EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000009064 (Gene tree)
Gene ID: 106934371
Gene Symbol: trub1
Alias: -
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 10104 bases
Position: chrKQ552742.1:108873-118976
Accession: 106934371
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000025829	TruB_N	PF01509.18	3.2e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000004123	-	3171	XM_015014215	ENSPMEP00000025829	277 (aa)	XP_014869701	UPI00072EDA53

Gene Model

Click here to download ENSPMEG00000009064's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000009064's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000009064	trub1	71	33.500	ENSPMEG00000012913	trub2	59	33.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000009064	trub1	88	66.122	ENSG00000165832	TRUB1	70	66.122	Homo_sapiens
ENSPMEG00000009064	trub1	88	85.246	ENSAPOG00000020565	trub1	99	80.586	Acanthochromis_polyacanthus
ENSPMEG00000009064	trub1	88	65.992	ENSAMEG00000014931	TRUB1	70	65.992	Ailuropoda_melanoleuca
ENSPMEG00000009064	trub1	99	75.725	ENSACIG00000003060	trub1	92	75.725	Amphilophus_citrinellus
ENSPMEG00000009064	trub1	88	85.246	ENSAOCG00000017188	trub1	99	80.586	Amphiprion_ocellaris
ENSPMEG00000009064	trub1	94	83.525	ENSAPEG00000015209	trub1	99	80.586	Amphiprion_percula
ENSPMEG00000009064	trub1	89	84.959	ENSATEG00000023291	trub1	88	84.959	Anabas_testudineus
ENSPMEG00000009064	trub1	88	67.623	ENSAPLG00000006808	TRUB1	87	67.623	Anas_platyrhynchos
ENSPMEG00000009064	trub1	88	64.082	ENSACAG00000009282	TRUB1	88	64.082	Anolis_carolinensis
ENSPMEG00000009064	trub1	88	66.122	ENSANAG00000022870	TRUB1	70	66.122	Aotus_nancymaae
ENSPMEG00000009064	trub1	100	80.576	ENSACLG00000000823	trub1	100	80.576	Astatotilapia_calliptera
ENSPMEG00000009064	trub1	90	77.510	ENSAMXG00000015845	trub1	83	77.510	Astyanax_mexicanus
ENSPMEG00000009064	trub1	88	67.347	ENSBTAG00000012955	TRUB1	70	67.347	Bos_taurus
ENSPMEG00000009064	trub1	88	66.122	ENSCJAG00000047815	TRUB1	70	66.122	Callithrix_jacchus
ENSPMEG00000009064	trub1	88	66.531	ENSCAFG00000011688	TRUB1	76	63.670	Canis_familiaris
ENSPMEG00000009064	trub1	88	66.531	ENSCAFG00020013237	TRUB1	76	63.670	Canis_lupus_dingo
ENSPMEG00000009064	trub1	88	66.531	ENSCHIG00000020884	TRUB1	73	66.531	Capra_hircus
ENSPMEG00000009064	trub1	88	64.898	ENSTSYG00000000446	TRUB1	70	64.898	Carlito_syrichta
ENSPMEG00000009064	trub1	76	59.242	ENSCAPG00000017088	TRUB1	82	59.242	Cavia_aperea
ENSPMEG00000009064	trub1	66	65.574	ENSCPOG00000040236	-	75	65.574	Cavia_porcellus
ENSPMEG00000009064	trub1	67	64.516	ENSCPOG00000030129	-	72	64.516	Cavia_porcellus
ENSPMEG00000009064	trub1	88	66.122	ENSCCAG00000028842	TRUB1	70	66.122	Cebus_capucinus
ENSPMEG00000009064	trub1	88	66.122	ENSCATG00000033431	TRUB1	70	66.122	Cercocebus_atys
ENSPMEG00000009064	trub1	66	64.481	ENSCLAG00000008664	TRUB1	75	64.481	Chinchilla_lanigera
ENSPMEG00000009064	trub1	88	66.122	ENSCSAG00000004891	TRUB1	70	66.122	Chlorocebus_sabaeus
ENSPMEG00000009064	trub1	88	59.259	ENSCHOG00000011931	TRUB1	70	59.259	Choloepus_hoffmanni
ENSPMEG00000009064	trub1	94	67.176	ENSCPBG00000003051	TRUB1	90	67.176	Chrysemys_picta_bellii
ENSPMEG00000009064	trub1	88	66.122	ENSCANG00000029445	TRUB1	70	66.122	Colobus_angolensis_palliatus
ENSPMEG00000009064	trub1	77	66.509	ENSCGRG00001016772	-	71	66.355	Cricetulus_griseus_chok1gshd
ENSPMEG00000009064	trub1	86	57.563	ENSCGRG00001010322	-	66	57.143	Cricetulus_griseus_chok1gshd
ENSPMEG00000009064	trub1	86	65.126	ENSCGRG00000010806	Trub1	81	62.264	Cricetulus_griseus_crigri
ENSPMEG00000009064	trub1	92	78.346	ENSCSEG00000011261	trub1	82	78.656	Cynoglossus_semilaevis
ENSPMEG00000009064	trub1	92	85.490	ENSCVAG00000008791	trub1	78	85.490	Cyprinodon_variegatus
ENSPMEG00000009064	trub1	96	70.149	ENSDARG00000053805	trub1	99	82.353	Danio_rerio
ENSPMEG00000009064	trub1	94	60.755	ENSDNOG00000001069	TRUB1	76	60.755	Dasypus_novemcinctus
ENSPMEG00000009064	trub1	86	65.546	ENSDORG00000010431	Trub1	71	65.306	Dipodomys_ordii
ENSPMEG00000009064	trub1	65	64.234	ENSETEG00000009183	TRUB1	50	64.234	Echinops_telfairi
ENSPMEG00000009064	trub1	88	65.714	ENSEASG00005014739	TRUB1	70	65.714	Equus_asinus_asinus
ENSPMEG00000009064	trub1	88	65.714	ENSECAG00000007177	TRUB1	70	65.714	Equus_caballus
ENSPMEG00000009064	trub1	88	57.959	ENSEEUG00000013993	TRUB1	72	56.923	Erinaceus_europaeus
ENSPMEG00000009064	trub1	94	77.778	ENSELUG00000000502	trub1	91	77.778	Esox_lucius
ENSPMEG00000009064	trub1	88	66.531	ENSFCAG00000031927	TRUB1	70	66.531	Felis_catus
ENSPMEG00000009064	trub1	78	67.442	ENSFALG00000002232	TRUB1	83	67.442	Ficedula_albicollis
ENSPMEG00000009064	trub1	66	66.120	ENSFDAG00000008140	TRUB1	75	66.120	Fukomys_damarensis
ENSPMEG00000009064	trub1	98	86.447	ENSFHEG00000004016	trub1	94	86.447	Fundulus_heteroclitus
ENSPMEG00000009064	trub1	89	65.587	ENSGALG00000009091	TRUB1	87	65.587	Gallus_gallus
ENSPMEG00000009064	trub1	92	94.942	ENSGAFG00000009193	trub1	90	94.942	Gambusia_affinis
ENSPMEG00000009064	trub1	71	85.714	ENSGACG00000015387	trub1	96	85.714	Gasterosteus_aculeatus
ENSPMEG00000009064	trub1	88	69.796	ENSGAGG00000009758	TRUB1	70	69.796	Gopherus_agassizii
ENSPMEG00000009064	trub1	88	66.122	ENSGGOG00000004583	TRUB1	70	66.122	Gorilla_gorilla
ENSPMEG00000009064	trub1	100	80.216	ENSHBUG00000016787	trub1	100	80.216	Haplochromis_burtoni
ENSPMEG00000009064	trub1	88	64.490	ENSHGLG00000015314	TRUB1	70	64.490	Heterocephalus_glaber_female
ENSPMEG00000009064	trub1	66	65.574	ENSHGLG00100009183	TRUB1	77	65.574	Heterocephalus_glaber_male
ENSPMEG00000009064	trub1	100	78.777	ENSHCOG00000017877	trub1	100	78.777	Hippocampus_comes
ENSPMEG00000009064	trub1	89	78.138	ENSIPUG00000017559	trub1	87	78.138	Ictalurus_punctatus
ENSPMEG00000009064	trub1	85	68.085	ENSSTOG00000003641	TRUB1	71	68.085	Ictidomys_tridecemlineatus
ENSPMEG00000009064	trub1	88	65.306	ENSJJAG00000011800	Trub1	72	65.306	Jaculus_jaculus
ENSPMEG00000009064	trub1	100	80.216	ENSKMAG00000006232	trub1	100	80.216	Kryptolebias_marmoratus
ENSPMEG00000009064	trub1	98	80.147	ENSLBEG00000026722	trub1	95	80.147	Labrus_bergylta
ENSPMEG00000009064	trub1	93	72.093	ENSLACG00000014885	TRUB1	86	72.093	Latimeria_chalumnae
ENSPMEG00000009064	trub1	99	71.168	ENSLOCG00000012979	trub1	93	71.168	Lepisosteus_oculatus
ENSPMEG00000009064	trub1	90	65.873	ENSLAFG00000015452	TRUB1	76	63.774	Loxodonta_africana
ENSPMEG00000009064	trub1	88	66.122	ENSMFAG00000031767	TRUB1	70	66.122	Macaca_fascicularis
ENSPMEG00000009064	trub1	88	66.122	ENSMMUG00000001902	TRUB1	70	66.122	Macaca_mulatta
ENSPMEG00000009064	trub1	88	60.408	ENSMNEG00000044646	TRUB1	69	60.408	Macaca_nemestrina
ENSPMEG00000009064	trub1	88	66.122	ENSMLEG00000042655	TRUB1	70	66.122	Mandrillus_leucophaeus
ENSPMEG00000009064	trub1	100	80.576	ENSMZEG00005024095	trub1	100	80.576	Maylandia_zebra
ENSPMEG00000009064	trub1	89	66.397	ENSMGAG00000011135	TRUB1	85	66.397	Meleagris_gallopavo
ENSPMEG00000009064	trub1	91	60.547	ENSMAUG00000011101	Trub1	77	60.456	Mesocricetus_auratus
ENSPMEG00000009064	trub1	88	65.714	ENSMICG00000016324	TRUB1	70	65.714	Microcebus_murinus
ENSPMEG00000009064	trub1	92	63.035	ENSMOCG00000017759	Trub1	80	62.879	Microtus_ochrogaster
ENSPMEG00000009064	trub1	88	67.213	ENSMODG00000009676	TRUB1	71	65.625	Monodelphis_domestica
ENSPMEG00000009064	trub1	88	66.129	MGP_CAROLIEiJ_G0023100	Trub1	76	67.380	Mus_caroli
ENSPMEG00000009064	trub1	88	65.323	ENSMUSG00000025086	Trub1	76	66.310	Mus_musculus
ENSPMEG00000009064	trub1	90	65.079	MGP_PahariEiJ_G0014588	Trub1	75	65.079	Mus_pahari
ENSPMEG00000009064	trub1	88	65.323	MGP_SPRETEiJ_G0024021	Trub1	76	66.310	Mus_spretus
ENSPMEG00000009064	trub1	88	66.531	ENSMPUG00000003556	TRUB1	70	66.531	Mustela_putorius_furo
ENSPMEG00000009064	trub1	88	65.306	ENSMLUG00000017686	TRUB1	72	65.306	Myotis_lucifugus
ENSPMEG00000009064	trub1	88	65.714	ENSNGAG00000018682	Trub1	70	65.714	Nannospalax_galili
ENSPMEG00000009064	trub1	92	83.137	ENSNBRG00000023393	trub1	91	83.137	Neolamprologus_brichardi
ENSPMEG00000009064	trub1	88	66.122	ENSNLEG00000016345	TRUB1	70	66.122	Nomascus_leucogenys
ENSPMEG00000009064	trub1	73	70.149	ENSMEUG00000006603	TRUB1	80	67.442	Notamacropus_eugenii
ENSPMEG00000009064	trub1	88	65.306	ENSOPRG00000009371	TRUB1	71	65.306	Ochotona_princeps
ENSPMEG00000009064	trub1	88	64.082	ENSODEG00000010854	TRUB1	70	64.082	Octodon_degus
ENSPMEG00000009064	trub1	97	81.041	ENSONIG00000007249	trub1	98	81.041	Oreochromis_niloticus
ENSPMEG00000009064	trub1	90	66.532	ENSOANG00000001556	TRUB1	87	64.394	Ornithorhynchus_anatinus
ENSPMEG00000009064	trub1	88	65.714	ENSOCUG00000009456	TRUB1	71	65.714	Oryctolagus_cuniculus
ENSPMEG00000009064	trub1	98	80.586	ENSORLG00000029719	trub1	98	80.586	Oryzias_latipes
ENSPMEG00000009064	trub1	98	80.220	ENSORLG00020016767	trub1	96	80.220	Oryzias_latipes_hni
ENSPMEG00000009064	trub1	98	79.487	ENSORLG00015014728	trub1	98	79.487	Oryzias_latipes_hsok
ENSPMEG00000009064	trub1	94	81.992	ENSOMEG00000014556	trub1	92	81.992	Oryzias_melastigma
ENSPMEG00000009064	trub1	88	66.122	ENSOGAG00000015895	TRUB1	70	66.122	Otolemur_garnettii
ENSPMEG00000009064	trub1	88	64.683	ENSOARG00000015591	TRUB1	77	61.765	Ovis_aries
ENSPMEG00000009064	trub1	88	66.122	ENSPPAG00000043645	TRUB1	70	66.122	Pan_paniscus
ENSPMEG00000009064	trub1	88	66.122	ENSPPRG00000007096	TRUB1	70	66.122	Panthera_pardus
ENSPMEG00000009064	trub1	88	66.122	ENSPTIG00000006378	TRUB1	70	66.122	Panthera_tigris_altaica
ENSPMEG00000009064	trub1	88	66.122	ENSPTRG00000002964	TRUB1	70	66.122	Pan_troglodytes
ENSPMEG00000009064	trub1	88	66.122	ENSPANG00000020712	TRUB1	70	66.122	Papio_anubis
ENSPMEG00000009064	trub1	62	77.778	ENSPKIG00000003852	trub1	74	77.778	Paramormyrops_kingsleyae
ENSPMEG00000009064	trub1	93	67.816	ENSPSIG00000012877	TRUB1	90	67.816	Pelodiscus_sinensis
ENSPMEG00000009064	trub1	96	75.655	ENSPMGG00000000075	trub1	94	75.655	Periophthalmus_magnuspinnatus
ENSPMEG00000009064	trub1	88	66.122	ENSPEMG00000011156	Trub1	72	66.122	Peromyscus_maniculatus_bairdii
ENSPMEG00000009064	trub1	88	67.213	ENSPCIG00000009729	TRUB1	70	65.116	Phascolarctos_cinereus
ENSPMEG00000009064	trub1	99	99.634	ENSPFOG00000009950	trub1	100	99.634	Poecilia_formosa
ENSPMEG00000009064	trub1	100	99.278	ENSPLAG00000013855	trub1	97	99.278	Poecilia_latipinna
ENSPMEG00000009064	trub1	100	97.112	ENSPREG00000003343	trub1	100	97.112	Poecilia_reticulata
ENSPMEG00000009064	trub1	88	65.714	ENSPPYG00000002676	TRUB1	70	65.714	Pongo_abelii
ENSPMEG00000009064	trub1	90	59.921	ENSPCAG00000008427	TRUB1	72	59.921	Procavia_capensis
ENSPMEG00000009064	trub1	88	60.000	ENSPCOG00000024360	TRUB1	68	60.000	Propithecus_coquereli
ENSPMEG00000009064	trub1	73	68.812	ENSPVAG00000007575	TRUB1	77	68.812	Pteropus_vampyrus
ENSPMEG00000009064	trub1	100	80.576	ENSPNYG00000018614	trub1	100	80.576	Pundamilia_nyererei
ENSPMEG00000009064	trub1	97	63.333	ENSPNAG00000006881	trub1	88	63.333	Pygocentrus_nattereri
ENSPMEG00000009064	trub1	90	64.286	ENSRNOG00000017321	Trub1	74	64.286	Rattus_norvegicus
ENSPMEG00000009064	trub1	88	57.085	ENSRBIG00000033423	TRUB1	68	57.085	Rhinopithecus_bieti
ENSPMEG00000009064	trub1	88	66.122	ENSRROG00000033902	TRUB1	70	66.122	Rhinopithecus_roxellana
ENSPMEG00000009064	trub1	88	66.122	ENSSBOG00000024237	TRUB1	70	66.122	Saimiri_boliviensis_boliviensis
ENSPMEG00000009064	trub1	77	68.372	ENSSHAG00000009346	TRUB1	72	68.372	Sarcophilus_harrisii
ENSPMEG00000009064	trub1	95	75.758	ENSSFOG00015022124	trub1	90	75.758	Scleropages_formosus
ENSPMEG00000009064	trub1	96	82.836	ENSSMAG00000001020	trub1	95	82.836	Scophthalmus_maximus
ENSPMEG00000009064	trub1	97	81.041	ENSSDUG00000016414	trub1	97	83.643	Seriola_dumerili
ENSPMEG00000009064	trub1	97	80.669	ENSSLDG00000015486	trub1	97	83.271	Seriola_lalandi_dorsalis
ENSPMEG00000009064	trub1	94	66.160	ENSSPUG00000001642	TRUB1	90	66.160	Sphenodon_punctatus
ENSPMEG00000009064	trub1	100	80.576	ENSSPAG00000001217	trub1	100	80.576	Stegastes_partitus
ENSPMEG00000009064	trub1	90	65.476	ENSSSCG00000010653	TRUB1	73	65.476	Sus_scrofa
ENSPMEG00000009064	trub1	88	67.213	ENSTGUG00000010971	TRUB1	91	65.098	Taeniopygia_guttata
ENSPMEG00000009064	trub1	76	57.346	ENSTBEG00000002880	TRUB1	83	57.346	Tupaia_belangeri
ENSPMEG00000009064	trub1	73	68.317	ENSTTRG00000005767	TRUB1	77	68.317	Tursiops_truncatus
ENSPMEG00000009064	trub1	88	66.531	ENSUAMG00000024876	TRUB1	70	66.531	Ursus_americanus
ENSPMEG00000009064	trub1	88	66.531	ENSUMAG00000002411	TRUB1	72	68.306	Ursus_maritimus
ENSPMEG00000009064	trub1	88	66.531	ENSVPAG00000005507	TRUB1	70	66.531	Vicugna_pacos
ENSPMEG00000009064	trub1	88	66.531	ENSVVUG00000010085	TRUB1	59	66.531	Vulpes_vulpes
ENSPMEG00000009064	trub1	88	68.163	ENSXETG00000023828	trub1	88	68.163	Xenopus_tropicalis
ENSPMEG00000009064	trub1	90	96.400	ENSXCOG00000017847	trub1	88	96.400	Xiphophorus_couchianus
ENSPMEG00000009064	trub1	100	96.029	ENSXMAG00000014701	trub1	100	96.029	Xiphophorus_maculatus