EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000008322 (Gene tree)
Gene ID: 106927491
Gene Symbol: pspc1
Alias: -
Full Name: paraspeckle component 1-like
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 13722 bases
Position: chrKQ551936.1:155765-169486
Accession: 106927491
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000006779	RRM_1	PF00076.22	6.9e-32	1	2
ENSPMEP00000006779	RRM_1	PF00076.22	6.9e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000005226	-	4891	XM_015003111	ENSPMEP00000006779	517 (aa)	XP_014858597	UPI00072DD424

Gene Model

Click here to download ENSPMEG00000008322's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000008322's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000008322	pspc1	73	60.582	ENSPMEG00000021530	nono	88	57.882
ENSPMEG00000008322	pspc1	62	60.185	ENSPMEG00000001025	-	59	53.659

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000008322	pspc1	87	67.653	ENSG00000121390	PSPC1	97	68.514	Homo_sapiens
ENSPMEG00000008322	pspc1	100	80.114	ENSAPOG00000015946	pspc1	100	79.167	Acanthochromis_polyacanthus
ENSPMEG00000008322	pspc1	93	65.538	ENSAMEG00000017420	PSPC1	93	66.600	Ailuropoda_melanoleuca
ENSPMEG00000008322	pspc1	100	72.762	ENSACIG00000018695	pspc1	100	71.810	Amphilophus_citrinellus
ENSPMEG00000008322	pspc1	100	80.377	ENSAOCG00000005279	pspc1	100	79.811	Amphiprion_ocellaris
ENSPMEG00000008322	pspc1	100	80.835	ENSAPEG00000015927	pspc1	100	80.266	Amphiprion_percula
ENSPMEG00000008322	pspc1	100	68.053	ENSATEG00000004878	pspc1	100	65.595	Anabas_testudineus
ENSPMEG00000008322	pspc1	75	66.667	ENSAPLG00000006246	PSPC1	99	67.482	Anas_platyrhynchos
ENSPMEG00000008322	pspc1	69	65.651	ENSAPLG00000003643	SFPQ	77	57.869	Anas_platyrhynchos
ENSPMEG00000008322	pspc1	68	58.127	ENSACAG00000013307	-	65	53.580	Anolis_carolinensis
ENSPMEG00000008322	pspc1	90	64.718	ENSACAG00000002093	PSPC1	92	65.469	Anolis_carolinensis
ENSPMEG00000008322	pspc1	87	67.230	ENSANAG00000000059	PSPC1	97	66.496	Aotus_nancymaae
ENSPMEG00000008322	pspc1	100	72.414	ENSACLG00000027220	pspc1	100	71.048	Astatotilapia_calliptera
ENSPMEG00000008322	pspc1	100	64.432	ENSAMXG00000036881	pspc1	100	64.991	Astyanax_mexicanus
ENSPMEG00000008322	pspc1	99	63.670	ENSBTAG00000003934	PSPC1	99	63.315	Bos_taurus
ENSPMEG00000008322	pspc1	87	67.230	ENSCJAG00000004554	PSPC1	95	65.613	Callithrix_jacchus
ENSPMEG00000008322	pspc1	87	67.653	ENSCAFG00020002009	PSPC1	97	69.270	Canis_lupus_dingo
ENSPMEG00000008322	pspc1	99	63.670	ENSCHIG00000016708	PSPC1	99	63.315	Capra_hircus
ENSPMEG00000008322	pspc1	76	60.808	ENSTSYG00000032882	PSPC1	90	60.000	Carlito_syrichta
ENSPMEG00000008322	pspc1	87	67.442	ENSCPOG00000000395	PSPC1	97	68.542	Cavia_porcellus
ENSPMEG00000008322	pspc1	87	67.230	ENSCCAG00000033498	PSPC1	95	65.810	Cebus_capucinus
ENSPMEG00000008322	pspc1	87	67.442	ENSCATG00000036434	PSPC1	96	73.407	Cercocebus_atys
ENSPMEG00000008322	pspc1	77	66.430	ENSCLAG00000005241	PSPC1	92	67.458	Chinchilla_lanigera
ENSPMEG00000008322	pspc1	92	61.538	ENSCHOG00000008913	PSPC1	92	63.286	Choloepus_hoffmanni
ENSPMEG00000008322	pspc1	87	66.809	ENSCPBG00000020859	PSPC1	88	67.728	Chrysemys_picta_bellii
ENSPMEG00000008322	pspc1	59	57.468	ENSCSAVG00000003533	-	53	60.432	Ciona_savignyi
ENSPMEG00000008322	pspc1	80	54.378	ENSCANG00000018948	PSPC1	87	79.026	Colobus_angolensis_palliatus
ENSPMEG00000008322	pspc1	92	65.923	ENSCGRG00001018368	Pspc1	92	67.004	Cricetulus_griseus_chok1gshd
ENSPMEG00000008322	pspc1	92	65.923	ENSCGRG00000011724	Pspc1	92	67.004	Cricetulus_griseus_crigri
ENSPMEG00000008322	pspc1	100	83.969	ENSCVAG00000007679	-	100	83.525	Cyprinodon_variegatus
ENSPMEG00000008322	pspc1	100	60.526	ENSDARG00000006621	pspc1	100	64.951	Danio_rerio
ENSPMEG00000008322	pspc1	87	67.925	ENSDNOG00000011078	PSPC1	95	65.175	Dasypus_novemcinctus
ENSPMEG00000008322	pspc1	96	61.923	ENSDORG00000016050	Pspc1	92	64.200	Dipodomys_ordii
ENSPMEG00000008322	pspc1	53	75.248	ENSETEG00000000502	-	60	75.248	Echinops_telfairi
ENSPMEG00000008322	pspc1	58	45.511	ENSEBUG00000010133	pspc1	76	48.276	Eptatretus_burgeri
ENSPMEG00000008322	pspc1	91	55.227	ENSEBUG00000003964	-	72	61.538	Eptatretus_burgeri
ENSPMEG00000008322	pspc1	99	62.894	ENSEASG00005000119	PSPC1	92	71.277	Equus_asinus_asinus
ENSPMEG00000008322	pspc1	99	62.894	ENSECAG00000017286	PSPC1	92	71.277	Equus_caballus
ENSPMEG00000008322	pspc1	50	68.077	ENSEEUG00000011288	-	56	63.605	Erinaceus_europaeus
ENSPMEG00000008322	pspc1	100	66.117	ENSELUG00000003746	pspc1	100	66.117	Esox_lucius
ENSPMEG00000008322	pspc1	99	62.942	ENSFCAG00000027841	PSPC1	97	69.521	Felis_catus
ENSPMEG00000008322	pspc1	87	66.596	ENSFALG00000008750	PSPC1	92	65.392	Ficedula_albicollis
ENSPMEG00000008322	pspc1	91	66.463	ENSFDAG00000002617	PSPC1	94	67.551	Fukomys_damarensis
ENSPMEG00000008322	pspc1	100	62.167	ENSGMOG00000015074	pspc1	100	62.500	Gadus_morhua
ENSPMEG00000008322	pspc1	87	66.809	ENSGALG00000017142	PSPC1	90	66.736	Gallus_gallus
ENSPMEG00000008322	pspc1	76	95.190	ENSGAFG00000006327	pspc1	81	95.190	Gambusia_affinis
ENSPMEG00000008322	pspc1	100	74.038	ENSGACG00000014901	pspc1	99	77.654	Gasterosteus_aculeatus
ENSPMEG00000008322	pspc1	87	66.809	ENSGAGG00000019164	PSPC1	88	67.728	Gopherus_agassizii
ENSPMEG00000008322	pspc1	73	64.042	ENSGAGG00000017325	-	64	57.044	Gopherus_agassizii
ENSPMEG00000008322	pspc1	87	67.653	ENSGGOG00000003414	PSPC1	97	68.514	Gorilla_gorilla
ENSPMEG00000008322	pspc1	100	81.034	ENSHBUG00000001139	pspc1	100	81.418	Haplochromis_burtoni
ENSPMEG00000008322	pspc1	99	63.148	ENSHGLG00000018811	PSPC1	89	68.577	Heterocephalus_glaber_female
ENSPMEG00000008322	pspc1	59	75.244	ENSHGLG00100007962	PSPC1	93	75.738	Heterocephalus_glaber_male
ENSPMEG00000008322	pspc1	81	75.476	ENSHCOG00000013251	pspc1	99	70.264	Hippocampus_comes
ENSPMEG00000008322	pspc1	100	65.485	ENSIPUG00000013192	pspc1	100	66.045	Ictalurus_punctatus
ENSPMEG00000008322	pspc1	91	65.331	ENSSTOG00000026833	PSPC1	97	69.211	Ictidomys_tridecemlineatus
ENSPMEG00000008322	pspc1	87	67.442	ENSJJAG00000018334	Pspc1	92	66.397	Jaculus_jaculus
ENSPMEG00000008322	pspc1	100	62.308	ENSKMAG00000013525	-	98	75.410	Kryptolebias_marmoratus
ENSPMEG00000008322	pspc1	99	72.913	ENSLBEG00000004474	pspc1	100	72.171	Labrus_bergylta
ENSPMEG00000008322	pspc1	100	60.589	ENSLACG00000010762	PSPC1	100	61.667	Latimeria_chalumnae
ENSPMEG00000008322	pspc1	100	64.750	ENSLOCG00000010832	pspc1	99	65.363	Lepisosteus_oculatus
ENSPMEG00000008322	pspc1	92	66.194	ENSLAFG00000010968	PSPC1	92	67.206	Loxodonta_africana
ENSPMEG00000008322	pspc1	87	67.442	ENSMFAG00000032728	PSPC1	97	73.481	Macaca_fascicularis
ENSPMEG00000008322	pspc1	87	67.442	ENSMMUG00000020262	PSPC1	94	73.407	Macaca_mulatta
ENSPMEG00000008322	pspc1	87	67.442	ENSMNEG00000027401	PSPC1	90	69.545	Macaca_nemestrina
ENSPMEG00000008322	pspc1	75	67.153	ENSMLEG00000039043	PSPC1	99	66.667	Mandrillus_leucophaeus
ENSPMEG00000008322	pspc1	100	76.164	ENSMAMG00000004333	pspc1	100	75.791	Mastacembelus_armatus
ENSPMEG00000008322	pspc1	100	72.414	ENSMZEG00005005726	pspc1	100	71.048	Maylandia_zebra
ENSPMEG00000008322	pspc1	76	65.942	ENSMGAG00000015134	PSPC1	100	66.747	Meleagris_gallopavo
ENSPMEG00000008322	pspc1	88	61.064	ENSMAUG00000021067	Pspc1	99	58.996	Mesocricetus_auratus
ENSPMEG00000008322	pspc1	92	67.339	ENSMICG00000013970	PSPC1	97	68.434	Microcebus_murinus
ENSPMEG00000008322	pspc1	92	65.314	ENSMOCG00000006060	Pspc1	92	66.397	Microtus_ochrogaster
ENSPMEG00000008322	pspc1	82	71.429	ENSMMOG00000004352	pspc1	65	50.630	Mola_mola
ENSPMEG00000008322	pspc1	83	70.136	ENSMODG00000008029	PSPC1	71	68.410	Monodelphis_domestica
ENSPMEG00000008322	pspc1	100	79.691	ENSMALG00000008914	pspc1	100	79.691	Monopterus_albus
ENSPMEG00000008322	pspc1	92	65.517	MGP_CAROLIEiJ_G0019341	Pspc1	90	70.070	Mus_caroli
ENSPMEG00000008322	pspc1	92	65.720	ENSMUSG00000021938	Pspc1	90	70.070	Mus_musculus
ENSPMEG00000008322	pspc1	92	65.191	MGP_PahariEiJ_G0030359	Pspc1	90	70.070	Mus_pahari
ENSPMEG00000008322	pspc1	92	65.314	MGP_SPRETEiJ_G0020232	Pspc1	90	70.070	Mus_spretus
ENSPMEG00000008322	pspc1	87	67.653	ENSMPUG00000013347	PSPC1	99	63.586	Mustela_putorius_furo
ENSPMEG00000008322	pspc1	87	68.565	ENSMLUG00000017663	PSPC1	92	66.799	Myotis_lucifugus
ENSPMEG00000008322	pspc1	92	66.191	ENSNGAG00000011271	Pspc1	92	66.194	Nannospalax_galili
ENSPMEG00000008322	pspc1	76	76.010	ENSNBRG00000014059	pspc1	92	73.500	Neolamprologus_brichardi
ENSPMEG00000008322	pspc1	87	67.653	ENSNLEG00000001294	PSPC1	93	66.402	Nomascus_leucogenys
ENSPMEG00000008322	pspc1	87	60.805	ENSODEG00000019012	-	99	58.965	Octodon_degus
ENSPMEG00000008322	pspc1	87	59.236	ENSODEG00000007817	-	99	53.663	Octodon_degus
ENSPMEG00000008322	pspc1	100	80.688	ENSONIG00000012010	pspc1	99	80.688	Oreochromis_niloticus
ENSPMEG00000008322	pspc1	75	66.667	ENSOANG00000009017	-	100	67.726	Ornithorhynchus_anatinus
ENSPMEG00000008322	pspc1	91	52.642	ENSOANG00000011381	-	84	57.176	Ornithorhynchus_anatinus
ENSPMEG00000008322	pspc1	87	67.728	ENSOCUG00000006153	PSPC1	92	66.600	Oryctolagus_cuniculus
ENSPMEG00000008322	pspc1	100	77.413	ENSORLG00000004232	-	100	77.606	Oryzias_latipes
ENSPMEG00000008322	pspc1	100	78.185	ENSORLG00020000578	PSPC1	100	78.378	Oryzias_latipes_hni
ENSPMEG00000008322	pspc1	100	77.992	ENSORLG00015017480	pspc1	100	78.185	Oryzias_latipes_hsok
ENSPMEG00000008322	pspc1	87	67.865	ENSOGAG00000012643	PSPC1	92	67.276	Otolemur_garnettii
ENSPMEG00000008322	pspc1	86	67.941	ENSOARG00000014163	PSPC1	95	68.443	Ovis_aries
ENSPMEG00000008322	pspc1	87	61.522	ENSPPAG00000009836	PSPC1	92	77.204	Pan_paniscus
ENSPMEG00000008322	pspc1	99	62.942	ENSPPRG00000008833	PSPC1	99	63.586	Panthera_pardus
ENSPMEG00000008322	pspc1	84	62.198	ENSPTIG00000016917	PSPC1	90	63.576	Panthera_tigris_altaica
ENSPMEG00000008322	pspc1	83	69.161	ENSPTRG00000005677	PSPC1	97	68.514	Pan_troglodytes
ENSPMEG00000008322	pspc1	87	67.442	ENSPANG00000001992	PSPC1	96	73.481	Papio_anubis
ENSPMEG00000008322	pspc1	100	63.388	ENSPKIG00000003578	pspc1	100	64.804	Paramormyrops_kingsleyae
ENSPMEG00000008322	pspc1	87	66.170	ENSPSIG00000005168	PSPC1	88	66.454	Pelodiscus_sinensis
ENSPMEG00000008322	pspc1	69	72.423	ENSPMGG00000015135	pspc1	98	72.191	Periophthalmus_magnuspinnatus
ENSPMEG00000008322	pspc1	92	65.112	ENSPEMG00000015214	Pspc1	92	66.599	Peromyscus_maniculatus_bairdii
ENSPMEG00000008322	pspc1	58	43.137	ENSPMAG00000004618	pspc1	91	43.137	Petromyzon_marinus
ENSPMEG00000008322	pspc1	92	66.132	ENSPCIG00000017680	PSPC1	95	65.759	Phascolarctos_cinereus
ENSPMEG00000008322	pspc1	99	99.609	ENSPFOG00000003362	pspc1	100	99.609	Poecilia_formosa
ENSPMEG00000008322	pspc1	100	99.613	ENSPLAG00000011540	pspc1	100	99.613	Poecilia_latipinna
ENSPMEG00000008322	pspc1	62	60.000	ENSPLAG00000004407	-	59	54.204	Poecilia_latipinna
ENSPMEG00000008322	pspc1	100	98.453	ENSPREG00000007786	pspc1	100	98.453	Poecilia_reticulata
ENSPMEG00000008322	pspc1	87	67.230	ENSPPYG00000005186	PSPC1	96	66.170	Pongo_abelii
ENSPMEG00000008322	pspc1	93	62.800	ENSPCOG00000014364	PSPC1	88	66.594	Propithecus_coquereli
ENSPMEG00000008322	pspc1	87	67.516	ENSPVAG00000005036	PSPC1	93	65.606	Pteropus_vampyrus
ENSPMEG00000008322	pspc1	100	72.797	ENSPNYG00000008893	pspc1	100	71.429	Pundamilia_nyererei
ENSPMEG00000008322	pspc1	100	66.105	ENSPNAG00000016511	pspc1	100	67.041	Pygocentrus_nattereri
ENSPMEG00000008322	pspc1	92	65.112	ENSRNOG00000020782	Pspc1	90	69.838	Rattus_norvegicus
ENSPMEG00000008322	pspc1	93	64.950	ENSRBIG00000036057	PSPC1	97	73.130	Rhinopithecus_bieti
ENSPMEG00000008322	pspc1	92	65.200	ENSRROG00000036334	PSPC1	97	68.922	Rhinopithecus_roxellana
ENSPMEG00000008322	pspc1	78	58.042	ENSSBOG00000028172	PSPC1	86	79.026	Saimiri_boliviensis_boliviensis
ENSPMEG00000008322	pspc1	92	61.477	ENSSHAG00000004696	PSPC1	95	61.240	Sarcophilus_harrisii
ENSPMEG00000008322	pspc1	87	68.519	ENSSFOG00015001395	pspc1	99	70.464	Scleropages_formosus
ENSPMEG00000008322	pspc1	100	76.966	ENSSMAG00000001761	pspc1	100	76.217	Scophthalmus_maximus
ENSPMEG00000008322	pspc1	100	76.190	ENSSDUG00000010651	pspc1	100	76.740	Seriola_dumerili
ENSPMEG00000008322	pspc1	100	70.656	ENSSLDG00000004284	pspc1	100	71.128	Seriola_lalandi_dorsalis
ENSPMEG00000008322	pspc1	83	63.920	ENSSARG00000000888	PSPC1	99	59.032	Sorex_araneus
ENSPMEG00000008322	pspc1	86	52.328	ENSSPUG00000001136	-	63	50.000	Sphenodon_punctatus
ENSPMEG00000008322	pspc1	90	58.351	ENSSPUG00000008550	PSPC1	99	54.089	Sphenodon_punctatus
ENSPMEG00000008322	pspc1	100	79.104	ENSSPAG00000001921	pspc1	100	78.172	Stegastes_partitus
ENSPMEG00000008322	pspc1	87	67.653	ENSSSCG00000009569	PSPC1	98	69.211	Sus_scrofa
ENSPMEG00000008322	pspc1	87	66.596	ENSTGUG00000011295	PSPC1	99	67.516	Taeniopygia_guttata
ENSPMEG00000008322	pspc1	100	70.307	ENSTRUG00000011335	pspc1	100	69.732	Takifugu_rubripes
ENSPMEG00000008322	pspc1	100	71.567	ENSTNIG00000010358	pspc1	100	71.567	Tetraodon_nigroviridis
ENSPMEG00000008322	pspc1	87	59.402	ENSTBEG00000002361	PSPC1	97	55.792	Tupaia_belangeri
ENSPMEG00000008322	pspc1	99	62.430	ENSTTRG00000003343	PSPC1	99	63.315	Tursiops_truncatus
ENSPMEG00000008322	pspc1	62	73.899	ENSUAMG00000012309	PSPC1	98	69.492	Ursus_americanus
ENSPMEG00000008322	pspc1	93	65.149	ENSUMAG00000013993	PSPC1	97	72.853	Ursus_maritimus
ENSPMEG00000008322	pspc1	75	66.988	ENSVPAG00000010029	PSPC1	100	68.704	Vicugna_pacos
ENSPMEG00000008322	pspc1	87	67.653	ENSVVUG00000006414	PSPC1	99	69.270	Vulpes_vulpes
ENSPMEG00000008322	pspc1	76	96.203	ENSXCOG00000017438	pspc1	93	96.203	Xiphophorus_couchianus
ENSPMEG00000008322	pspc1	76	96.962	ENSXMAG00000007929	pspc1	93	96.962	Xiphophorus_maculatus