EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000006943 (Gene tree)
Gene ID: 106913880
Gene Symbol: -
Alias: -
Full Name: SWT1%2C RNA endoribonuclease homolog
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 38717 bases
Position: chrKQ551085.1:401981-440697
Accession: 106913880
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000024565	PIN_4	PF13638.6	4.4e-29	1	1
ENSPMEP00000005559	PIN_4	PF13638.6	4.5e-29	1	1
ENSPMEP00000005563	PIN_4	PF13638.6	4.5e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000007290	-	4857	-	ENSPMEP00000005563	967 (aa)	-	UPI00072ECA2E
ENSPMET00000007299	-	5088	-	ENSPMEP00000024565	963 (aa)	-	-
ENSPMET00000007306	-	5005	XM_014980313	ENSPMEP00000005559	967 (aa)	XP_014835799	UPI00072ECA2E

Gene Model

Click here to download ENSPMEG00000006943's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000006943's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000006943	-	60	31.736	ENSG00000116668	SWT1	61	31.736	Homo_sapiens
ENSPMEG00000006943	-	98	50.409	ENSAPOG00000014897	-	99	50.302	Acanthochromis_polyacanthus
ENSPMEG00000006943	-	68	31.466	ENSAMEG00000013585	SWT1	72	31.466	Ailuropoda_melanoleuca
ENSPMEG00000006943	-	97	49.074	ENSAOCG00000013932	swt1	100	48.849	Amphiprion_ocellaris
ENSPMEG00000006943	-	98	49.187	ENSAPEG00000009613	-	100	49.202	Amphiprion_percula
ENSPMEG00000006943	-	98	48.923	ENSATEG00000018946	swt1	99	49.195	Anabas_testudineus
ENSPMEG00000006943	-	58	36.752	ENSAPLG00000008607	SWT1	74	36.752	Anas_platyrhynchos
ENSPMEG00000006943	-	59	34.010	ENSACAG00000002276	SWT1	64	34.010	Anolis_carolinensis
ENSPMEG00000006943	-	58	32.877	ENSANAG00000027068	SWT1	59	32.877	Aotus_nancymaae
ENSPMEG00000006943	-	76	62.409	ENSACLG00000009742	swt1	93	63.553	Astatotilapia_calliptera
ENSPMEG00000006943	-	61	44.959	ENSAMXG00000010971	swt1	73	39.309	Astyanax_mexicanus
ENSPMEG00000006943	-	58	32.879	ENSCJAG00000005544	SWT1	59	32.879	Callithrix_jacchus
ENSPMEG00000006943	-	68	31.857	ENSCAFG00000013543	SWT1	73	31.471	Canis_familiaris
ENSPMEG00000006943	-	68	31.857	ENSCAFG00020015648	SWT1	77	31.857	Canis_lupus_dingo
ENSPMEG00000006943	-	58	32.594	ENSCHIG00000023511	SWT1	92	32.432	Capra_hircus
ENSPMEG00000006943	-	62	32.748	ENSTSYG00000010470	SWT1	64	32.748	Carlito_syrichta
ENSPMEG00000006943	-	54	33.818	ENSCPOG00000014251	SWT1	62	33.818	Cavia_porcellus
ENSPMEG00000006943	-	58	32.538	ENSCCAG00000033926	SWT1	59	32.538	Cebus_capucinus
ENSPMEG00000006943	-	60	33.003	ENSCATG00000042210	SWT1	95	33.003	Cercocebus_atys
ENSPMEG00000006943	-	68	30.889	ENSCLAG00000013959	SWT1	74	30.889	Chinchilla_lanigera
ENSPMEG00000006943	-	60	32.178	ENSCSAG00000012895	SWT1	61	32.178	Chlorocebus_sabaeus
ENSPMEG00000006943	-	58	34.583	ENSCPBG00000015691	SWT1	60	34.753	Chrysemys_picta_bellii
ENSPMEG00000006943	-	60	31.947	ENSCANG00000032207	SWT1	95	31.947	Colobus_angolensis_palliatus
ENSPMEG00000006943	-	68	32.847	ENSCGRG00001022955	Swt1	72	32.847	Cricetulus_griseus_chok1gshd
ENSPMEG00000006943	-	60	34.163	ENSCGRG00000010224	Swt1	62	34.163	Cricetulus_griseus_crigri
ENSPMEG00000006943	-	62	58.775	ENSCSEG00000017352	swt1	86	54.748	Cynoglossus_semilaevis
ENSPMEG00000006943	-	59	45.783	ENSDARG00000094010	swt1	56	45.704	Danio_rerio
ENSPMEG00000006943	-	51	31.915	ENSDNOG00000005254	SWT1	58	31.915	Dasypus_novemcinctus
ENSPMEG00000006943	-	58	32.715	ENSDORG00000010531	Swt1	64	33.727	Dipodomys_ordii
ENSPMEG00000006943	-	58	33.162	ENSEASG00005005530	SWT1	63	32.935	Equus_asinus_asinus
ENSPMEG00000006943	-	59	49.402	ENSELUG00000020565	swt1	56	49.660	Esox_lucius
ENSPMEG00000006943	-	58	33.562	ENSFCAG00000011286	SWT1	60	33.562	Felis_catus
ENSPMEG00000006943	-	62	33.812	ENSFALG00000003206	SWT1	65	33.812	Ficedula_albicollis
ENSPMEG00000006943	-	58	34.354	ENSFDAG00000007569	SWT1	61	34.354	Fukomys_damarensis
ENSPMEG00000006943	-	58	30.795	ENSGALG00000034230	SWT1	62	35.434	Gallus_gallus
ENSPMEG00000006943	-	100	87.901	ENSGAFG00000007803	-	100	87.901	Gambusia_affinis
ENSPMEG00000006943	-	58	35.800	ENSGAGG00000025050	SWT1	93	35.800	Gopherus_agassizii
ENSPMEG00000006943	-	53	32.276	ENSGGOG00000041167	-	90	32.276	Gorilla_gorilla
ENSPMEG00000006943	-	79	62.284	ENSHBUG00000006188	swt1	93	63.368	Haplochromis_burtoni
ENSPMEG00000006943	-	58	34.701	ENSHGLG00000006542	SWT1	63	34.701	Heterocephalus_glaber_female
ENSPMEG00000006943	-	58	35.043	ENSHGLG00100014408	SWT1	61	35.043	Heterocephalus_glaber_male
ENSPMEG00000006943	-	58	44.444	ENSIPUG00000009113	-	56	44.444	Ictalurus_punctatus
ENSPMEG00000006943	-	68	32.040	ENSSTOG00000010356	SWT1	74	32.051	Ictidomys_tridecemlineatus
ENSPMEG00000006943	-	58	33.675	ENSJJAG00000015927	Swt1	63	33.791	Jaculus_jaculus
ENSPMEG00000006943	-	99	50.601	ENSKMAG00000012533	swt1	99	50.200	Kryptolebias_marmoratus
ENSPMEG00000006943	-	95	47.934	ENSLBEG00000020663	-	99	47.264	Labrus_bergylta
ENSPMEG00000006943	-	60	36.745	ENSLACG00000009194	SWT1	79	36.745	Latimeria_chalumnae
ENSPMEG00000006943	-	57	40.972	ENSLOCG00000001749	swt1	99	40.972	Lepisosteus_oculatus
ENSPMEG00000006943	-	58	32.095	ENSLAFG00000004346	-	93	32.095	Loxodonta_africana
ENSPMEG00000006943	-	60	33.003	ENSMFAG00000031793	SWT1	96	33.003	Macaca_fascicularis
ENSPMEG00000006943	-	60	32.721	ENSMMUG00000013882	SWT1	95	32.721	Macaca_mulatta
ENSPMEG00000006943	-	60	33.056	ENSMNEG00000035502	SWT1	96	33.003	Macaca_nemestrina
ENSPMEG00000006943	-	60	32.838	ENSMLEG00000038692	SWT1	95	32.838	Mandrillus_leucophaeus
ENSPMEG00000006943	-	79	62.111	ENSMZEG00005018489	swt1	93	63.194	Maylandia_zebra
ENSPMEG00000006943	-	58	36.425	ENSMGAG00000000973	SWT1	93	36.425	Meleagris_gallopavo
ENSPMEG00000006943	-	60	31.197	ENSMAUG00000007996	Swt1	59	31.197	Mesocricetus_auratus
ENSPMEG00000006943	-	60	33.611	ENSMICG00000014975	SWT1	62	33.611	Microcebus_murinus
ENSPMEG00000006943	-	68	31.897	ENSMOCG00000009776	Swt1	72	31.897	Microtus_ochrogaster
ENSPMEG00000006943	-	58	33.447	ENSMODG00000007472	SWT1	59	33.447	Monodelphis_domestica
ENSPMEG00000006943	-	98	47.047	ENSMALG00000019308	swt1	99	47.112	Monopterus_albus
ENSPMEG00000006943	-	59	34.471	MGP_CAROLIEiJ_G0014692	Swt1	64	45.625	Mus_caroli
ENSPMEG00000006943	-	59	33.788	ENSMUSG00000052748	Swt1	78	40.000	Mus_musculus
ENSPMEG00000006943	-	60	33.940	MGP_PahariEiJ_G0027928	Swt1	69	43.678	Mus_pahari
ENSPMEG00000006943	-	59	34.300	MGP_SPRETEiJ_G0015499	Swt1	79	41.000	Mus_spretus
ENSPMEG00000006943	-	62	33.977	ENSMPUG00000011913	SWT1	64	33.977	Mustela_putorius_furo
ENSPMEG00000006943	-	58	32.823	ENSMLUG00000001142	SWT1	59	32.823	Myotis_lucifugus
ENSPMEG00000006943	-	59	34.412	ENSNGAG00000021080	Swt1	60	34.412	Nannospalax_galili
ENSPMEG00000006943	-	60	31.623	ENSNLEG00000018031	SWT1	61	31.623	Nomascus_leucogenys
ENSPMEG00000006943	-	80	61.960	ENSONIG00000009994	swt1	94	63.123	Oreochromis_niloticus
ENSPMEG00000006943	-	58	32.487	ENSOANG00000001013	-	69	32.487	Ornithorhynchus_anatinus
ENSPMEG00000006943	-	68	32.189	ENSOCUG00000004901	SWT1	72	32.189	Oryctolagus_cuniculus
ENSPMEG00000006943	-	96	48.000	ENSORLG00000009682	swt1	99	47.557	Oryzias_latipes
ENSPMEG00000006943	-	98	47.835	ENSORLG00020011654	swt1	99	47.662	Oryzias_latipes_hni
ENSPMEG00000006943	-	96	48.205	ENSORLG00015007734	swt1	99	47.865	Oryzias_latipes_hsok
ENSPMEG00000006943	-	96	48.816	ENSOMEG00000006607	swt1	99	48.557	Oryzias_melastigma
ENSPMEG00000006943	-	60	33.828	ENSOGAG00000016195	SWT1	62	33.663	Otolemur_garnettii
ENSPMEG00000006943	-	58	32.423	ENSOARG00000004156	SWT1	59	32.423	Ovis_aries
ENSPMEG00000006943	-	60	31.736	ENSPPAG00000021400	SWT1	61	31.736	Pan_paniscus
ENSPMEG00000006943	-	58	33.733	ENSPPRG00000023754	SWT1	60	33.733	Panthera_pardus
ENSPMEG00000006943	-	58	33.733	ENSPTIG00000021889	SWT1	60	33.733	Panthera_tigris_altaica
ENSPMEG00000006943	-	60	31.901	ENSPTRG00000001777	SWT1	61	31.901	Pan_troglodytes
ENSPMEG00000006943	-	60	32.733	ENSPANG00000005099	SWT1	95	32.733	Papio_anubis
ENSPMEG00000006943	-	59	45.095	ENSPKIG00000005979	swt1	58	45.095	Paramormyrops_kingsleyae
ENSPMEG00000006943	-	61	34.036	ENSPSIG00000008961	SWT1	62	34.036	Pelodiscus_sinensis
ENSPMEG00000006943	-	54	41.762	ENSPMGG00000000152	-	67	43.050	Periophthalmus_magnuspinnatus
ENSPMEG00000006943	-	60	34.500	ENSPEMG00000008208	Swt1	61	34.500	Peromyscus_maniculatus_bairdii
ENSPMEG00000006943	-	60	32.358	ENSPCIG00000002443	SWT1	62	32.358	Phascolarctos_cinereus
ENSPMEG00000006943	-	100	99.173	ENSPFOG00000010988	-	100	99.173	Poecilia_formosa
ENSPMEG00000006943	-	100	98.656	ENSPLAG00000022908	-	100	98.656	Poecilia_latipinna
ENSPMEG00000006943	-	67	94.915	ENSPREG00000014723	-	92	94.915	Poecilia_reticulata
ENSPMEG00000006943	-	60	32.468	ENSPPYG00000000415	SWT1	62	32.468	Pongo_abelii
ENSPMEG00000006943	-	58	31.516	ENSPVAG00000005968	SWT1	60	31.409	Pteropus_vampyrus
ENSPMEG00000006943	-	79	62.284	ENSPNYG00000012934	swt1	93	63.368	Pundamilia_nyererei
ENSPMEG00000006943	-	69	42.734	ENSPNAG00000017795	swt1	56	47.049	Pygocentrus_nattereri
ENSPMEG00000006943	-	68	32.258	ENSRNOG00000032258	Swt1	72	32.092	Rattus_norvegicus
ENSPMEG00000006943	-	60	32.161	ENSRBIG00000040630	SWT1	95	31.993	Rhinopithecus_bieti
ENSPMEG00000006943	-	72	30.833	ENSSBOG00000028825	SWT1	74	30.833	Saimiri_boliviensis_boliviensis
ENSPMEG00000006943	-	58	34.412	ENSSHAG00000009241	SWT1	60	34.412	Sarcophilus_harrisii
ENSPMEG00000006943	-	58	46.046	ENSSFOG00015004895	swt1	55	45.965	Scleropages_formosus
ENSPMEG00000006943	-	67	57.951	ENSSMAG00000020761	-	57	56.425	Scophthalmus_maximus
ENSPMEG00000006943	-	98	50.825	ENSSDUG00000012345	swt1	99	50.913	Seriola_dumerili
ENSPMEG00000006943	-	98	51.134	ENSSLDG00000003821	swt1	99	50.913	Seriola_lalandi_dorsalis
ENSPMEG00000006943	-	60	35.197	ENSSPUG00000003899	SWT1	61	35.197	Sphenodon_punctatus
ENSPMEG00000006943	-	97	51.230	ENSSPAG00000001030	swt1	99	51.049	Stegastes_partitus
ENSPMEG00000006943	-	59	33.618	ENSSSCG00000015569	SWT1	62	34.010	Sus_scrofa
ENSPMEG00000006943	-	58	34.812	ENSTGUG00000003718	-	97	34.812	Taeniopygia_guttata
ENSPMEG00000006943	-	99	42.695	ENSTRUG00000006420	swt1	99	42.695	Takifugu_rubripes
ENSPMEG00000006943	-	58	32.598	ENSTTRG00000005914	SWT1	60	32.598	Tursiops_truncatus
ENSPMEG00000006943	-	68	31.556	ENSUAMG00000020937	SWT1	78	31.412	Ursus_americanus
ENSPMEG00000006943	-	68	31.079	ENSUMAG00000021918	SWT1	74	31.065	Ursus_maritimus
ENSPMEG00000006943	-	68	31.857	ENSVVUG00000009182	SWT1	75	31.857	Vulpes_vulpes
ENSPMEG00000006943	-	100	89.990	ENSXMAG00000023472	-	100	89.990	Xiphophorus_maculatus