
ENSPMEG00000006402	usb1	74	44.019	FBgn0037713	CG16790	79	42.308	Drosophila_melanogaster
ENSPMEG00000006402	usb1	99	41.877	ENSETEG00000019682	USB1	98	41.877	Echinops_telfairi
ENSPMEG00000006402	usb1	97	40.659	ENSEBUG00000005889	usb1	93	40.580	Eptatretus_burgeri
ENSPMEG00000006402	usb1	99	47.826	ENSEASG00005005484	USB1	98	47.826	Equus_asinus_asinus
ENSPMEG00000006402	usb1	99	47.464	ENSECAG00000019493	USB1	90	47.464	Equus_caballus
ENSPMEG00000006402	usb1	62	48.555	ENSEEUG00000000154	USB1	58	49.673	Erinaceus_europaeus
ENSPMEG00000006402	usb1	91	61.265	ENSELUG00000010974	usb1	100	59.928	Esox_lucius
ENSPMEG00000006402	usb1	84	50.427	ENSFCAG00000002693	USB1	98	47.101	Felis_catus
ENSPMEG00000006402	usb1	81	54.185	ENSFALG00000006876	USB1	98	50.000	Ficedula_albicollis
ENSPMEG00000006402	usb1	99	46.739	ENSFDAG00000010052	USB1	98	46.739	Fukomys_damarensis
ENSPMEG00000006402	usb1	88	83.607	ENSFHEG00000012334	usb1	98	83.607	Fundulus_heteroclitus
ENSPMEG00000006402	usb1	81	70.982	ENSGMOG00000004228	usb1	100	70.982	Gadus_morhua
ENSPMEG00000006402	usb1	90	50.996	ENSGALG00000035604	USB1	98	48.921	Gallus_gallus
ENSPMEG00000006402	usb1	100	96.043	ENSGAFG00000021890	usb1	100	96.043	Gambusia_affinis
ENSPMEG00000006402	usb1	99	69.675	ENSGACG00000003257	usb1	99	69.675	Gasterosteus_aculeatus
ENSPMEG00000006402	usb1	99	52.878	ENSGAGG00000022572	USB1	98	52.878	Gopherus_agassizii
ENSPMEG00000006402	usb1	82	52.193	ENSGGOG00000017147	USB1	98	48.014	Gorilla_gorilla
ENSPMEG00000006402	usb1	91	72.332	ENSHBUG00000009823	usb1	100	70.423	Haplochromis_burtoni
ENSPMEG00000006402	usb1	99	47.101	ENSHGLG00000016078	USB1	96	47.101	Heterocephalus_glaber_female
ENSPMEG00000006402	usb1	99	47.101	ENSHGLG00100005562	USB1	96	47.101	Heterocephalus_glaber_male
ENSPMEG00000006402	usb1	78	73.394	ENSHCOG00000015633	usb1	99	65.455	Hippocampus_comes
ENSPMEG00000006402	usb1	99	56.055	ENSIPUG00000008601	usb1	100	56.055	Ictalurus_punctatus
ENSPMEG00000006402	usb1	99	48.188	ENSSTOG00000007548	USB1	98	48.736	Ictidomys_tridecemlineatus
ENSPMEG00000006402	usb1	99	48.551	ENSJJAG00000021859	Usb1	98	48.551	Jaculus_jaculus
ENSPMEG00000006402	usb1	94	75.862	ENSKMAG00000007200	usb1	99	74.126	Kryptolebias_marmoratus
ENSPMEG00000006402	usb1	89	67.600	ENSLBEG00000008452	usb1	86	65.818	Labrus_bergylta
ENSPMEG00000006402	usb1	80	53.982	ENSLACG00000000105	USB1	98	48.601	Latimeria_chalumnae
ENSPMEG00000006402	usb1	99	47.756	ENSLOCG00000000465	usb1	100	51.761	Lepisosteus_oculatus
ENSPMEG00000006402	usb1	99	39.583	ENSLAFG00000002267	USB1	98	38.356	Loxodonta_africana
ENSPMEG00000006402	usb1	82	52.193	ENSMFAG00000003926	USB1	98	48.014	Macaca_fascicularis
ENSPMEG00000006402	usb1	82	52.193	ENSMMUG00000022669	USB1	98	48.014	Macaca_mulatta
ENSPMEG00000006402	usb1	82	51.754	ENSMNEG00000042487	USB1	98	47.653	Macaca_nemestrina
ENSPMEG00000006402	usb1	82	52.193	ENSMLEG00000028756	USB1	98	48.014	Mandrillus_leucophaeus
ENSPMEG00000006402	usb1	99	74.910	ENSMAMG00000015092	usb1	99	74.910	Mastacembelus_armatus
ENSPMEG00000006402	usb1	91	72.332	ENSMZEG00005010008	usb1	100	70.423	Maylandia_zebra
ENSPMEG00000006402	usb1	99	49.275	ENSMAUG00000007832	Usb1	98	49.275	Mesocricetus_auratus
ENSPMEG00000006402	usb1	82	52.193	ENSMICG00000004900	USB1	98	48.014	Microcebus_murinus
ENSPMEG00000006402	usb1	99	50.000	ENSMOCG00000022647	Usb1	98	50.000	Microtus_ochrogaster
ENSPMEG00000006402	usb1	81	75.893	ENSMMOG00000000490	usb1	99	67.391	Mola_mola
ENSPMEG00000006402	usb1	78	53.670	ENSMODG00000014067	USB1	99	49.466	Monodelphis_domestica
ENSPMEG00000006402	usb1	90	73.494	ENSMALG00000005930	usb1	100	69.965	Monopterus_albus
ENSPMEG00000006402	usb1	99	49.275	MGP_CAROLIEiJ_G0031421	Usb1	98	49.275	Mus_caroli
ENSPMEG00000006402	usb1	99	48.913	ENSMUSG00000031792	Usb1	98	48.913	Mus_musculus
ENSPMEG00000006402	usb1	82	53.509	MGP_PahariEiJ_G0023019	Usb1	96	51.786	Mus_pahari
ENSPMEG00000006402	usb1	99	49.275	MGP_SPRETEiJ_G0032540	Usb1	98	47.842	Mus_spretus
ENSPMEG00000006402	usb1	84	50.420	ENSMPUG00000004684	USB1	94	47.500	Mustela_putorius_furo
ENSPMEG00000006402	usb1	82	53.070	ENSMLUG00000007400	USB1	98	53.070	Myotis_lucifugus
ENSPMEG00000006402	usb1	99	48.772	ENSNGAG00000009703	Usb1	98	50.362	Nannospalax_galili
ENSPMEG00000006402	usb1	91	66.008	ENSNBRG00000008747	usb1	100	73.023	Neolamprologus_brichardi
ENSPMEG00000006402	usb1	75	52.632	ENSNLEG00000003340	USB1	96	48.062	Nomascus_leucogenys
ENSPMEG00000006402	usb1	99	48.375	ENSODEG00000016214	USB1	98	48.375	Octodon_degus
ENSPMEG00000006402	usb1	99	71.277	ENSONIG00000011063	usb1	100	71.277	Oreochromis_niloticus
ENSPMEG00000006402	usb1	81	51.556	ENSOANG00000012118	USB1	94	51.556	Ornithorhynchus_anatinus
ENSPMEG00000006402	usb1	99	71.841	ENSORLG00000012479	usb1	100	71.841	Oryzias_latipes
ENSPMEG00000006402	usb1	87	75.104	ENSORLG00020018671	usb1	100	70.036	Oryzias_latipes_hni
ENSPMEG00000006402	usb1	94	71.923	ENSORLG00015009679	usb1	100	71.480	Oryzias_latipes_hsok
ENSPMEG00000006402	usb1	99	71.119	ENSOMEG00000012930	usb1	100	71.119	Oryzias_melastigma
ENSPMEG00000006402	usb1	88	47.154	ENSOGAG00000003273	USB1	98	45.487	Otolemur_garnettii
ENSPMEG00000006402	usb1	86	50.628	ENSOARG00000001107	USB1	91	50.628	Ovis_aries
ENSPMEG00000006402	usb1	82	51.754	ENSPPAG00000042137	USB1	98	47.653	Pan_paniscus
ENSPMEG00000006402	usb1	84	50.000	ENSPPRG00000024797	USB1	98	47.312	Panthera_pardus
ENSPMEG00000006402	usb1	84	49.573	ENSPTIG00000007506	USB1	98	46.953	Panthera_tigris_altaica
ENSPMEG00000006402	usb1	82	48.684	ENSPTRG00000008172	USB1	98	53.589	Pan_troglodytes
ENSPMEG00000006402	usb1	82	52.193	ENSPANG00000025138	USB1	98	48.014	Papio_anubis
ENSPMEG00000006402	usb1	83	64.655	ENSPKIG00000015109	usb1	99	56.187	Paramormyrops_kingsleyae
ENSPMEG00000006402	usb1	81	45.815	ENSPSIG00000004305	USB1	100	45.815	Pelodiscus_sinensis
ENSPMEG00000006402	usb1	80	67.265	ENSPMGG00000017725	usb1	98	59.273	Periophthalmus_magnuspinnatus
ENSPMEG00000006402	usb1	99	49.275	ENSPEMG00000016183	Usb1	98	48.913	Peromyscus_maniculatus_bairdii
ENSPMEG00000006402	usb1	78	52.968	ENSPMAG00000000462	usb1	92	52.968	Petromyzon_marinus
ENSPMEG00000006402	usb1	100	99.281	ENSPFOG00000011130	usb1	100	99.281	Poecilia_formosa
ENSPMEG00000006402	usb1	100	97.482	ENSPLAG00000009820	usb1	100	97.482	Poecilia_latipinna
ENSPMEG00000006402	usb1	88	97.131	ENSPREG00000001047	usb1	99	97.131	Poecilia_reticulata
ENSPMEG00000006402	usb1	77	48.837	ENSPPYG00000007401	USB1	98	45.076	Pongo_abelii
ENSPMEG00000006402	usb1	82	51.316	ENSPCOG00000022612	USB1	98	46.931	Propithecus_coquereli
ENSPMEG00000006402	usb1	99	46.931	ENSPVAG00000004613	USB1	98	46.931	Pteropus_vampyrus
ENSPMEG00000006402	usb1	99	68.310	ENSPNYG00000022262	usb1	100	70.070	Pundamilia_nyererei
ENSPMEG00000006402	usb1	81	66.222	ENSPNAG00000011736	usb1	100	55.219	Pygocentrus_nattereri
ENSPMEG00000006402	usb1	99	49.275	ENSRNOG00000013216	Usb1	98	49.275	Rattus_norvegicus
ENSPMEG00000006402	usb1	82	49.123	ENSRBIG00000044466	USB1	98	53.589	Rhinopithecus_bieti
ENSPMEG00000006402	usb1	82	52.193	ENSRROG00000029211	USB1	98	48.913	Rhinopithecus_roxellana
ENSPMEG00000006402	usb1	82	52.193	ENSSBOG00000029362	USB1	98	47.653	Saimiri_boliviensis_boliviensis
ENSPMEG00000006402	usb1	78	50.917	ENSSHAG00000006993	USB1	90	51.316	Sarcophilus_harrisii
ENSPMEG00000006402	usb1	82	65.236	ENSSFOG00015023663	usb1	91	59.170	Scleropages_formosus
ENSPMEG00000006402	usb1	99	67.905	ENSSMAG00000015834	usb1	100	67.905	Scophthalmus_maximus
ENSPMEG00000006402	usb1	81	79.556	ENSSDUG00000002949	usb1	100	70.357	Seriola_dumerili
ENSPMEG00000006402	usb1	91	75.984	ENSSLDG00000014174	usb1	100	74.021	Seriola_lalandi_dorsalis
ENSPMEG00000006402	usb1	77	55.349	ENSSPUG00000006741	USB1	100	55.349	Sphenodon_punctatus
ENSPMEG00000006402	usb1	99	72.535	ENSSPAG00000007484	usb1	99	72.535	Stegastes_partitus
ENSPMEG00000006402	usb1	99	48.375	ENSSSCG00000002807	USB1	98	49.097	Sus_scrofa
ENSPMEG00000006402	usb1	76	56.398	ENSTGUG00000004792	USB1	98	49.281	Taeniopygia_guttata
ENSPMEG00000006402	usb1	99	68.478	ENSTRUG00000021069	usb1	99	68.478	Takifugu_rubripes
ENSPMEG00000006402	usb1	99	59.058	ENSTNIG00000000626	usb1	98	58.993	Tetraodon_nigroviridis
ENSPMEG00000006402	usb1	81	37.778	ENSTBEG00000001507	USB1	97	37.778	Tupaia_belangeri
ENSPMEG00000006402	usb1	84	52.137	ENSUAMG00000016823	USB1	98	48.754	Ursus_americanus
ENSPMEG00000006402	usb1	77	53.488	ENSUMAG00000021369	USB1	100	53.488	Ursus_maritimus
ENSPMEG00000006402	usb1	99	46.909	ENSVVUG00000023700	USB1	87	51.982	Vulpes_vulpes
ENSPMEG00000006402	usb1	76	55.399	ENSXETG00000013795	usb1	96	52.209	Xenopus_tropicalis
ENSPMEG00000006402	usb1	94	96.154	ENSXMAG00000024687	usb1	81	95.971	Xiphophorus_maculatus