EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000007153 (Gene tree)
Gene ID: -
Gene Symbol: ptcd3
Alias: -
Full Name: pentatricopeptide repeat domain 3
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 9921 bases
Position: chrKQ552758.1:179734-189654
Accession: 106903285
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000024441	PPR	PF01535.20	2.5e-06	1	1
ENSPMEP00000005186	PPR	PF01535.20	7.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000007913	-	1437	-	ENSPMEP00000005186	479 (aa)	-	-
ENSPMET00000007695	-	1593	-	ENSPMEP00000005317	530 (aa)	-	-
ENSPMET00000007515	-	1857	-	ENSPMEP00000005426	618 (aa)	-	-
ENSPMET00000007998	-	600	-	ENSPMEP00000024299	199 (aa)	-	-
ENSPMET00000007636	-	1719	XM_014966979	ENSPMEP00000024441	572 (aa)	XP_014822465	-

Gene Model

Click here to download ENSPMEG00000007153's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000007153's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000007153	ptcd3	100	71.698	ENSACIG00000022263	ptcd3	98	67.899	Amphilophus_citrinellus
ENSPMEG00000007153	ptcd3	100	68.771	ENSAOCG00000017186	ptcd3	86	68.430	Amphiprion_ocellaris
ENSPMEG00000007153	ptcd3	100	68.942	ENSAPEG00000016069	ptcd3	86	68.601	Amphiprion_percula
ENSPMEG00000007153	ptcd3	98	44.013	ENSAPLG00000005086	PTCD3	96	43.463	Anas_platyrhynchos
ENSPMEG00000007153	ptcd3	100	73.038	ENSACLG00000020653	ptcd3	88	73.038	Astatotilapia_calliptera
ENSPMEG00000007153	ptcd3	100	53.467	ENSAMXG00000011570	ptcd3	88	53.242	Astyanax_mexicanus
ENSPMEG00000007153	ptcd3	100	74.061	ENSCVAG00000020820	ptcd3	96	74.061	Cyprinodon_variegatus
ENSPMEG00000007153	ptcd3	97	80.680	ENSGAFG00000015291	ptcd3	94	80.859	Gambusia_affinis
ENSPMEG00000007153	ptcd3	100	73.038	ENSHBUG00000020056	ptcd3	93	73.038	Haplochromis_burtoni
ENSPMEG00000007153	ptcd3	100	67.462	ENSLBEG00000015349	ptcd3	88	67.462	Labrus_bergylta
ENSPMEG00000007153	ptcd3	100	73.038	ENSMZEG00005004980	ptcd3	88	73.038	Maylandia_zebra
ENSPMEG00000007153	ptcd3	100	41.582	ENSMGAG00000013124	PTCD3	94	41.582	Meleagris_gallopavo
ENSPMEG00000007153	ptcd3	100	69.610	ENSMALG00000013282	ptcd3	88	69.610	Monopterus_albus
ENSPMEG00000007153	ptcd3	100	73.964	ENSNBRG00000000447	ptcd3	98	68.977	Neolamprologus_brichardi
ENSPMEG00000007153	ptcd3	100	73.038	ENSONIG00000015886	ptcd3	92	72.743	Oreochromis_niloticus
ENSPMEG00000007153	ptcd3	100	70.819	ENSORLG00000008776	ptcd3	90	70.819	Oryzias_latipes
ENSPMEG00000007153	ptcd3	100	70.648	ENSORLG00020020676	ptcd3	87	70.648	Oryzias_latipes_hni
ENSPMEG00000007153	ptcd3	98	63.979	ENSORLG00015015978	ptcd3	99	63.979	Oryzias_latipes_hsok
ENSPMEG00000007153	ptcd3	100	89.590	ENSPFOG00000004442	ptcd3	92	89.420	Poecilia_formosa
ENSPMEG00000007153	ptcd3	94	84.221	ENSPLAG00000021401	ptcd3	89	85.331	Poecilia_latipinna
ENSPMEG00000007153	ptcd3	100	50.500	ENSSFOG00015019643	ptcd3	95	50.500	Scleropages_formosus
ENSPMEG00000007153	ptcd3	91	45.935	ENSTGUG00000010760	PTCD3	97	46.958	Taeniopygia_guttata
ENSPMEG00000007153	ptcd3	100	62.564	ENSTRUG00000003939	ptcd3	90	62.564	Takifugu_rubripes