EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000010375 (Gene tree)
Gene ID: 106910335
Gene Symbol: rbm42
Alias: -
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 9982 bases
Position: chrKQ554432.1:7903-17884
Accession: 106910335
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000008599	RRM_1	PF00076.22	8.5e-18	1	1
ENSPMEP00000008609	RRM_1	PF00076.22	8.5e-18	1	1
ENSPMEP00000026599	RRM_1	PF00076.22	8.5e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000002166	-	4319	XM_014976943	ENSPMEP00000026599	398 (aa)	XP_014832429	UPI00072E38A5
ENSPMET00000002153	-	4620	XM_014976944	ENSPMEP00000008609	398 (aa)	XP_014832430	UPI00072E38A5
ENSPMET00000002173	-	4229	-	ENSPMEP00000008599	398 (aa)	-	UPI00072E38A5

Gene Model

Click here to download ENSPMEG00000010375's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000010375's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000010375	rbm42	100	80.976	ENSAPOG00000015109	rbm42	100	80.000	Acanthochromis_polyacanthus
ENSPMEG00000010375	rbm42	100	76.528	ENSACIG00000010771	rbm42	100	74.817	Amphilophus_citrinellus
ENSPMEG00000010375	rbm42	100	81.951	ENSAOCG00000008873	rbm42	100	80.244	Amphiprion_ocellaris
ENSPMEG00000010375	rbm42	100	81.951	ENSAPEG00000012051	rbm42	99	80.244	Amphiprion_percula
ENSPMEG00000010375	rbm42	100	80.098	ENSATEG00000000536	rbm42	100	78.133	Anabas_testudineus
ENSPMEG00000010375	rbm42	100	80.488	ENSACLG00000004988	rbm42	100	80.637	Astatotilapia_calliptera
ENSPMEG00000010375	rbm42	100	71.053	ENSAMXG00000016545	rbm42	100	70.913	Astyanax_mexicanus
ENSPMEG00000010375	rbm42	97	77.805	ENSCSEG00000010248	rbm42	100	76.309	Cynoglossus_semilaevis
ENSPMEG00000010375	rbm42	100	87.745	ENSCVAG00000015589	rbm42	100	88.480	Cyprinodon_variegatus
ENSPMEG00000010375	rbm42	100	65.796	ENSDARG00000039910	rbm42	100	69.024	Danio_rerio
ENSPMEG00000010375	rbm42	100	68.558	ENSELUG00000022403	rbm42	100	68.646	Esox_lucius
ENSPMEG00000010375	rbm42	66	87.313	ENSFHEG00000006764	rbm42	89	89.098	Fundulus_heteroclitus
ENSPMEG00000010375	rbm42	100	68.382	ENSGMOG00000012660	rbm42	100	69.193	Gadus_morhua
ENSPMEG00000010375	rbm42	77	97.720	ENSGAFG00000009059	rbm42	100	97.720	Gambusia_affinis
ENSPMEG00000010375	rbm42	100	76.156	ENSGACG00000004170	rbm42	100	73.902	Gasterosteus_aculeatus
ENSPMEG00000010375	rbm42	100	80.244	ENSHBUG00000011141	rbm42	100	80.392	Haplochromis_burtoni
ENSPMEG00000010375	rbm42	100	77.833	ENSHCOG00000021214	rbm42	100	77.833	Hippocampus_comes
ENSPMEG00000010375	rbm42	100	70.714	ENSIPUG00000022365	rbm42	99	69.690	Ictalurus_punctatus
ENSPMEG00000010375	rbm42	91	81.030	ENSKMAG00000015287	rbm42	99	78.495	Kryptolebias_marmoratus
ENSPMEG00000010375	rbm42	100	76.942	ENSLBEG00000017547	rbm42	100	75.669	Labrus_bergylta
ENSPMEG00000010375	rbm42	85	78.223	ENSLBEG00000004578	-	96	75.862	Labrus_bergylta
ENSPMEG00000010375	rbm42	100	66.745	ENSLOCG00000003368	rbm42	100	62.963	Lepisosteus_oculatus
ENSPMEG00000010375	rbm42	100	78.240	ENSMAMG00000006708	rbm42	100	79.462	Mastacembelus_armatus
ENSPMEG00000010375	rbm42	100	80.488	ENSMZEG00005025234	rbm42	100	80.637	Maylandia_zebra
ENSPMEG00000010375	rbm42	91	81.720	ENSMALG00000015720	rbm42	100	79.301	Monopterus_albus
ENSPMEG00000010375	rbm42	100	81.114	ENSONIG00000008029	rbm42	100	78.935	Oreochromis_niloticus
ENSPMEG00000010375	rbm42	100	61.429	ENSORLG00020022507	rbm42	100	61.667	Oryzias_latipes_hni
ENSPMEG00000010375	rbm42	100	78.676	ENSORLG00015000659	rbm42	100	78.676	Oryzias_latipes_hsok
ENSPMEG00000010375	rbm42	64	80.392	ENSOMEG00000014332	rbm42	94	80.392	Oryzias_melastigma
ENSPMEG00000010375	rbm42	100	71.053	ENSPKIG00000015165	rbm42	100	69.544	Paramormyrops_kingsleyae
ENSPMEG00000010375	rbm42	87	72.650	ENSPMGG00000003569	rbm42	100	98.571	Periophthalmus_magnuspinnatus
ENSPMEG00000010375	rbm42	53	54.185	ENSPMAG00000008633	rbm42	100	48.698	Petromyzon_marinus
ENSPMEG00000010375	rbm42	100	99.749	ENSPFOG00000007701	rbm42	100	99.749	Poecilia_formosa
ENSPMEG00000010375	rbm42	100	99.497	ENSPLAG00000009405	rbm42	100	99.497	Poecilia_latipinna
ENSPMEG00000010375	rbm42	100	99.497	ENSPREG00000018102	rbm42	100	99.497	Poecilia_reticulata
ENSPMEG00000010375	rbm42	100	80.196	ENSPNYG00000014460	rbm42	100	80.344	Pundamilia_nyererei
ENSPMEG00000010375	rbm42	100	66.897	ENSPNAG00000009961	rbm42	100	69.048	Pygocentrus_nattereri
ENSPMEG00000010375	rbm42	100	70.853	ENSSFOG00015019227	rbm42	100	69.431	Scleropages_formosus
ENSPMEG00000010375	rbm42	100	77.317	ENSSMAG00000011935	rbm42	100	75.122	Scophthalmus_maximus
ENSPMEG00000010375	rbm42	100	81.418	ENSSDUG00000004033	rbm42	100	79.707	Seriola_dumerili
ENSPMEG00000010375	rbm42	100	71.253	ENSSLDG00000009918	rbm42	100	83.529	Seriola_lalandi_dorsalis
ENSPMEG00000010375	rbm42	100	81.463	ENSSPAG00000019871	rbm42	100	80.244	Stegastes_partitus
ENSPMEG00000010375	rbm42	100	73.775	ENSTRUG00000024586	-	76	71.814	Takifugu_rubripes
ENSPMEG00000010375	rbm42	99	64.626	ENSTNIG00000011669	rbm42	100	63.182	Tetraodon_nigroviridis
ENSPMEG00000010375	rbm42	100	58.768	ENSXETG00000017599	rbm42	100	57.720	Xenopus_tropicalis
ENSPMEG00000010375	rbm42	100	97.257	ENSXMAG00000012827	rbm42	100	97.257	Xiphophorus_maculatus