EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000007869 (Gene tree)
Gene ID: 106923072
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 8392 bases
Position: chrKQ551582.1:115124-123515
Accession: 106923072
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000006370	zf-C2H2	PF00096.26	9.3e-19	1	3
ENSPMEP00000006370	zf-C2H2	PF00096.26	9.3e-19	2	3
ENSPMEP00000006370	zf-C2H2	PF00096.26	9.3e-19	3	3
ENSPMEP00000006350	zf-C2H2	PF00096.26	1e-18	1	3
ENSPMEP00000006350	zf-C2H2	PF00096.26	1e-18	2	3
ENSPMEP00000006350	zf-C2H2	PF00096.26	1e-18	3	3
ENSPMEP00000006370	zf-met	PF12874.7	5.3e-07	1	1
ENSPMEP00000006350	zf-met	PF12874.7	5.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000005966	-	1893	-	ENSPMEP00000006350	630 (aa)	-	-
ENSPMET00000005944	-	4367	XM_014995934	ENSPMEP00000006370	619 (aa)	XP_014851420	UPI00072E8EFF
ENSPMET00000005992	-	1333	XM_014995932	ENSPMEP00000006343	444 (aa)	XP_014851418	-

Gene Model

Click here to download ENSPMEG00000007869's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000007869's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000007869	prdm1b	50	43.902	ENSPMEG00000022676	-	99	43.902

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000007869	prdm1b	95	36.898	ENSAPOG00000014135	-	81	36.898	Acanthochromis_polyacanthus
ENSPMEG00000007869	prdm1b	73	70.175	ENSAPOG00000022084	prdm1b	96	71.711	Acanthochromis_polyacanthus
ENSPMEG00000007869	prdm1b	97	78.783	ENSACIG00000014426	prdm1b	98	78.783	Amphilophus_citrinellus
ENSPMEG00000007869	prdm1b	94	75.129	ENSAOCG00000002230	prdm1b	98	75.129	Amphiprion_ocellaris
ENSPMEG00000007869	prdm1b	100	74.235	ENSAPEG00000019826	prdm1b	100	74.235	Amphiprion_percula
ENSPMEG00000007869	prdm1b	100	81.717	ENSATEG00000006924	prdm1b	100	81.717	Anabas_testudineus
ENSPMEG00000007869	prdm1b	74	60.563	ENSATEG00000021017	prdm1a	57	61.111	Anabas_testudineus
ENSPMEG00000007869	prdm1b	93	83.304	ENSACLG00000005487	prdm1b	90	83.304	Astatotilapia_calliptera
ENSPMEG00000007869	prdm1b	68	57.746	ENSCSEG00000009707	prdm1a	58	58.333	Cynoglossus_semilaevis
ENSPMEG00000007869	prdm1b	99	85.761	ENSCVAG00000016746	prdm1b	99	84.653	Cyprinodon_variegatus
ENSPMEG00000007869	prdm1b	55	60.563	ENSCVAG00000019081	prdm1a	58	60.563	Cyprinodon_variegatus
ENSPMEG00000007869	prdm1b	100	88.207	ENSFHEG00000019848	prdm1b	100	88.207	Fundulus_heteroclitus
ENSPMEG00000007869	prdm1b	97	91.843	ENSGAFG00000016191	prdm1b	97	91.843	Gambusia_affinis
ENSPMEG00000007869	prdm1b	91	69.771	ENSGACG00000002716	prdm1b	86	69.935	Gasterosteus_aculeatus
ENSPMEG00000007869	prdm1b	92	83.770	ENSHBUG00000001475	prdm1b	95	83.770	Haplochromis_burtoni
ENSPMEG00000007869	prdm1b	100	72.930	ENSHCOG00000003617	prdm1b	100	72.930	Hippocampus_comes
ENSPMEG00000007869	prdm1b	87	65.217	ENSIPUG00000013740	prdm1b	92	55.366	Ictalurus_punctatus
ENSPMEG00000007869	prdm1b	91	75.795	ENSKMAG00000011218	prdm1b	91	75.795	Kryptolebias_marmoratus
ENSPMEG00000007869	prdm1b	88	38.259	ENSKMAG00000016247	-	75	38.259	Kryptolebias_marmoratus
ENSPMEG00000007869	prdm1b	60	61.972	ENSKMAG00000017597	prdm1a	51	62.500	Kryptolebias_marmoratus
ENSPMEG00000007869	prdm1b	100	81.587	ENSLBEG00000020955	prdm1b	100	81.587	Labrus_bergylta
ENSPMEG00000007869	prdm1b	80	76.389	ENSLOCG00000004978	prdm1b	65	76.389	Lepisosteus_oculatus
ENSPMEG00000007869	prdm1b	100	80.806	ENSMZEG00005026361	prdm1b	95	80.806	Maylandia_zebra
ENSPMEG00000007869	prdm1b	93	81.520	ENSMMOG00000013458	prdm1b	96	81.520	Mola_mola
ENSPMEG00000007869	prdm1b	97	76.733	ENSMALG00000011410	prdm1b	99	76.898	Monopterus_albus
ENSPMEG00000007869	prdm1b	90	87.342	ENSONIG00000013583	prdm1b	86	66.667	Oreochromis_niloticus
ENSPMEG00000007869	prdm1b	99	67.930	ENSORLG00000010025	prdm1b	99	67.818	Oryzias_latipes
ENSPMEG00000007869	prdm1b	90	70.103	ENSORLG00015009022	prdm1b	93	69.128	Oryzias_latipes_hsok
ENSPMEG00000007869	prdm1b	99	49.349	ENSPKIG00000022335	prdm1b	82	48.627	Paramormyrops_kingsleyae
ENSPMEG00000007869	prdm1b	86	80.978	ENSPFOG00000003103	prdm1b	85	80.978	Poecilia_formosa
ENSPMEG00000007869	prdm1b	100	99.365	ENSPLAG00000018491	prdm1b	100	99.365	Poecilia_latipinna
ENSPMEG00000007869	prdm1b	99	97.003	ENSPREG00000011327	prdm1b	99	97.003	Poecilia_reticulata
ENSPMEG00000007869	prdm1b	90	40.979	ENSPVAG00000011732	PRDM1	80	41.159	Pteropus_vampyrus
ENSPMEG00000007869	prdm1b	89	41.556	ENSPNAG00000028442	prdm1a	56	61.111	Pygocentrus_nattereri
ENSPMEG00000007869	prdm1b	90	60.144	ENSSFOG00015021896	prdm1b	78	59.541	Scleropages_formosus
ENSPMEG00000007869	prdm1b	100	79.140	ENSSMAG00000020467	prdm1b	100	79.470	Scophthalmus_maximus
ENSPMEG00000007869	prdm1b	91	38.028	ENSSMAG00000017518	-	78	38.028	Scophthalmus_maximus
ENSPMEG00000007869	prdm1b	100	83.121	ENSSDUG00000020610	prdm1b	100	83.121	Seriola_dumerili
ENSPMEG00000007869	prdm1b	88	36.378	ENSSDUG00000000524	-	75	36.378	Seriola_dumerili
ENSPMEG00000007869	prdm1b	99	82.880	ENSSLDG00000021973	prdm1b	99	82.237	Seriola_lalandi_dorsalis
ENSPMEG00000007869	prdm1b	92	38.043	ENSSPAG00000009830	-	79	38.043	Stegastes_partitus
ENSPMEG00000007869	prdm1b	100	80.645	ENSSPAG00000000803	prdm1b	100	80.968	Stegastes_partitus
ENSPMEG00000007869	prdm1b	95	91.993	ENSXCOG00000018920	prdm1b	84	91.993	Xiphophorus_couchianus
ENSPMEG00000007869	prdm1b	99	83.951	ENSXMAG00000016765	prdm1b	94	89.983	Xiphophorus_maculatus