EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000006745 (Gene tree)
Gene ID: 106915778
Gene Symbol: srl
Alias: -
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 18197 bases
Position: chrKQ551157.1:457147-475343
Accession: 106915778
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000024444	MMR_HSR1	PF01926.23	1.8e-08	1	1
ENSPMEP00000005373	MMR_HSR1	PF01926.23	2.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000007625	-	1386	-	ENSPMEP00000024444	461 (aa)	-	-
ENSPMET00000007607	-	4317	XM_014983613	ENSPMEP00000005373	493 (aa)	XP_014839099	-

Gene Model

Click here to download ENSPMEG00000006745's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000006745's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000006745	srl	85	32.911	ENSPMEG00000017519	ehd4	70	32.911
ENSPMEG00000006745	srl	87	31.841	ENSPMEG00000024037	-	71	31.841
ENSPMEG00000006745	srl	88	32.099	ENSPMEG00000003397	ehd1a	73	32.099
ENSPMEG00000006745	srl	89	33.981	ENSPMEG00000008030	ehd2b	74	33.981
ENSPMEG00000006745	srl	98	75.536	ENSPMEG00000005890	SRL	61	75.378
ENSPMEG00000006745	srl	81	33.512	ENSPMEG00000006514	ehd3	69	33.766

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000006745	srl	98	81.099	ENSG00000185739	SRL	99	83.023	Homo_sapiens
ENSPMEG00000006745	srl	100	93.709	ENSAPOG00000018093	srl	100	95.117	Acanthochromis_polyacanthus
ENSPMEG00000006745	srl	96	77.828	ENSAPOG00000012432	SRL	99	77.652	Acanthochromis_polyacanthus
ENSPMEG00000006745	srl	99	80.828	ENSAMEG00000010862	SRL	52	80.828	Ailuropoda_melanoleuca
ENSPMEG00000006745	srl	98	95.122	ENSACIG00000015799	srl	100	95.122	Amphilophus_citrinellus
ENSPMEG00000006745	srl	97	76.116	ENSACIG00000015419	SRL	99	76.116	Amphilophus_citrinellus
ENSPMEG00000006745	srl	94	96.083	ENSAOCG00000007574	srl	100	96.083	Amphiprion_ocellaris
ENSPMEG00000006745	srl	96	77.928	ENSAOCG00000017049	SRL	97	78.153	Amphiprion_ocellaris
ENSPMEG00000006745	srl	96	74.718	ENSAPEG00000006533	SRL	96	75.225	Amphiprion_percula
ENSPMEG00000006745	srl	100	93.926	ENSAPEG00000006911	srl	100	95.329	Amphiprion_percula
ENSPMEG00000006745	srl	96	77.412	ENSATEG00000009643	SRL	57	73.441	Anabas_testudineus
ENSPMEG00000006745	srl	99	94.771	ENSATEG00000024315	srl	100	95.117	Anabas_testudineus
ENSPMEG00000006745	srl	96	82.781	ENSACAG00000016380	SRL	90	78.862	Anolis_carolinensis
ENSPMEG00000006745	srl	100	93.926	ENSACLG00000027685	srl	100	94.904	Astatotilapia_calliptera
ENSPMEG00000006745	srl	99	74.200	ENSACLG00000024674	SRL	58	74.946	Astatotilapia_calliptera
ENSPMEG00000006745	srl	91	79.286	ENSAMXG00000038693	SRL	100	75.276	Astyanax_mexicanus
ENSPMEG00000006745	srl	99	90.393	ENSAMXG00000018789	srl	97	88.032	Astyanax_mexicanus
ENSPMEG00000006745	srl	98	82.262	ENSBTAG00000001078	SRL	57	82.262	Bos_taurus
ENSPMEG00000006745	srl	96	82.805	ENSCJAG00000019750	SRL	100	79.704	Callithrix_jacchus
ENSPMEG00000006745	srl	99	81.004	ENSCAFG00000019233	SRL	85	81.004	Canis_familiaris
ENSPMEG00000006745	srl	98	81.360	ENSCAFG00020025024	SRL	56	81.678	Canis_lupus_dingo
ENSPMEG00000006745	srl	99	81.481	ENSCHIG00000017927	SRL	57	81.898	Capra_hircus
ENSPMEG00000006745	srl	99	80.819	ENSTSYG00000007919	SRL	99	83.953	Carlito_syrichta
ENSPMEG00000006745	srl	97	82.697	ENSCPOG00000012643	SRL	100	80.085	Cavia_porcellus
ENSPMEG00000006745	srl	96	77.602	ENSCCAG00000032646	SRL	100	84.433	Cebus_capucinus
ENSPMEG00000006745	srl	97	82.247	ENSCATG00000032227	-	100	79.704	Cercocebus_atys
ENSPMEG00000006745	srl	97	82.921	ENSCLAG00000016242	SRL	100	80.297	Chinchilla_lanigera
ENSPMEG00000006745	srl	84	86.234	ENSCHOG00000001618	SRL	52	86.234	Choloepus_hoffmanni
ENSPMEG00000006745	srl	96	86.269	ENSCPBG00000026371	SRL	99	78.468	Chrysemys_picta_bellii
ENSPMEG00000006745	srl	90	60.671	ENSCING00000005231	-	93	60.671	Ciona_intestinalis
ENSPMEG00000006745	srl	98	81.099	ENSCANG00000035872	SRL	99	83.023	Colobus_angolensis_palliatus
ENSPMEG00000006745	srl	99	81.838	ENSCGRG00001016630	Srl	100	80.932	Cricetulus_griseus_chok1gshd
ENSPMEG00000006745	srl	99	81.838	ENSCGRG00000005458	Srl	100	80.932	Cricetulus_griseus_crigri
ENSPMEG00000006745	srl	99	74.026	ENSCSEG00000011866	SRL	93	74.242	Cynoglossus_semilaevis
ENSPMEG00000006745	srl	100	93.275	ENSCSEG00000016151	srl	100	94.468	Cynoglossus_semilaevis
ENSPMEG00000006745	srl	98	76.522	ENSCVAG00000022465	SRL	61	76.573	Cyprinodon_variegatus
ENSPMEG00000006745	srl	98	97.111	ENSCVAG00000003513	srl	100	96.809	Cyprinodon_variegatus
ENSPMEG00000006745	srl	82	78.125	ENSDARG00000112959	CABZ01072309.1	100	78.125	Danio_rerio
ENSPMEG00000006745	srl	100	90.239	ENSDARG00000104587	srl	100	90.234	Danio_rerio
ENSPMEG00000006745	srl	98	81.858	ENSDNOG00000011643	SRL	54	81.678	Dasypus_novemcinctus
ENSPMEG00000006745	srl	98	82.743	ENSDORG00000014807	Srl	100	80.720	Dipodomys_ordii
ENSPMEG00000006745	srl	80	66.043	ENSEBUG00000015937	srl	94	66.043	Eptatretus_burgeri
ENSPMEG00000006745	srl	98	82.262	ENSEASG00005000942	SRL	55	81.898	Equus_asinus_asinus
ENSPMEG00000006745	srl	98	82.262	ENSECAG00000024219	SRL	99	80.085	Equus_caballus
ENSPMEG00000006745	srl	100	84.937	ENSELUG00000015616	srl	100	84.600	Esox_lucius
ENSPMEG00000006745	srl	96	82.579	ENSFCAG00000022075	SRL	100	79.493	Felis_catus
ENSPMEG00000006745	srl	98	82.262	ENSFALG00000004328	SRL	63	83.636	Ficedula_albicollis
ENSPMEG00000006745	srl	97	83.596	ENSFDAG00000006199	SRL	100	81.144	Fukomys_damarensis
ENSPMEG00000006745	srl	96	77.703	ENSFHEG00000011854	SRL	99	77.928	Fundulus_heteroclitus
ENSPMEG00000006745	srl	98	97.556	ENSFHEG00000011239	srl	100	97.447	Fundulus_heteroclitus
ENSPMEG00000006745	srl	96	88.767	ENSGMOG00000014954	srl	100	88.767	Gadus_morhua
ENSPMEG00000006745	srl	99	81.878	ENSGALG00000038884	SRL	99	80.892	Gallus_gallus
ENSPMEG00000006745	srl	97	78.795	ENSGAFG00000016984	SRL	99	78.795	Gambusia_affinis
ENSPMEG00000006745	srl	100	99.566	ENSGAFG00000000010	srl	100	99.787	Gambusia_affinis
ENSPMEG00000006745	srl	96	92.088	ENSGACG00000011332	srl	100	92.088	Gasterosteus_aculeatus
ENSPMEG00000006745	srl	97	82.247	ENSGGOG00000011312	-	100	79.704	Gorilla_gorilla
ENSPMEG00000006745	srl	100	93.926	ENSHBUG00000007581	srl	100	94.904	Haplochromis_burtoni
ENSPMEG00000006745	srl	99	74.627	ENSHBUG00000015710	SRL	58	75.054	Haplochromis_burtoni
ENSPMEG00000006745	srl	97	83.371	ENSHGLG00000015271	SRL	100	80.720	Heterocephalus_glaber_female
ENSPMEG00000006745	srl	97	83.371	ENSHGLG00100019378	SRL	100	80.720	Heterocephalus_glaber_male
ENSPMEG00000006745	srl	96	75.824	ENSHCOG00000001012	SRL	50	75.824	Hippocampus_comes
ENSPMEG00000006745	srl	99	93.696	ENSHCOG00000008687	srl	99	95.312	Hippocampus_comes
ENSPMEG00000006745	srl	95	70.872	ENSIPUG00000011609	SRL	95	70.872	Ictalurus_punctatus
ENSPMEG00000006745	srl	99	90.217	ENSIPUG00000012513	srl	100	90.021	Ictalurus_punctatus
ENSPMEG00000006745	srl	97	83.146	ENSSTOG00000021151	-	100	80.297	Ictidomys_tridecemlineatus
ENSPMEG00000006745	srl	99	82.135	ENSJJAG00000016400	Srl	100	81.356	Jaculus_jaculus
ENSPMEG00000006745	srl	98	94.235	ENSKMAG00000014115	srl	95	95.652	Kryptolebias_marmoratus
ENSPMEG00000006745	srl	96	77.778	ENSKMAG00000019537	SRL	100	77.778	Kryptolebias_marmoratus
ENSPMEG00000006745	srl	96	76.697	ENSLBEG00000013811	SRL	95	76.923	Labrus_bergylta
ENSPMEG00000006745	srl	100	93.275	ENSLBEG00000026643	srl	100	94.268	Labrus_bergylta
ENSPMEG00000006745	srl	98	83.850	ENSLACG00000002825	SRL	100	83.850	Latimeria_chalumnae
ENSPMEG00000006745	srl	99	87.391	ENSLOCG00000002644	srl	98	87.391	Lepisosteus_oculatus
ENSPMEG00000006745	srl	96	82.579	ENSLAFG00000006329	SRL	50	82.579	Loxodonta_africana
ENSPMEG00000006745	srl	93	83.023	ENSMFAG00000037383	SRL	99	83.023	Macaca_fascicularis
ENSPMEG00000006745	srl	99	80.610	ENSMNEG00000019236	-	97	80.610	Macaca_nemestrina
ENSPMEG00000006745	srl	98	74.505	ENSMLEG00000032156	SRL	100	73.362	Mandrillus_leucophaeus
ENSPMEG00000006745	srl	96	76.432	ENSMAMG00000013756	SRL	53	76.432	Mastacembelus_armatus
ENSPMEG00000006745	srl	99	91.489	ENSMAMG00000023322	srl	99	92.340	Mastacembelus_armatus
ENSPMEG00000006745	srl	99	74.414	ENSMZEG00005004010	SRL	59	74.414	Maylandia_zebra
ENSPMEG00000006745	srl	100	93.926	ENSMZEG00005004548	srl	100	94.904	Maylandia_zebra
ENSPMEG00000006745	srl	98	82.080	ENSMGAG00000009342	SRL	96	84.433	Meleagris_gallopavo
ENSPMEG00000006745	srl	98	81.758	ENSMICG00000032307	SRL	100	80.338	Microcebus_murinus
ENSPMEG00000006745	srl	99	81.264	ENSMOCG00000008208	Srl	100	80.085	Microtus_ochrogaster
ENSPMEG00000006745	srl	98	94.000	ENSMMOG00000013970	srl	100	94.000	Mola_mola
ENSPMEG00000006745	srl	96	75.385	ENSMMOG00000021572	SRL	99	75.385	Mola_mola
ENSPMEG00000006745	srl	98	82.340	ENSMODG00000016380	-	50	83.784	Monodelphis_domestica
ENSPMEG00000006745	srl	91	78.282	ENSMALG00000000670	SRL	98	78.282	Monopterus_albus
ENSPMEG00000006745	srl	98	94.444	ENSMALG00000005039	srl	100	93.830	Monopterus_albus
ENSPMEG00000006745	srl	99	82.713	MGP_CAROLIEiJ_G0020400	Srl	100	81.992	Mus_caroli
ENSPMEG00000006745	srl	99	82.713	ENSMUSG00000022519	Srl	100	81.992	Mus_musculus
ENSPMEG00000006745	srl	99	82.713	MGP_SPRETEiJ_G0021294	Srl	100	81.992	Mus_spretus
ENSPMEG00000006745	srl	98	81.637	ENSMPUG00000015025	SRL	55	81.637	Mustela_putorius_furo
ENSPMEG00000006745	srl	98	82.018	ENSMLUG00000030733	SRL	56	83.146	Myotis_lucifugus
ENSPMEG00000006745	srl	97	84.045	ENSNGAG00000019741	Srl	100	81.356	Nannospalax_galili
ENSPMEG00000006745	srl	99	73.774	ENSNBRG00000002422	SRL	56	76.620	Neolamprologus_brichardi
ENSPMEG00000006745	srl	100	94.143	ENSNBRG00000023775	srl	100	95.117	Neolamprologus_brichardi
ENSPMEG00000006745	srl	97	76.854	ENSNLEG00000029051	SRL	100	74.419	Nomascus_leucogenys
ENSPMEG00000006745	srl	97	77.079	ENSOPRG00000000477	-	53	76.211	Ochotona_princeps
ENSPMEG00000006745	srl	97	83.371	ENSODEG00000013256	SRL	100	80.508	Octodon_degus
ENSPMEG00000006745	srl	99	94.105	ENSONIG00000005192	srl	100	92.547	Oreochromis_niloticus
ENSPMEG00000006745	srl	96	82.353	ENSOCUG00000025140	SRL	50	80.744	Oryctolagus_cuniculus
ENSPMEG00000006745	srl	96	75.847	ENSORLG00000015064	SRL	97	75.847	Oryzias_latipes
ENSPMEG00000006745	srl	98	95.778	ENSORLG00000008291	srl	100	96.907	Oryzias_latipes
ENSPMEG00000006745	srl	100	94.523	ENSORLG00020019784	srl	88	96.907	Oryzias_latipes_hni
ENSPMEG00000006745	srl	96	76.072	ENSORLG00020018173	SRL	97	76.072	Oryzias_latipes_hni
ENSPMEG00000006745	srl	98	95.778	ENSORLG00015009342	srl	100	94.650	Oryzias_latipes_hsok
ENSPMEG00000006745	srl	96	76.072	ENSORLG00015019063	SRL	97	76.072	Oryzias_latipes_hsok
ENSPMEG00000006745	srl	98	95.778	ENSOMEG00000010006	srl	100	95.532	Oryzias_melastigma
ENSPMEG00000006745	srl	96	74.561	ENSOMEG00000005682	SRL	53	74.836	Oryzias_melastigma
ENSPMEG00000006745	srl	97	82.472	ENSOGAG00000029266	SRL	55	81.498	Otolemur_garnettii
ENSPMEG00000006745	srl	99	81.481	ENSOARG00000003074	SRL	56	82.883	Ovis_aries
ENSPMEG00000006745	srl	97	82.247	ENSPPAG00000024919	-	99	83.023	Pan_paniscus
ENSPMEG00000006745	srl	96	82.579	ENSPPRG00000010274	SRL	99	83.023	Panthera_pardus
ENSPMEG00000006745	srl	96	82.579	ENSPTIG00000015162	SRL	99	83.023	Panthera_tigris_altaica
ENSPMEG00000006745	srl	97	82.247	ENSPTRG00000007712	SRL	99	83.023	Pan_troglodytes
ENSPMEG00000006745	srl	99	80.610	ENSPANG00000013804	SRL	98	81.099	Papio_anubis
ENSPMEG00000006745	srl	96	79.955	ENSPKIG00000024974	SRL	97	76.892	Paramormyrops_kingsleyae
ENSPMEG00000006745	srl	99	89.760	ENSPKIG00000006405	srl	100	89.241	Paramormyrops_kingsleyae
ENSPMEG00000006745	srl	96	83.108	ENSPSIG00000008586	SRL	50	83.108	Pelodiscus_sinensis
ENSPMEG00000006745	srl	96	95.249	ENSPMGG00000021081	srl	95	95.249	Periophthalmus_magnuspinnatus
ENSPMEG00000006745	srl	96	76.471	ENSPMGG00000023505	-	99	76.471	Periophthalmus_magnuspinnatus
ENSPMEG00000006745	srl	97	83.146	ENSPEMG00000015842	Srl	100	80.720	Peromyscus_maniculatus_bairdii
ENSPMEG00000006745	srl	91	67.890	ENSPMAG00000004786	srl	99	67.890	Petromyzon_marinus
ENSPMEG00000006745	srl	98	82.483	ENSPCIG00000012128	SRL	98	82.483	Phascolarctos_cinereus
ENSPMEG00000006745	srl	100	97.624	ENSPFOG00000011408	srl	100	97.624	Poecilia_formosa
ENSPMEG00000006745	srl	100	100.000	ENSPLAG00000008017	srl	100	100.000	Poecilia_latipinna
ENSPMEG00000006745	srl	97	77.232	ENSPLAG00000002932	SRL	99	77.232	Poecilia_latipinna
ENSPMEG00000006745	srl	100	99.594	ENSPREG00000007751	srl	100	99.557	Poecilia_reticulata
ENSPMEG00000006745	srl	97	78.125	ENSPREG00000000315	SRL	99	78.125	Poecilia_reticulata
ENSPMEG00000006745	srl	91	84.487	ENSPPYG00000007053	SRL	98	84.487	Pongo_abelii
ENSPMEG00000006745	srl	96	83.447	ENSPCAG00000003378	-	50	83.447	Procavia_capensis
ENSPMEG00000006745	srl	98	81.758	ENSPCOG00000023135	SRL	99	83.953	Propithecus_coquereli
ENSPMEG00000006745	srl	98	82.301	ENSPVAG00000006586	SRL	55	82.301	Pteropus_vampyrus
ENSPMEG00000006745	srl	99	74.414	ENSPNYG00000003423	SRL	58	74.839	Pundamilia_nyererei
ENSPMEG00000006745	srl	100	93.709	ENSPNYG00000001200	srl	100	94.692	Pundamilia_nyererei
ENSPMEG00000006745	srl	99	74.837	ENSPNAG00000007361	-	95	74.837	Pygocentrus_nattereri
ENSPMEG00000006745	srl	100	89.154	ENSPNAG00000023106	srl	100	88.936	Pygocentrus_nattereri
ENSPMEG00000006745	srl	98	82.965	ENSRNOG00000005269	Srl	50	82.965	Rattus_norvegicus
ENSPMEG00000006745	srl	96	82.805	ENSSBOG00000029273	SRL	100	79.704	Saimiri_boliviensis_boliviensis
ENSPMEG00000006745	srl	99	82.018	ENSSHAG00000011715	-	50	83.559	Sarcophilus_harrisii
ENSPMEG00000006745	srl	96	77.477	ENSSFOG00015021327	SRL	50	77.232	Scleropages_formosus
ENSPMEG00000006745	srl	96	91.667	ENSSFOG00015009773	srl	99	89.201	Scleropages_formosus
ENSPMEG00000006745	srl	99	92.779	ENSSMAG00000016274	srl	100	93.843	Scophthalmus_maximus
ENSPMEG00000006745	srl	96	74.945	ENSSMAG00000002232	SRL	50	74.945	Scophthalmus_maximus
ENSPMEG00000006745	srl	96	78.000	ENSSDUG00000009161	SRL	99	78.000	Seriola_dumerili
ENSPMEG00000006745	srl	96	96.622	ENSSDUG00000010808	srl	98	96.622	Seriola_dumerili
ENSPMEG00000006745	srl	98	95.778	ENSSLDG00000022024	srl	100	95.106	Seriola_lalandi_dorsalis
ENSPMEG00000006745	srl	96	77.729	ENSSLDG00000014601	SRL	100	78.289	Seriola_lalandi_dorsalis
ENSPMEG00000006745	srl	98	82.340	ENSSPUG00000016859	SRL	99	82.522	Sphenodon_punctatus
ENSPMEG00000006745	srl	99	94.118	ENSSPAG00000019105	srl	100	94.915	Stegastes_partitus
ENSPMEG00000006745	srl	96	79.365	ENSSPAG00000014254	SRL	98	79.365	Stegastes_partitus
ENSPMEG00000006745	srl	98	81.596	ENSSSCG00000007949	SRL	99	82.207	Sus_scrofa
ENSPMEG00000006745	srl	79	86.464	ENSTGUG00000016121	-	100	86.464	Taeniopygia_guttata
ENSPMEG00000006745	srl	98	82.483	ENSTGUG00000003951	-	99	82.483	Taeniopygia_guttata
ENSPMEG00000006745	srl	91	78.520	ENSTRUG00000013310	SRL	55	78.333	Takifugu_rubripes
ENSPMEG00000006745	srl	99	94.105	ENSTRUG00000006005	srl	100	94.894	Takifugu_rubripes
ENSPMEG00000006745	srl	98	95.111	ENSTNIG00000009739	srl	100	94.043	Tetraodon_nigroviridis
ENSPMEG00000006745	srl	98	81.278	ENSUAMG00000005701	SRL	56	81.637	Ursus_americanus
ENSPMEG00000006745	srl	98	81.278	ENSUMAG00000002574	SRL	56	81.637	Ursus_maritimus
ENSPMEG00000006745	srl	97	81.678	ENSVVUG00000016331	-	50	81.678	Vulpes_vulpes
ENSPMEG00000006745	srl	99	80.828	ENSXETG00000017313	srl	99	82.247	Xenopus_tropicalis
ENSPMEG00000006745	srl	98	78.444	ENSXCOG00000014584	SRL	100	78.271	Xiphophorus_couchianus
ENSPMEG00000006745	srl	91	98.812	ENSXCOG00000010424	srl	97	98.812	Xiphophorus_couchianus
ENSPMEG00000006745	srl	100	99.189	ENSXMAG00000004625	srl	100	99.189	Xiphophorus_maculatus
ENSPMEG00000006745	srl	98	75.751	ENSXMAG00000027598	SRL	63	76.026	Xiphophorus_maculatus