EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000006463 (Gene tree)
Gene ID: 106903282
Gene Symbol: polr1a
Alias: -
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 28016 bases
Position: chrKQ552758.1:191098-219113
Accession: 106903282
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000005066	RNA_pol_Rpb1_5	PF04998.17	2.7e-94	1	1
ENSPMEP00000005066	RNA_pol_Rpb1_4	PF05000.17	3.4e-21	1	1
ENSPMEP00000005066	RNA_pol_Rpb1_2	PF00623.20	3e-68	1	1
ENSPMEP00000005066	RNA_pol_Rpb1_3	PF04983.18	4.6e-36	1	1
ENSPMEP00000005066	RNA_pol_Rpb1_1	PF04997.12	9.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000008131	-	5010	XM_014966977	ENSPMEP00000005066	1669 (aa)	XP_014822463	-

Gene Model

Click here to download ENSPMEG00000006463's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000006463's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000006463	polr1a	70	34.286	ENSPMEG00000002071	polr2a	60	34.286
ENSPMEG00000006463	polr1a	63	32.394	ENSPMEG00000006821	polr3a	69	32.394

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000006463	polr1a	100	64.157	ENSG00000068654	POLR1A	100	63.905	Homo_sapiens
ENSPMEG00000006463	polr1a	69	80.948	ENSAPOG00000017945	polr1a	99	80.678	Acanthochromis_polyacanthus
ENSPMEG00000006463	polr1a	100	63.185	ENSAMEG00000005807	POLR1A	100	66.018	Ailuropoda_melanoleuca
ENSPMEG00000006463	polr1a	100	78.336	ENSACIG00000022147	polr1a	100	77.591	Amphilophus_citrinellus
ENSPMEG00000006463	polr1a	100	80.585	ENSAOCG00000017336	polr1a	100	80.211	Amphiprion_ocellaris
ENSPMEG00000006463	polr1a	100	80.526	ENSAPEG00000016105	polr1a	100	80.152	Amphiprion_percula
ENSPMEG00000006463	polr1a	100	80.364	ENSATEG00000016773	polr1a	100	80.259	Anabas_testudineus
ENSPMEG00000006463	polr1a	86	66.141	ENSAPLG00000013871	POLR1A	97	66.597	Anas_platyrhynchos
ENSPMEG00000006463	polr1a	99	63.146	ENSACAG00000012141	POLR1A	99	62.514	Anolis_carolinensis
ENSPMEG00000006463	polr1a	100	63.731	ENSANAG00000033927	POLR1A	100	63.478	Aotus_nancymaae
ENSPMEG00000006463	polr1a	100	75.147	ENSACLG00000020541	polr1a	100	74.617	Astatotilapia_calliptera
ENSPMEG00000006463	polr1a	100	63.225	ENSBTAG00000006481	POLR1A	100	63.088	Bos_taurus
ENSPMEG00000006463	polr1a	97	41.189	WBGene00012999	rpoa-1	77	58.696	Caenorhabditis_elegans
ENSPMEG00000006463	polr1a	100	63.752	ENSCJAG00000019547	POLR1A	100	63.441	Callithrix_jacchus
ENSPMEG00000006463	polr1a	100	63.012	ENSCAFG00000007613	POLR1A	100	63.204	Canis_familiaris
ENSPMEG00000006463	polr1a	100	63.406	ENSCAFG00020014752	POLR1A	100	63.208	Canis_lupus_dingo
ENSPMEG00000006463	polr1a	100	62.514	ENSCHIG00000018204	POLR1A	100	62.297	Capra_hircus
ENSPMEG00000006463	polr1a	100	63.557	ENSTSYG00000002761	POLR1A	100	63.378	Carlito_syrichta
ENSPMEG00000006463	polr1a	97	60.706	ENSCAPG00000010132	POLR1A	99	61.034	Cavia_aperea
ENSPMEG00000006463	polr1a	100	63.094	ENSCPOG00000012350	POLR1A	100	63.146	Cavia_porcellus
ENSPMEG00000006463	polr1a	100	63.984	ENSCCAG00000019839	POLR1A	100	63.673	Cebus_capucinus
ENSPMEG00000006463	polr1a	100	64.157	ENSCATG00000029786	POLR1A	100	63.847	Cercocebus_atys
ENSPMEG00000006463	polr1a	100	62.695	ENSCLAG00000005187	POLR1A	100	62.609	Chinchilla_lanigera
ENSPMEG00000006463	polr1a	100	64.100	ENSCSAG00000016251	POLR1A	100	63.789	Chlorocebus_sabaeus
ENSPMEG00000006463	polr1a	99	64.423	ENSCPBG00000001115	POLR1A	99	63.842	Chrysemys_picta_bellii
ENSPMEG00000006463	polr1a	99	46.735	ENSCSAVG00000007184	-	97	51.795	Ciona_savignyi
ENSPMEG00000006463	polr1a	100	61.516	ENSCANG00000031785	POLR1A	100	61.089	Colobus_angolensis_palliatus
ENSPMEG00000006463	polr1a	100	58.333	ENSCGRG00001006651	Polr1a	100	58.664	Cricetulus_griseus_chok1gshd
ENSPMEG00000006463	polr1a	61	63.250	ENSCGRG00000010834	Polr1a	100	62.224	Cricetulus_griseus_crigri
ENSPMEG00000006463	polr1a	100	74.024	ENSCSEG00000020190	polr1a	100	73.690	Cynoglossus_semilaevis
ENSPMEG00000006463	polr1a	100	81.462	ENSCVAG00000020941	polr1a	100	81.148	Cyprinodon_variegatus
ENSPMEG00000006463	polr1a	100	70.457	ENSDARG00000098375	polr1a	100	69.560	Danio_rerio
ENSPMEG00000006463	polr1a	100	60.243	ENSDNOG00000010829	POLR1A	100	60.035	Dasypus_novemcinctus
ENSPMEG00000006463	polr1a	100	62.816	ENSDORG00000008298	Polr1a	100	63.326	Dipodomys_ordii
ENSPMEG00000006463	polr1a	91	47.619	FBgn0019938	RpI1	99	41.608	Drosophila_melanogaster
ENSPMEG00000006463	polr1a	71	87.500	ENSETEG00000000412	-	71	87.500	Echinops_telfairi
ENSPMEG00000006463	polr1a	89	47.206	ENSEBUG00000005667	-	99	46.693	Eptatretus_burgeri
ENSPMEG00000006463	polr1a	100	62.644	ENSEASG00005001625	POLR1A	100	63.210	Equus_asinus_asinus
ENSPMEG00000006463	polr1a	100	62.701	ENSECAG00000036306	-	99	66.840	Equus_caballus
ENSPMEG00000006463	polr1a	100	62.701	ENSECAG00000010092	POLR1A	99	66.840	Equus_caballus
ENSPMEG00000006463	polr1a	100	62.701	ENSECAG00000030510	-	99	66.840	Equus_caballus
ENSPMEG00000006463	polr1a	84	75.745	ENSEEUG00000000676	POLR1A	82	75.951	Erinaceus_europaeus
ENSPMEG00000006463	polr1a	100	70.797	ENSELUG00000012769	polr1a	99	70.739	Esox_lucius
ENSPMEG00000006463	polr1a	100	62.543	ENSFCAG00000008966	POLR1A	100	62.993	Felis_catus
ENSPMEG00000006463	polr1a	99	63.460	ENSFALG00000010082	POLR1A	99	62.675	Ficedula_albicollis
ENSPMEG00000006463	polr1a	100	62.493	ENSFDAG00000013726	POLR1A	100	62.849	Fukomys_damarensis
ENSPMEG00000006463	polr1a	100	81.202	ENSFHEG00000005996	polr1a	100	81.012	Fundulus_heteroclitus
ENSPMEG00000006463	polr1a	100	67.761	ENSGMOG00000002230	polr1a	100	67.425	Gadus_morhua
ENSPMEG00000006463	polr1a	89	61.772	ENSGALG00000038160	-	98	61.324	Gallus_gallus
ENSPMEG00000006463	polr1a	100	88.052	ENSGAFG00000015266	polr1a	100	88.052	Gambusia_affinis
ENSPMEG00000006463	polr1a	100	74.236	ENSGACG00000018791	polr1a	100	73.660	Gasterosteus_aculeatus
ENSPMEG00000006463	polr1a	89	65.705	ENSGAGG00000004984	-	99	65.206	Gopherus_agassizii
ENSPMEG00000006463	polr1a	100	64.100	ENSGGOG00000001788	POLR1A	100	63.847	Gorilla_gorilla
ENSPMEG00000006463	polr1a	90	77.704	ENSHBUG00000020021	polr1a	96	85.463	Haplochromis_burtoni
ENSPMEG00000006463	polr1a	100	63.051	ENSHGLG00000006334	POLR1A	100	62.870	Heterocephalus_glaber_female
ENSPMEG00000006463	polr1a	100	62.869	ENSHGLG00100006614	POLR1A	100	62.688	Heterocephalus_glaber_male
ENSPMEG00000006463	polr1a	100	74.719	ENSHCOG00000003345	polr1a	100	74.408	Hippocampus_comes
ENSPMEG00000006463	polr1a	100	68.433	ENSIPUG00000013174	polr1a	100	67.755	Ictalurus_punctatus
ENSPMEG00000006463	polr1a	100	63.393	ENSSTOG00000012580	POLR1A	100	63.103	Ictidomys_tridecemlineatus
ENSPMEG00000006463	polr1a	100	62.927	ENSJJAG00000013113	Polr1a	100	62.703	Jaculus_jaculus
ENSPMEG00000006463	polr1a	100	81.636	ENSKMAG00000007399	polr1a	100	81.107	Kryptolebias_marmoratus
ENSPMEG00000006463	polr1a	100	77.592	ENSLBEG00000015401	polr1a	100	76.900	Labrus_bergylta
ENSPMEG00000006463	polr1a	52	66.703	ENSLACG00000003218	polr1a	100	66.231	Latimeria_chalumnae
ENSPMEG00000006463	polr1a	100	68.369	ENSLOCG00000010881	polr1a	100	67.533	Lepisosteus_oculatus
ENSPMEG00000006463	polr1a	100	62.826	ENSLAFG00000014948	POLR1A	100	62.862	Loxodonta_africana
ENSPMEG00000006463	polr1a	100	63.694	ENSMFAG00000046097	POLR1A	100	63.847	Macaca_fascicularis
ENSPMEG00000006463	polr1a	100	63.636	ENSMMUG00000015815	POLR1A	100	63.789	Macaca_mulatta
ENSPMEG00000006463	polr1a	100	63.636	ENSMNEG00000043313	POLR1A	100	63.789	Macaca_nemestrina
ENSPMEG00000006463	polr1a	100	63.678	ENSMLEG00000042428	POLR1A	100	63.368	Mandrillus_leucophaeus
ENSPMEG00000006463	polr1a	100	79.858	ENSMAMG00000016565	polr1a	100	79.314	Mastacembelus_armatus
ENSPMEG00000006463	polr1a	100	79.695	ENSMZEG00005004915	polr1a	100	78.978	Maylandia_zebra
ENSPMEG00000006463	polr1a	99	60.960	ENSMGAG00000013111	POLR1A	99	60.731	Meleagris_gallopavo
ENSPMEG00000006463	polr1a	91	62.998	ENSMAUG00000008497	Polr1a	99	62.429	Mesocricetus_auratus
ENSPMEG00000006463	polr1a	100	63.331	ENSMICG00000000757	POLR1A	100	63.289	Microcebus_murinus
ENSPMEG00000006463	polr1a	100	63.478	ENSMOCG00000000122	Polr1a	100	63.188	Microtus_ochrogaster
ENSPMEG00000006463	polr1a	100	75.763	ENSMMOG00000010216	polr1a	100	75.308	Mola_mola
ENSPMEG00000006463	polr1a	100	59.681	ENSMODG00000009335	POLR1A	80	64.023	Monodelphis_domestica
ENSPMEG00000006463	polr1a	100	78.638	ENSMALG00000013363	polr1a	100	77.641	Monopterus_albus
ENSPMEG00000006463	polr1a	100	62.688	MGP_CAROLIEiJ_G0028494	Polr1a	100	62.167	Mus_caroli
ENSPMEG00000006463	polr1a	100	62.920	ENSMUSG00000049553	Polr1a	100	62.399	Mus_musculus
ENSPMEG00000006463	polr1a	100	62.514	MGP_PahariEiJ_G0022230	Polr1a	100	62.109	Mus_pahari
ENSPMEG00000006463	polr1a	100	61.652	MGP_SPRETEiJ_G0029499	Polr1a	100	61.652	Mus_spretus
ENSPMEG00000006463	polr1a	100	63.710	ENSMPUG00000009135	POLR1A	100	63.457	Mustela_putorius_furo
ENSPMEG00000006463	polr1a	100	63.020	ENSMLUG00000015723	POLR1A	100	63.762	Myotis_lucifugus
ENSPMEG00000006463	polr1a	100	63.405	ENSNGAG00000017907	Polr1a	100	62.826	Nannospalax_galili
ENSPMEG00000006463	polr1a	100	79.189	ENSNBRG00000000519	polr1a	100	78.802	Neolamprologus_brichardi
ENSPMEG00000006463	polr1a	100	62.248	ENSNLEG00000002264	POLR1A	100	61.995	Nomascus_leucogenys
ENSPMEG00000006463	polr1a	75	82.677	ENSMEUG00000011665	-	75	82.677	Notamacropus_eugenii
ENSPMEG00000006463	polr1a	99	57.510	ENSOPRG00000008269	POLR1A	100	58.053	Ochotona_princeps
ENSPMEG00000006463	polr1a	100	62.999	ENSODEG00000003542	POLR1A	100	62.870	Octodon_degus
ENSPMEG00000006463	polr1a	100	78.825	ENSONIG00000015895	polr1a	100	77.739	Oreochromis_niloticus
ENSPMEG00000006463	polr1a	100	63.573	ENSOCUG00000010138	POLR1A	100	63.436	Oryctolagus_cuniculus
ENSPMEG00000006463	polr1a	100	78.325	ENSORLG00000008753	polr1a	99	77.693	Oryzias_latipes
ENSPMEG00000006463	polr1a	100	76.613	ENSORLG00020020726	polr1a	99	76.331	Oryzias_latipes_hni
ENSPMEG00000006463	polr1a	95	86.170	ENSORLG00015016071	polr1a	98	86.170	Oryzias_latipes_hsok
ENSPMEG00000006463	polr1a	100	62.601	ENSOGAG00000004031	POLR1A	100	62.688	Otolemur_garnettii
ENSPMEG00000006463	polr1a	100	62.565	ENSOARG00000020601	POLR1A	100	63.021	Ovis_aries
ENSPMEG00000006463	polr1a	100	63.926	ENSPPAG00000042450	POLR1A	100	63.673	Pan_paniscus
ENSPMEG00000006463	polr1a	100	62.486	ENSPPRG00000006702	POLR1A	100	62.993	Panthera_pardus
ENSPMEG00000006463	polr1a	100	62.099	ENSPTIG00000018783	POLR1A	100	62.601	Panthera_tigris_altaica
ENSPMEG00000006463	polr1a	100	63.405	ENSPTRG00000012147	POLR1A	100	63.615	Pan_troglodytes
ENSPMEG00000006463	polr1a	100	63.926	ENSPANG00000025908	POLR1A	100	63.615	Papio_anubis
ENSPMEG00000006463	polr1a	100	68.706	ENSPKIG00000005468	polr1a	96	72.917	Paramormyrops_kingsleyae
ENSPMEG00000006463	polr1a	64	63.472	ENSPSIG00000009321	-	99	64.161	Pelodiscus_sinensis
ENSPMEG00000006463	polr1a	54	76.170	ENSPMGG00000009718	polr1a	95	75.490	Periophthalmus_magnuspinnatus
ENSPMEG00000006463	polr1a	100	63.094	ENSPEMG00000022224	Polr1a	100	62.630	Peromyscus_maniculatus_bairdii
ENSPMEG00000006463	polr1a	95	61.007	ENSPCIG00000004222	POLR1A	99	60.888	Phascolarctos_cinereus
ENSPMEG00000006463	polr1a	100	95.532	ENSPFOG00000005025	polr1a	100	95.532	Poecilia_formosa
ENSPMEG00000006463	polr1a	100	94.412	ENSPLAG00000021389	polr1a	100	94.052	Poecilia_latipinna
ENSPMEG00000006463	polr1a	100	93.537	ENSPREG00000002389	polr1a	100	93.235	Poecilia_reticulata
ENSPMEG00000006463	polr1a	100	64.042	ENSPPYG00000012217	POLR1A	100	63.968	Pongo_abelii
ENSPMEG00000006463	polr1a	91	63.297	ENSPCAG00000011582	POLR1A	91	62.053	Procavia_capensis
ENSPMEG00000006463	polr1a	100	62.493	ENSPCOG00000026987	POLR1A	100	62.999	Propithecus_coquereli
ENSPMEG00000006463	polr1a	94	64.265	ENSPVAG00000012674	POLR1A	92	64.191	Pteropus_vampyrus
ENSPMEG00000006463	polr1a	100	79.695	ENSPNYG00000000026	polr1a	100	78.920	Pundamilia_nyererei
ENSPMEG00000006463	polr1a	100	69.535	ENSPNAG00000019223	polr1a	100	69.231	Pygocentrus_nattereri
ENSPMEG00000006463	polr1a	100	62.804	ENSRNOG00000009545	Polr1a	100	62.399	Rattus_norvegicus
ENSPMEG00000006463	polr1a	100	63.810	ENSRBIG00000028335	POLR1A	100	63.789	Rhinopithecus_bieti
ENSPMEG00000006463	polr1a	100	63.810	ENSRROG00000031473	POLR1A	100	63.789	Rhinopithecus_roxellana
ENSPMEG00000006463	polr1a	98	38.592	YOR341W	RPA190	94	38.462	Saccharomyces_cerevisiae
ENSPMEG00000006463	polr1a	100	63.868	ENSSBOG00000030262	POLR1A	100	63.731	Saimiri_boliviensis_boliviensis
ENSPMEG00000006463	polr1a	100	58.007	ENSSHAG00000014739	POLR1A	100	57.184	Sarcophilus_harrisii
ENSPMEG00000006463	polr1a	100	67.564	ENSSFOG00015019716	polr1a	100	67.734	Scleropages_formosus
ENSPMEG00000006463	polr1a	100	78.904	ENSSMAG00000014342	polr1a	100	78.361	Scophthalmus_maximus
ENSPMEG00000006463	polr1a	100	80.445	ENSSDUG00000014631	polr1a	100	79.789	Seriola_dumerili
ENSPMEG00000006463	polr1a	100	79.243	ENSSLDG00000024095	polr1a	100	78.770	Seriola_lalandi_dorsalis
ENSPMEG00000006463	polr1a	67	95.122	ENSSARG00000003136	-	71	95.122	Sorex_araneus
ENSPMEG00000006463	polr1a	100	62.566	ENSSPUG00000004215	POLR1A	98	71.282	Sphenodon_punctatus
ENSPMEG00000006463	polr1a	69	77.155	ENSSPAG00000016341	polr1a	99	76.644	Stegastes_partitus
ENSPMEG00000006463	polr1a	83	64.067	ENSSSCG00000008226	POLR1A	99	63.782	Sus_scrofa
ENSPMEG00000006463	polr1a	99	62.588	ENSTGUG00000010704	POLR1A	100	62.426	Taeniopygia_guttata
ENSPMEG00000006463	polr1a	100	74.618	ENSTRUG00000002210	polr1a	99	74.266	Takifugu_rubripes
ENSPMEG00000006463	polr1a	100	68.479	ENSTNIG00000010116	polr1a	100	68.074	Tetraodon_nigroviridis
ENSPMEG00000006463	polr1a	72	80.531	ENSTBEG00000008646	POLR1A	70	80.531	Tupaia_belangeri
ENSPMEG00000006463	polr1a	100	60.289	ENSTTRG00000008597	POLR1A	100	60.615	Tursiops_truncatus
ENSPMEG00000006463	polr1a	70	64.657	ENSUAMG00000012158	-	94	65.372	Ursus_americanus
ENSPMEG00000006463	polr1a	100	63.432	ENSUMAG00000006700	POLR1A	100	63.432	Ursus_maritimus
ENSPMEG00000006463	polr1a	100	63.167	ENSVVUG00000001245	POLR1A	100	63.146	Vulpes_vulpes
ENSPMEG00000006463	polr1a	100	60.694	ENSXETG00000001952	polr1a	99	61.158	Xenopus_tropicalis
ENSPMEG00000006463	polr1a	100	90.211	ENSXMAG00000004032	polr1a	100	89.671	Xiphophorus_maculatus