EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000008420 (Gene tree)
Gene ID: 106908050
Gene Symbol: polr1c
Alias: -
Full Name: DNA-directed RNA polymerases I and III subunit RPAC1-like
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 6669 bases
Position: chrKQ553679.1:62846-69514
Accession: 106908050
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000006852	RNA_pol_A_bac	PF01000.26	3e-32	1	1
ENSPMEP00000006835	RNA_pol_A_bac	PF01000.26	2.2e-28	1	1
ENSPMEP00000006835	RNA_pol_L	PF01193.24	1e-22	1	1
ENSPMEP00000006852	RNA_pol_L	PF01193.24	1.4e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000005130	-	894	-	ENSPMEP00000006835	297 (aa)	-	-
ENSPMET00000005109	-	1558	XM_014973997	ENSPMEP00000006852	351 (aa)	XP_014829483	UPI000443A632

Gene Model

Click here to download ENSPMEG00000008420's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000008420's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000008420	polr1c	100	100.000	ENSPMEG00000011877	-	100	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000008420	polr1c	100	72.650	ENSG00000171453	POLR1C	100	73.387	Homo_sapiens
ENSPMEG00000008420	polr1c	100	87.179	ENSAPOG00000024356	polr1c	100	87.179	Acanthochromis_polyacanthus
ENSPMEG00000008420	polr1c	99	72.779	ENSAMEG00000012205	POLR1C	99	72.493	Ailuropoda_melanoleuca
ENSPMEG00000008420	polr1c	94	78.550	ENSACIG00000016268	polr1c	91	78.550	Amphilophus_citrinellus
ENSPMEG00000008420	polr1c	100	86.610	ENSAOCG00000011687	polr1c	97	86.610	Amphiprion_ocellaris
ENSPMEG00000008420	polr1c	100	87.464	ENSAPEG00000002433	polr1c	100	87.464	Amphiprion_percula
ENSPMEG00000008420	polr1c	99	90.831	ENSATEG00000005985	polr1c	99	90.831	Anabas_testudineus
ENSPMEG00000008420	polr1c	87	71.711	ENSAPLG00000002908	POLR1C	100	71.382	Anas_platyrhynchos
ENSPMEG00000008420	polr1c	90	73.968	ENSACAG00000009764	POLR1C	89	73.651	Anolis_carolinensis
ENSPMEG00000008420	polr1c	100	72.934	ENSANAG00000025805	POLR1C	100	72.391	Aotus_nancymaae
ENSPMEG00000008420	polr1c	100	90.028	ENSACLG00000006573	polr1c	100	90.028	Astatotilapia_calliptera
ENSPMEG00000008420	polr1c	56	30.102	ENSACLG00000004854	polr2c	78	30.102	Astatotilapia_calliptera
ENSPMEG00000008420	polr1c	100	80.808	ENSAMXG00000012062	polr1c	100	80.808	Astyanax_mexicanus
ENSPMEG00000008420	polr1c	100	72.934	ENSBTAG00000018969	POLR1C	100	72.934	Bos_taurus
ENSPMEG00000008420	polr1c	92	45.858	WBGene00019275	rpac-40	92	45.266	Caenorhabditis_elegans
ENSPMEG00000008420	polr1c	100	72.080	ENSCJAG00000005594	POLR1C	100	71.795	Callithrix_jacchus
ENSPMEG00000008420	polr1c	100	72.365	ENSCAFG00000001872	POLR1C	100	72.080	Canis_familiaris
ENSPMEG00000008420	polr1c	60	31.336	ENSCAFG00020007660	POLR2C	60	31.336	Canis_lupus_dingo
ENSPMEG00000008420	polr1c	100	72.365	ENSCAFG00020012018	POLR1C	100	72.080	Canis_lupus_dingo
ENSPMEG00000008420	polr1c	100	72.934	ENSCHIG00000004352	POLR1C	100	72.650	Capra_hircus
ENSPMEG00000008420	polr1c	100	72.934	ENSTSYG00000011921	POLR1C	100	72.650	Carlito_syrichta
ENSPMEG00000008420	polr1c	86	74.257	ENSCAPG00000015364	POLR1C	88	73.927	Cavia_aperea
ENSPMEG00000008420	polr1c	100	73.789	ENSCPOG00000038098	POLR1C	100	73.504	Cavia_porcellus
ENSPMEG00000008420	polr1c	100	72.650	ENSCCAG00000020169	POLR1C	100	72.365	Cebus_capucinus
ENSPMEG00000008420	polr1c	100	72.365	ENSCATG00000044045	POLR1C	100	72.365	Cercocebus_atys
ENSPMEG00000008420	polr1c	60	31.336	ENSCLAG00000013676	POLR2C	52	31.336	Chinchilla_lanigera
ENSPMEG00000008420	polr1c	100	74.074	ENSCLAG00000009266	POLR1C	100	73.789	Chinchilla_lanigera
ENSPMEG00000008420	polr1c	100	71.510	ENSCSAG00000011913	POLR1C	100	71.510	Chlorocebus_sabaeus
ENSPMEG00000008420	polr1c	60	68.868	ENSCHOG00000006601	POLR1C	100	68.868	Choloepus_hoffmanni
ENSPMEG00000008420	polr1c	99	75.072	ENSCPBG00000025203	POLR1C	99	74.785	Chrysemys_picta_bellii
ENSPMEG00000008420	polr1c	97	54.386	ENSCING00000003563	-	97	54.386	Ciona_intestinalis
ENSPMEG00000008420	polr1c	100	72.365	ENSCANG00000043167	POLR1C	100	72.080	Colobus_angolensis_palliatus
ENSPMEG00000008420	polr1c	100	72.080	ENSCGRG00001017533	Polr1c	100	71.795	Cricetulus_griseus_chok1gshd
ENSPMEG00000008420	polr1c	86	72.277	ENSCGRG00000013225	Polr1c	100	71.947	Cricetulus_griseus_crigri
ENSPMEG00000008420	polr1c	100	84.330	ENSCSEG00000018097	polr1c	100	84.330	Cynoglossus_semilaevis
ENSPMEG00000008420	polr1c	60	94.340	ENSCVAG00000005684	polr1c	85	94.340	Cyprinodon_variegatus
ENSPMEG00000008420	polr1c	100	80.057	ENSDARG00000039400	polr1c	96	79.772	Danio_rerio
ENSPMEG00000008420	polr1c	100	72.080	ENSDNOG00000042693	POLR1C	100	71.795	Dasypus_novemcinctus
ENSPMEG00000008420	polr1c	100	72.650	ENSDORG00000000429	Polr1c	100	72.365	Dipodomys_ordii
ENSPMEG00000008420	polr1c	90	51.104	FBgn0031657	CG3756	93	50.789	Drosophila_melanogaster
ENSPMEG00000008420	polr1c	99	68.571	ENSETEG00000010807	POLR1C	99	68.571	Echinops_telfairi
ENSPMEG00000008420	polr1c	97	67.059	ENSEBUG00000013725	polr1c	98	66.279	Eptatretus_burgeri
ENSPMEG00000008420	polr1c	100	72.650	ENSEASG00005003338	POLR1C	100	72.365	Equus_asinus_asinus
ENSPMEG00000008420	polr1c	100	72.650	ENSECAG00000023516	POLR1C	100	72.391	Equus_caballus
ENSPMEG00000008420	polr1c	99	73.352	ENSEEUG00000005471	POLR1C	99	73.066	Erinaceus_europaeus
ENSPMEG00000008420	polr1c	100	80.135	ENSELUG00000013027	polr1c	100	80.135	Esox_lucius
ENSPMEG00000008420	polr1c	100	72.650	ENSFCAG00000009735	POLR1C	100	72.391	Felis_catus
ENSPMEG00000008420	polr1c	93	71.865	ENSFALG00000012111	POLR1C	100	71.560	Ficedula_albicollis
ENSPMEG00000008420	polr1c	100	73.789	ENSFDAG00000008428	POLR1C	100	73.504	Fukomys_damarensis
ENSPMEG00000008420	polr1c	100	95.286	ENSFHEG00000000262	polr1c	100	95.286	Fundulus_heteroclitus
ENSPMEG00000008420	polr1c	57	93.605	ENSFHEG00000013867	-	84	96.512	Fundulus_heteroclitus
ENSPMEG00000008420	polr1c	93	81.098	ENSGMOG00000013878	polr1c	100	80.488	Gadus_morhua
ENSPMEG00000008420	polr1c	100	72.934	ENSGALG00000010349	POLR1C	100	72.650	Gallus_gallus
ENSPMEG00000008420	polr1c	100	98.006	ENSGAFG00000010153	polr1c	100	98.006	Gambusia_affinis
ENSPMEG00000008420	polr1c	100	85.185	ENSGACG00000002453	polr1c	100	85.185	Gasterosteus_aculeatus
ENSPMEG00000008420	polr1c	99	74.566	ENSGAGG00000010640	POLR1C	99	74.277	Gopherus_agassizii
ENSPMEG00000008420	polr1c	100	72.650	ENSGGOG00000010903	POLR1C	100	72.365	Gorilla_gorilla
ENSPMEG00000008420	polr1c	100	79.487	ENSHBUG00000017816	polr1c	100	78.917	Haplochromis_burtoni
ENSPMEG00000008420	polr1c	56	30.102	ENSHBUG00000023040	polr2c	78	30.102	Haplochromis_burtoni
ENSPMEG00000008420	polr1c	100	72.934	ENSHGLG00000019441	POLR1C	100	72.650	Heterocephalus_glaber_female
ENSPMEG00000008420	polr1c	100	73.219	ENSHGLG00100005970	POLR1C	100	72.934	Heterocephalus_glaber_male
ENSPMEG00000008420	polr1c	99	81.089	ENSHCOG00000002179	polr1c	99	81.089	Hippocampus_comes
ENSPMEG00000008420	polr1c	99	80.802	ENSIPUG00000024464	polr1c	99	80.516	Ictalurus_punctatus
ENSPMEG00000008420	polr1c	100	72.934	ENSSTOG00000010631	POLR1C	100	72.650	Ictidomys_tridecemlineatus
ENSPMEG00000008420	polr1c	60	31.336	ENSSTOG00000015150	-	50	31.336	Ictidomys_tridecemlineatus
ENSPMEG00000008420	polr1c	100	72.934	ENSJJAG00000023110	Polr1c	100	72.650	Jaculus_jaculus
ENSPMEG00000008420	polr1c	100	92.023	ENSKMAG00000014305	polr1c	100	90.909	Kryptolebias_marmoratus
ENSPMEG00000008420	polr1c	100	88.319	ENSLBEG00000014925	polr1c	100	88.319	Labrus_bergylta
ENSPMEG00000008420	polr1c	95	59.524	ENSLACG00000012567	POLR1C	98	59.226	Latimeria_chalumnae
ENSPMEG00000008420	polr1c	100	77.778	ENSLOCG00000016710	polr1c	96	77.493	Lepisosteus_oculatus
ENSPMEG00000008420	polr1c	60	31.336	ENSLAFG00000027230	POLR2C	74	31.336	Loxodonta_africana
ENSPMEG00000008420	polr1c	87	72.787	ENSLAFG00000026248	POLR1C	100	72.787	Loxodonta_africana
ENSPMEG00000008420	polr1c	100	72.080	ENSMFAG00000046295	POLR1C	100	72.080	Macaca_fascicularis
ENSPMEG00000008420	polr1c	60	31.336	ENSMFAG00000016861	POLR2C	60	30.939	Macaca_fascicularis
ENSPMEG00000008420	polr1c	60	31.336	ENSMMUG00000020474	POLR2C	60	30.939	Macaca_mulatta
ENSPMEG00000008420	polr1c	100	72.080	ENSMMUG00000015192	POLR1C	100	72.080	Macaca_mulatta
ENSPMEG00000008420	polr1c	100	72.080	ENSMNEG00000028073	POLR1C	100	72.080	Macaca_nemestrina
ENSPMEG00000008420	polr1c	100	72.080	ENSMLEG00000034818	POLR1C	100	72.080	Mandrillus_leucophaeus
ENSPMEG00000008420	polr1c	100	89.459	ENSMAMG00000008700	polr1c	100	89.459	Mastacembelus_armatus
ENSPMEG00000008420	polr1c	100	89.744	ENSMZEG00005018545	polr1c	100	89.744	Maylandia_zebra
ENSPMEG00000008420	polr1c	84	68.475	ENSMGAG00000011020	POLR1C	100	68.136	Meleagris_gallopavo
ENSPMEG00000008420	polr1c	100	72.080	ENSMAUG00000014329	Polr1c	100	71.795	Mesocricetus_auratus
ENSPMEG00000008420	polr1c	100	71.717	ENSMICG00000005027	POLR1C	100	71.717	Microcebus_murinus
ENSPMEG00000008420	polr1c	60	31.628	ENSMOCG00000013652	Polr2c	73	31.628	Microtus_ochrogaster
ENSPMEG00000008420	polr1c	100	72.650	ENSMOCG00000017549	Polr1c	100	72.365	Microtus_ochrogaster
ENSPMEG00000008420	polr1c	100	82.492	ENSMMOG00000005380	polr1c	100	82.492	Mola_mola
ENSPMEG00000008420	polr1c	84	73.559	ENSMODG00000018964	POLR1C	100	73.559	Monodelphis_domestica
ENSPMEG00000008420	polr1c	100	87.542	ENSMALG00000011711	polr1c	100	87.542	Monopterus_albus
ENSPMEG00000008420	polr1c	100	63.818	MGP_CAROLIEiJ_G0021662	Polr1c	100	70.455	Mus_caroli
ENSPMEG00000008420	polr1c	100	72.365	ENSMUSG00000067148	Polr1c	99	75.728	Mus_musculus
ENSPMEG00000008420	polr1c	100	72.934	MGP_PahariEiJ_G0020654	Polr1c	99	76.699	Mus_pahari
ENSPMEG00000008420	polr1c	100	72.365	MGP_SPRETEiJ_G0022574	Polr1c	99	75.728	Mus_spretus
ENSPMEG00000008420	polr1c	100	72.650	ENSMPUG00000012916	POLR1C	91	72.365	Mustela_putorius_furo
ENSPMEG00000008420	polr1c	100	72.934	ENSMLUG00000017751	POLR1C	99	72.650	Myotis_lucifugus
ENSPMEG00000008420	polr1c	100	72.650	ENSNGAG00000023487	Polr1c	100	72.365	Nannospalax_galili
ENSPMEG00000008420	polr1c	100	89.744	ENSNBRG00000018742	polr1c	100	89.744	Neolamprologus_brichardi
ENSPMEG00000008420	polr1c	100	72.365	ENSNLEG00000004035	POLR1C	100	72.080	Nomascus_leucogenys
ENSPMEG00000008420	polr1c	99	62.609	ENSMEUG00000006778	POLR1C	99	62.609	Notamacropus_eugenii
ENSPMEG00000008420	polr1c	78	72.894	ENSOPRG00000000145	POLR1C	100	72.894	Ochotona_princeps
ENSPMEG00000008420	polr1c	62	70.320	ENSODEG00000017109	-	97	71.226	Octodon_degus
ENSPMEG00000008420	polr1c	100	73.789	ENSODEG00000015831	-	100	73.504	Octodon_degus
ENSPMEG00000008420	polr1c	100	90.313	ENSONIG00000013133	polr1c	98	90.313	Oreochromis_niloticus
ENSPMEG00000008420	polr1c	99	70.487	ENSOANG00000003043	POLR1C	99	70.201	Ornithorhynchus_anatinus
ENSPMEG00000008420	polr1c	100	71.795	ENSOCUG00000005504	POLR1C	99	71.510	Oryctolagus_cuniculus
ENSPMEG00000008420	polr1c	99	86.455	ENSORLG00000019743	polr1c	99	86.455	Oryzias_latipes
ENSPMEG00000008420	polr1c	99	87.032	ENSORLG00020006489	POLR1C	99	87.032	Oryzias_latipes_hni
ENSPMEG00000008420	polr1c	77	67.391	ENSORLG00020005555	polr1c	81	67.647	Oryzias_latipes_hni
ENSPMEG00000008420	polr1c	99	86.167	ENSORLG00015013322	polr1c	99	86.167	Oryzias_latipes_hsok
ENSPMEG00000008420	polr1c	99	86.705	ENSOMEG00000016527	polr1c	99	86.705	Oryzias_melastigma
ENSPMEG00000008420	polr1c	99	72.206	ENSOGAG00000016318	POLR1C	99	71.633	Otolemur_garnettii
ENSPMEG00000008420	polr1c	100	72.650	ENSOARG00000007503	POLR1C	100	72.650	Ovis_aries
ENSPMEG00000008420	polr1c	50	30.939	ENSPPAG00000042822	POLR2C	62	31.034	Pan_paniscus
ENSPMEG00000008420	polr1c	100	72.650	ENSPPAG00000043678	POLR1C	100	72.365	Pan_paniscus
ENSPMEG00000008420	polr1c	100	72.934	ENSPPRG00000009760	POLR1C	100	72.727	Panthera_pardus
ENSPMEG00000008420	polr1c	100	72.934	ENSPTIG00000014813	POLR1C	100	72.727	Panthera_tigris_altaica
ENSPMEG00000008420	polr1c	60	31.336	ENSPTRG00000008157	POLR2C	60	30.939	Pan_troglodytes
ENSPMEG00000008420	polr1c	100	72.650	ENSPTRG00000018202	POLR1C	100	72.365	Pan_troglodytes
ENSPMEG00000008420	polr1c	100	72.365	ENSPANG00000009025	POLR1C	100	71.717	Papio_anubis
ENSPMEG00000008420	polr1c	100	78.632	ENSPKIG00000009858	polr1c	100	78.348	Paramormyrops_kingsleyae
ENSPMEG00000008420	polr1c	99	74.212	ENSPSIG00000012580	POLR1C	94	73.926	Pelodiscus_sinensis
ENSPMEG00000008420	polr1c	100	84.175	ENSPMGG00000012121	polr1c	100	84.175	Periophthalmus_magnuspinnatus
ENSPMEG00000008420	polr1c	100	72.080	ENSPEMG00000006970	Polr1c	100	71.795	Peromyscus_maniculatus_bairdii
ENSPMEG00000008420	polr1c	99	70.000	ENSPMAG00000005560	polr1c	99	69.714	Petromyzon_marinus
ENSPMEG00000008420	polr1c	59	34.239	ENSPMAG00000004827	polr2c	81	34.653	Petromyzon_marinus
ENSPMEG00000008420	polr1c	99	74.237	ENSPCIG00000028137	POLR1C	99	74.237	Phascolarctos_cinereus
ENSPMEG00000008420	polr1c	100	100.000	ENSPFOG00000014342	POLR1C	100	100.000	Poecilia_formosa
ENSPMEG00000008420	polr1c	100	100.000	ENSPFOG00000014357	polr1c	98	100.000	Poecilia_formosa
ENSPMEG00000008420	polr1c	63	100.000	ENSPLAG00000004111	polr1c	93	100.000	Poecilia_latipinna
ENSPMEG00000008420	polr1c	100	97.721	ENSPREG00000007985	polr1c	100	97.721	Poecilia_reticulata
ENSPMEG00000008420	polr1c	100	72.365	ENSPPYG00000016645	POLR1C	100	72.080	Pongo_abelii
ENSPMEG00000008420	polr1c	100	71.225	ENSPCOG00000024628	POLR1C	100	71.044	Propithecus_coquereli
ENSPMEG00000008420	polr1c	100	67.521	ENSPVAG00000005689	POLR1C	100	67.521	Pteropus_vampyrus
ENSPMEG00000008420	polr1c	100	89.744	ENSPNYG00000003620	polr1c	100	89.744	Pundamilia_nyererei
ENSPMEG00000008420	polr1c	100	82.051	ENSPNAG00000008443	polr1c	100	81.766	Pygocentrus_nattereri
ENSPMEG00000008420	polr1c	100	72.080	ENSRNOG00000019079	Polr1c	100	71.795	Rattus_norvegicus
ENSPMEG00000008420	polr1c	100	72.650	ENSRBIG00000007155	POLR1C	100	72.391	Rhinopithecus_bieti
ENSPMEG00000008420	polr1c	100	72.365	ENSRROG00000000257	POLR1C	100	72.080	Rhinopithecus_roxellana
ENSPMEG00000008420	polr1c	92	47.205	YPR110C	RPC40	95	47.205	Saccharomyces_cerevisiae
ENSPMEG00000008420	polr1c	100	72.650	ENSSBOG00000025735	POLR1C	99	73.077	Saimiri_boliviensis_boliviensis
ENSPMEG00000008420	polr1c	99	66.762	ENSSHAG00000014456	POLR1C	99	66.762	Sarcophilus_harrisii
ENSPMEG00000008420	polr1c	100	80.627	ENSSFOG00015019860	polr1c	100	80.342	Scleropages_formosus
ENSPMEG00000008420	polr1c	100	87.749	ENSSMAG00000018865	polr1c	100	87.749	Scophthalmus_maximus
ENSPMEG00000008420	polr1c	100	90.313	ENSSDUG00000015745	polr1c	100	88.552	Seriola_dumerili
ENSPMEG00000008420	polr1c	100	90.028	ENSSLDG00000018285	polr1c	100	88.215	Seriola_lalandi_dorsalis
ENSPMEG00000008420	polr1c	99	72.832	ENSSPUG00000011822	POLR1C	99	72.543	Sphenodon_punctatus
ENSPMEG00000008420	polr1c	100	88.319	ENSSPAG00000022369	polr1c	100	88.319	Stegastes_partitus
ENSPMEG00000008420	polr1c	100	72.365	ENSSSCG00000028007	POLR1C	99	72.080	Sus_scrofa
ENSPMEG00000008420	polr1c	97	72.271	ENSTGUG00000009159	POLR1C	99	71.976	Taeniopygia_guttata
ENSPMEG00000008420	polr1c	100	84.330	ENSTRUG00000006264	polr1c	100	84.330	Takifugu_rubripes
ENSPMEG00000008420	polr1c	51	71.910	ENSTBEG00000002254	POLR1C	100	71.910	Tupaia_belangeri
ENSPMEG00000008420	polr1c	76	69.663	ENSTTRG00000006344	POLR1C	76	69.288	Tursiops_truncatus
ENSPMEG00000008420	polr1c	100	72.934	ENSUAMG00000025602	POLR1C	100	72.650	Ursus_americanus
ENSPMEG00000008420	polr1c	100	72.934	ENSUMAG00000005938	POLR1C	100	72.650	Ursus_maritimus
ENSPMEG00000008420	polr1c	100	72.391	ENSVVUG00000028922	POLR1C	100	72.391	Vulpes_vulpes
ENSPMEG00000008420	polr1c	100	67.705	ENSXETG00000010882	polr1c	100	67.045	Xenopus_tropicalis
ENSPMEG00000008420	polr1c	100	97.436	ENSXCOG00000014185	polr1c	100	97.436	Xiphophorus_couchianus
ENSPMEG00000008420	polr1c	100	98.291	ENSXMAG00000015076	polr1c	100	98.291	Xiphophorus_maculatus