EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000006653 (Gene tree)
Gene ID: 106917788
Gene Symbol: -
Alias: -
Full Name: poly(rC)-binding protein 3
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 19285 bases
Position: chrKQ551251.1:333864-353148
Accession: 106917788
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000024020	KH_1	PF00013.29	1.1e-50	1	3
ENSPMEP00000024020	KH_1	PF00013.29	1.1e-50	2	3
ENSPMEP00000024020	KH_1	PF00013.29	1.1e-50	3	3
ENSPMEP00000024132	KH_1	PF00013.29	1.3e-50	1	3
ENSPMEP00000024132	KH_1	PF00013.29	1.3e-50	2	3
ENSPMEP00000024132	KH_1	PF00013.29	1.3e-50	3	3
ENSPMEP00000024111	KH_1	PF00013.29	1.3e-50	1	3
ENSPMEP00000024111	KH_1	PF00013.29	1.3e-50	2	3
ENSPMEP00000024111	KH_1	PF00013.29	1.3e-50	3	3
ENSPMEP00000004735	KH_1	PF00013.29	1.3e-50	1	3
ENSPMEP00000004735	KH_1	PF00013.29	1.3e-50	2	3
ENSPMEP00000004735	KH_1	PF00013.29	1.3e-50	3	3
ENSPMEP00000004795	KH_1	PF00013.29	2.7e-44	1	2
ENSPMEP00000004795	KH_1	PF00013.29	2.7e-44	2	2
ENSPMEP00000024111	KH_2	PF07650.17	5.8e-12	1	1
ENSPMEP00000024132	KH_2	PF07650.17	6.1e-12	1	1
ENSPMEP00000024020	KH_2	PF07650.17	7.9e-12	1	1
ENSPMEP00000004735	KH_2	PF07650.17	1.2e-11	1	1
ENSPMEP00000004795	KH_2	PF07650.17	7.6e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000008570	-	885	-	ENSPMEP00000004795	294 (aa)	-	-
ENSPMET00000008470	-	999	-	ENSPMEP00000024111	332 (aa)	-	-
ENSPMET00000008675	-	999	XM_014987019	ENSPMEP00000004735	332 (aa)	XP_014842505	-
ENSPMET00000008404	-	1011	XM_014987022	ENSPMEP00000024132	336 (aa)	XP_014842508	-
ENSPMET00000008704	-	975	-	ENSPMEP00000024020	324 (aa)	-	-

Gene Model

Click here to download ENSPMEG00000006653's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000006653's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000006653	-	71	42.614	ENSPMEG00000012990	pcbp4	60	41.053
ENSPMEG00000006653	-	98	70.725	ENSPMEG00000007633	PCBP2	96	73.750
ENSPMEG00000006653	-	86	51.250	ENSPMEG00000010297	hnrpkl	51	52.055
ENSPMEG00000006653	-	82	38.095	ENSPMEG00000014049	khsrp	55	38.095
ENSPMEG00000006653	-	90	39.062	ENSPMEG00000016672	FUBP3	73	39.062
ENSPMEG00000006653	-	92	35.000	ENSPMEG00000001726	igf2bp2b	62	34.247
ENSPMEG00000006653	-	99	66.272	ENSPMEG00000012762	zgc:110045	97	66.272
ENSPMEG00000006653	-	97	33.858	ENSPMEG00000007820	igf2bp3	62	33.858
ENSPMEG00000006653	-	91	39.437	ENSPMEG00000019140	-	51	39.437
ENSPMEG00000006653	-	76	52.857	ENSPMEG00000006779	hnrnpk	53	52.055
ENSPMEG00000006653	-	100	87.288	ENSPMEG00000021239	pcbp3	100	87.288
ENSPMEG00000006653	-	88	40.000	ENSPMEG00000016376	nova1	51	40.845
ENSPMEG00000006653	-	90	41.270	ENSPMEG00000014351	-	71	37.209
ENSPMEG00000006653	-	87	35.065	ENSPMEG00000004747	fubp1	54	37.333
ENSPMEG00000006653	-	98	73.171	ENSPMEG00000021528	pcbp2	98	72.897

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000006653	-	99	91.496	ENSAPOG00000016582	-	99	91.496	Acanthochromis_polyacanthus
ENSPMEG00000006653	-	98	88.520	ENSAPOG00000020003	pcbp3	87	90.000	Acanthochromis_polyacanthus
ENSPMEG00000006653	-	100	87.464	ENSAMEG00000001697	-	100	82.466	Ailuropoda_melanoleuca
ENSPMEG00000006653	-	100	90.029	ENSACIG00000010933	pcbp3	100	90.323	Amphilophus_citrinellus
ENSPMEG00000006653	-	99	92.059	ENSACIG00000002739	-	99	92.059	Amphilophus_citrinellus
ENSPMEG00000006653	-	91	93.115	ENSAOCG00000007806	-	100	93.115	Amphiprion_ocellaris
ENSPMEG00000006653	-	96	87.915	ENSAOCG00000008592	-	100	85.758	Amphiprion_ocellaris
ENSPMEG00000006653	-	100	88.068	ENSAPEG00000008011	pcbp3	100	88.068	Amphiprion_percula
ENSPMEG00000006653	-	99	89.766	ENSAPEG00000005209	-	99	89.766	Amphiprion_percula
ENSPMEG00000006653	-	99	90.828	ENSATEG00000009833	-	99	90.828	Anabas_testudineus
ENSPMEG00000006653	-	95	90.154	ENSATEG00000015787	-	100	90.154	Anabas_testudineus
ENSPMEG00000006653	-	100	87.283	ENSAPLG00000002975	-	100	86.994	Anas_platyrhynchos
ENSPMEG00000006653	-	98	72.480	ENSAPLG00000008951	-	82	72.480	Anas_platyrhynchos
ENSPMEG00000006653	-	100	85.124	ENSACAG00000004607	-	100	84.848	Anolis_carolinensis
ENSPMEG00000006653	-	98	80.229	ENSACAG00000009819	-	98	80.229	Anolis_carolinensis
ENSPMEG00000006653	-	93	77.695	ENSANAG00000030702	-	100	87.452	Aotus_nancymaae
ENSPMEG00000006653	-	99	91.045	ENSACLG00000003801	-	99	91.045	Astatotilapia_calliptera
ENSPMEG00000006653	-	100	87.216	ENSACLG00000011835	pcbp3	100	87.216	Astatotilapia_calliptera
ENSPMEG00000006653	-	100	89.714	ENSAMXG00000003440	pcbp3	100	89.714	Astyanax_mexicanus
ENSPMEG00000006653	-	93	70.405	ENSAMXG00000001760	zgc:110045	72	70.405	Astyanax_mexicanus
ENSPMEG00000006653	-	96	87.926	ENSAMXG00000013588	-	100	87.937	Astyanax_mexicanus
ENSPMEG00000006653	-	90	88.000	ENSCAFG00020019472	-	84	87.600	Canis_lupus_dingo
ENSPMEG00000006653	-	100	86.957	ENSCSAG00000007440	-	91	86.667	Chlorocebus_sabaeus
ENSPMEG00000006653	-	100	86.364	ENSCPBG00000012151	-	100	86.080	Chrysemys_picta_bellii
ENSPMEG00000006653	-	95	86.224	ENSCPBG00000000733	-	68	87.831	Chrysemys_picta_bellii
ENSPMEG00000006653	-	99	78.632	ENSCSEG00000016984	-	99	78.348	Cynoglossus_semilaevis
ENSPMEG00000006653	-	96	88.615	ENSCSEG00000000822	pcbp3	99	88.710	Cynoglossus_semilaevis
ENSPMEG00000006653	-	100	88.319	ENSCVAG00000014482	pcbp3	100	88.319	Cyprinodon_variegatus
ENSPMEG00000006653	-	100	89.706	ENSCVAG00000005262	-	100	89.706	Cyprinodon_variegatus
ENSPMEG00000006653	-	100	90.000	ENSDARG00000054378	pcbp3	100	90.000	Danio_rerio
ENSPMEG00000006653	-	100	76.522	ENSETEG00000015988	-	100	76.232	Echinops_telfairi
ENSPMEG00000006653	-	91	65.641	ENSEBUG00000005495	pcbp3	69	66.942	Eptatretus_burgeri
ENSPMEG00000006653	-	98	73.314	ENSEBUG00000007485	-	92	74.026	Eptatretus_burgeri
ENSPMEG00000006653	-	90	68.317	ENSEBUG00000016192	pcbp3	99	67.987	Eptatretus_burgeri
ENSPMEG00000006653	-	100	88.824	ENSELUG00000001560	-	98	88.081	Esox_lucius
ENSPMEG00000006653	-	100	88.102	ENSELUG00000003521	pcbp3	100	88.102	Esox_lucius
ENSPMEG00000006653	-	98	72.752	ENSFALG00000004411	-	77	72.752	Ficedula_albicollis
ENSPMEG00000006653	-	100	86.919	ENSFALG00000003949	-	100	86.628	Ficedula_albicollis
ENSPMEG00000006653	-	99	90.058	ENSFHEG00000006539	-	99	90.058	Fundulus_heteroclitus
ENSPMEG00000006653	-	97	90.154	ENSFHEG00000016615	pcbp3	95	90.154	Fundulus_heteroclitus
ENSPMEG00000006653	-	95	78.378	ENSGMOG00000008611	-	91	78.378	Gadus_morhua
ENSPMEG00000006653	-	96	77.485	ENSGMOG00000011992	pcbp3	96	77.485	Gadus_morhua
ENSPMEG00000006653	-	97	81.065	ENSGALG00000013155	-	98	83.333	Gallus_gallus
ENSPMEG00000006653	-	100	85.556	ENSGALG00000004394	-	100	85.278	Gallus_gallus
ENSPMEG00000006653	-	95	87.273	ENSGAFG00000011430	pcbp3	96	87.273	Gambusia_affinis
ENSPMEG00000006653	-	100	90.000	ENSGAFG00000010274	-	100	90.000	Gambusia_affinis
ENSPMEG00000006653	-	99	79.666	ENSGACG00000014955	-	99	79.666	Gasterosteus_aculeatus
ENSPMEG00000006653	-	99	88.319	ENSGACG00000002266	-	99	88.034	Gasterosteus_aculeatus
ENSPMEG00000006653	-	90	79.279	ENSGAGG00000006956	-	93	82.511	Gopherus_agassizii
ENSPMEG00000006653	-	87	82.131	ENSGAGG00000000271	-	100	81.949	Gopherus_agassizii
ENSPMEG00000006653	-	99	91.045	ENSHBUG00000021782	-	99	91.045	Haplochromis_burtoni
ENSPMEG00000006653	-	100	87.749	ENSHBUG00000010697	pcbp3	100	87.749	Haplochromis_burtoni
ENSPMEG00000006653	-	99	86.136	ENSHCOG00000006067	-	97	87.346	Hippocampus_comes
ENSPMEG00000006653	-	100	88.571	ENSHCOG00000017868	pcbp3	100	88.571	Hippocampus_comes
ENSPMEG00000006653	-	99	91.071	ENSIPUG00000006238	pcbp3	99	91.071	Ictalurus_punctatus
ENSPMEG00000006653	-	99	89.911	ENSKMAG00000018530	-	96	93.631	Kryptolebias_marmoratus
ENSPMEG00000006653	-	100	88.068	ENSKMAG00000003046	pcbp3	100	88.068	Kryptolebias_marmoratus
ENSPMEG00000006653	-	100	86.239	ENSLBEG00000006201	pcbp3	99	86.239	Labrus_bergylta
ENSPMEG00000006653	-	99	83.284	ENSLBEG00000006542	-	100	82.891	Labrus_bergylta
ENSPMEG00000006653	-	99	72.358	ENSLACG00000010804	zgc:110045	77	72.358	Latimeria_chalumnae
ENSPMEG00000006653	-	94	94.737	ENSLACG00000010386	pcbp3	74	81.197	Latimeria_chalumnae
ENSPMEG00000006653	-	95	79.646	ENSLOCG00000005058	zgc:110045	80	80.982	Lepisosteus_oculatus
ENSPMEG00000006653	-	100	86.236	ENSLOCG00000009369	pcbp3	100	85.955	Lepisosteus_oculatus
ENSPMEG00000006653	-	99	89.645	ENSMAMG00000011620	-	99	89.645	Mastacembelus_armatus
ENSPMEG00000006653	-	97	89.846	ENSMAMG00000022336	pcbp3	93	89.846	Mastacembelus_armatus
ENSPMEG00000006653	-	100	87.714	ENSMZEG00005008993	pcbp3	100	87.714	Maylandia_zebra
ENSPMEG00000006653	-	100	92.515	ENSMZEG00005014882	-	100	92.515	Maylandia_zebra
ENSPMEG00000006653	-	96	74.526	ENSMGAG00000006794	-	75	74.526	Meleagris_gallopavo
ENSPMEG00000006653	-	94	98.667	ENSMGAG00000001883	-	97	77.493	Meleagris_gallopavo
ENSPMEG00000006653	-	96	86.145	ENSMMOG00000000730	pcbp3	88	85.231	Mola_mola
ENSPMEG00000006653	-	99	90.746	ENSMMOG00000005216	-	99	90.746	Mola_mola
ENSPMEG00000006653	-	75	80.841	ENSMODG00000027884	-	93	80.374	Monodelphis_domestica
ENSPMEG00000006653	-	100	90.087	ENSMALG00000000691	pcbp3	100	90.087	Monopterus_albus
ENSPMEG00000006653	-	100	83.143	ENSMPUG00000001779	-	92	82.857	Mustela_putorius_furo
ENSPMEG00000006653	-	100	92.169	ENSNBRG00000016714	-	100	92.169	Neolamprologus_brichardi
ENSPMEG00000006653	-	100	90.323	ENSNBRG00000016409	-	100	90.323	Neolamprologus_brichardi
ENSPMEG00000006653	-	96	84.638	ENSOPRG00000003431	-	99	85.251	Ochotona_princeps
ENSPMEG00000006653	-	96	85.143	ENSONIG00000012122	-	98	82.955	Oreochromis_niloticus
ENSPMEG00000006653	-	100	97.701	ENSONIG00000004611	-	99	88.630	Oreochromis_niloticus
ENSPMEG00000006653	-	100	86.919	ENSOCUG00000002696	-	91	86.628	Oryctolagus_cuniculus
ENSPMEG00000006653	-	96	87.915	ENSORLG00000000059	pcbp3	100	87.307	Oryzias_latipes
ENSPMEG00000006653	-	99	89.244	ENSORLG00000022739	-	99	89.244	Oryzias_latipes
ENSPMEG00000006653	-	99	91.071	ENSORLG00020006124	-	99	91.071	Oryzias_latipes_hni
ENSPMEG00000006653	-	99	86.765	ENSORLG00020012671	pcbp3	99	86.957	Oryzias_latipes_hni
ENSPMEG00000006653	-	99	89.086	ENSORLG00015008051	-	99	89.086	Oryzias_latipes_hsok
ENSPMEG00000006653	-	99	86.765	ENSORLG00015000429	pcbp3	99	86.957	Oryzias_latipes_hsok
ENSPMEG00000006653	-	99	91.369	ENSOMEG00000020162	-	99	91.369	Oryzias_melastigma
ENSPMEG00000006653	-	93	87.821	ENSOMEG00000020811	pcbp3	98	88.055	Oryzias_melastigma
ENSPMEG00000006653	-	100	83.060	ENSOGAG00000008044	-	100	82.740	Otolemur_garnettii
ENSPMEG00000006653	-	90	78.534	ENSPKIG00000020913	-	83	86.559	Paramormyrops_kingsleyae
ENSPMEG00000006653	-	100	89.118	ENSPKIG00000019329	pcbp3	100	89.118	Paramormyrops_kingsleyae
ENSPMEG00000006653	-	100	78.063	ENSPSIG00000014970	-	100	78.348	Pelodiscus_sinensis
ENSPMEG00000006653	-	76	77.692	ENSPSIG00000008350	-	72	77.692	Pelodiscus_sinensis
ENSPMEG00000006653	-	100	88.000	ENSPMGG00000022383	pcbp3	100	88.000	Periophthalmus_magnuspinnatus
ENSPMEG00000006653	-	90	76.166	ENSPMAG00000004637	-	97	84.574	Petromyzon_marinus
ENSPMEG00000006653	-	98	67.257	ENSPMAG00000004551	pcbp3	91	66.962	Petromyzon_marinus
ENSPMEG00000006653	-	100	85.674	ENSPCIG00000028092	-	100	85.393	Phascolarctos_cinereus
ENSPMEG00000006653	-	97	86.087	ENSPLAG00000011449	pcbp3	100	78.005	Poecilia_latipinna
ENSPMEG00000006653	-	99	96.096	ENSPLAG00000004074	-	92	96.096	Poecilia_latipinna
ENSPMEG00000006653	-	99	91.667	ENSPREG00000020585	-	99	91.667	Poecilia_reticulata
ENSPMEG00000006653	-	96	88.000	ENSPREG00000015736	pcbp3	99	87.821	Poecilia_reticulata
ENSPMEG00000006653	-	99	91.045	ENSPNYG00000013205	-	99	91.045	Pundamilia_nyererei
ENSPMEG00000006653	-	96	87.613	ENSPNYG00000012326	pcbp3	96	87.421	Pundamilia_nyererei
ENSPMEG00000006653	-	99	89.213	ENSPNAG00000015104	pcbp3	99	89.213	Pygocentrus_nattereri
ENSPMEG00000006653	-	100	86.571	ENSPNAG00000008541	-	99	87.821	Pygocentrus_nattereri
ENSPMEG00000006653	-	100	86.957	ENSRNOG00000001245	Pcbp3	100	86.667	Rattus_norvegicus
ENSPMEG00000006653	-	100	78.431	ENSRBIG00000028177	-	100	76.738	Rhinopithecus_bieti
ENSPMEG00000006653	-	98	97.674	ENSSHAG00000007890	-	100	85.755	Sarcophilus_harrisii
ENSPMEG00000006653	-	98	77.679	ENSSFOG00015007118	-	93	79.936	Scleropages_formosus
ENSPMEG00000006653	-	100	89.118	ENSSFOG00015010205	pcbp3	100	89.759	Scleropages_formosus
ENSPMEG00000006653	-	100	87.966	ENSSFOG00015014706	pcbp3	100	87.966	Scleropages_formosus
ENSPMEG00000006653	-	100	89.118	ENSSMAG00000003135	-	100	89.118	Scophthalmus_maximus
ENSPMEG00000006653	-	96	90.093	ENSSMAG00000011929	pcbp3	98	89.711	Scophthalmus_maximus
ENSPMEG00000006653	-	96	88.889	ENSSDUG00000011608	pcbp3	99	89.877	Seriola_dumerili
ENSPMEG00000006653	-	100	93.175	ENSSDUG00000008502	-	100	93.175	Seriola_dumerili
ENSPMEG00000006653	-	96	88.889	ENSSLDG00000008518	pcbp3	99	89.877	Seriola_lalandi_dorsalis
ENSPMEG00000006653	-	100	90.000	ENSSLDG00000020161	-	100	90.000	Seriola_lalandi_dorsalis
ENSPMEG00000006653	-	94	86.842	ENSSPUG00000013214	-	84	89.560	Sphenodon_punctatus
ENSPMEG00000006653	-	91	93.443	ENSSPAG00000004190	-	100	93.443	Stegastes_partitus
ENSPMEG00000006653	-	100	78.779	ENSSPAG00000023341	-	100	79.070	Stegastes_partitus
ENSPMEG00000006653	-	100	83.807	ENSTGUG00000003316	-	100	83.523	Taeniopygia_guttata
ENSPMEG00000006653	-	98	81.121	ENSTGUG00000008158	-	99	80.826	Taeniopygia_guttata
ENSPMEG00000006653	-	100	85.546	ENSTRUG00000006280	-	100	85.251	Takifugu_rubripes
ENSPMEG00000006653	-	100	89.086	ENSTRUG00000013604	pcbp3	100	89.086	Takifugu_rubripes
ENSPMEG00000006653	-	100	84.254	ENSTTRG00000015075	-	100	84.254	Tursiops_truncatus
ENSPMEG00000006653	-	93	73.761	ENSXETG00000010491	pcbp2	75	73.761	Xenopus_tropicalis
ENSPMEG00000006653	-	98	84.527	ENSXETG00000011483	pcbp1	99	84.241	Xenopus_tropicalis
ENSPMEG00000006653	-	100	87.288	ENSXCOG00000020481	pcbp3	100	87.288	Xiphophorus_couchianus
ENSPMEG00000006653	-	100	88.068	ENSXMAG00000008175	pcbp3	100	88.068	Xiphophorus_maculatus
ENSPMEG00000006653	-	99	95.588	ENSXMAG00000028711	-	99	95.588	Xiphophorus_maculatus