EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000011398 (Gene tree)
Gene ID: 106911732
Gene Symbol: ddb1
Alias: -
Full Name: damage specific DNA binding protein 1
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 47832 bases
Position: chrKQ551078.1:34180-82011
Accession: 106911732
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000009441	CPSF_A	PF03178.15	2.6e-82	1	1
ENSPMEP00000009436	CPSF_A	PF03178.15	6.9e-77	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000000782	-	3420	XM_014978562	ENSPMEP00000009441	1139 (aa)	XP_014834048	-
ENSPMET00000000795	-	3443	-	ENSPMEP00000009436	1095 (aa)	-	-

Gene Model

Click here to download ENSPMEG00000011398's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000011398's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000011398	ddb1	100	90.614	ENSG00000167986	DDB1	100	96.575	Homo_sapiens
ENSPMEG00000011398	ddb1	98	98.233	ENSAPOG00000005036	ddb1	99	98.469	Acanthochromis_polyacanthus
ENSPMEG00000011398	ddb1	100	90.702	ENSAMEG00000016518	DDB1	100	90.702	Ailuropoda_melanoleuca
ENSPMEG00000011398	ddb1	89	98.571	ENSACIG00000020624	ddb1	99	98.571	Amphilophus_citrinellus
ENSPMEG00000011398	ddb1	100	97.895	ENSAOCG00000003066	ddb1	100	97.895	Amphiprion_ocellaris
ENSPMEG00000011398	ddb1	100	97.895	ENSAPEG00000000092	ddb1	100	97.895	Amphiprion_percula
ENSPMEG00000011398	ddb1	98	98.791	ENSATEG00000020571	ddb1	97	98.791	Anabas_testudineus
ENSPMEG00000011398	ddb1	99	89.381	ENSAPLG00000007174	DDB1	99	89.381	Anas_platyrhynchos
ENSPMEG00000011398	ddb1	100	90.088	ENSACAG00000017758	DDB1	100	90.088	Anolis_carolinensis
ENSPMEG00000011398	ddb1	100	90.614	ENSANAG00000021878	DDB1	100	90.614	Aotus_nancymaae
ENSPMEG00000011398	ddb1	100	97.807	ENSACLG00000012401	ddb1	100	97.807	Astatotilapia_calliptera
ENSPMEG00000011398	ddb1	56	30.464	ENSAMXG00000008485	cpsf1	52	30.464	Astyanax_mexicanus
ENSPMEG00000011398	ddb1	100	90.614	ENSBTAG00000021569	DDB1	93	90.614	Bos_taurus
ENSPMEG00000011398	ddb1	100	36.784	WBGene00010890	ddb-1	100	36.784	Caenorhabditis_elegans
ENSPMEG00000011398	ddb1	100	90.614	ENSCJAG00000019319	DDB1	100	90.614	Callithrix_jacchus
ENSPMEG00000011398	ddb1	100	90.702	ENSCAFG00000016264	DDB1	100	90.702	Canis_familiaris
ENSPMEG00000011398	ddb1	98	91.628	ENSCAFG00020012722	DDB1	99	91.628	Canis_lupus_dingo
ENSPMEG00000011398	ddb1	100	90.614	ENSCHIG00000014969	DDB1	100	90.614	Capra_hircus
ENSPMEG00000011398	ddb1	100	90.263	ENSTSYG00000008027	DDB1	100	90.263	Carlito_syrichta
ENSPMEG00000011398	ddb1	98	90.527	ENSCAPG00000010786	DDB1	100	90.527	Cavia_aperea
ENSPMEG00000011398	ddb1	100	90.526	ENSCPOG00000009956	DDB1	100	90.526	Cavia_porcellus
ENSPMEG00000011398	ddb1	100	90.614	ENSCCAG00000035883	DDB1	100	90.614	Cebus_capucinus
ENSPMEG00000011398	ddb1	100	88.532	ENSCATG00000044495	DDB1	100	88.532	Cercocebus_atys
ENSPMEG00000011398	ddb1	100	90.614	ENSCLAG00000004126	DDB1	100	90.614	Chinchilla_lanigera
ENSPMEG00000011398	ddb1	100	90.614	ENSCSAG00000006392	DDB1	100	90.614	Chlorocebus_sabaeus
ENSPMEG00000011398	ddb1	88	83.673	ENSCHOG00000011377	DDB1	89	83.491	Choloepus_hoffmanni
ENSPMEG00000011398	ddb1	100	90.439	ENSCPBG00000017728	DDB1	100	90.439	Chrysemys_picta_bellii
ENSPMEG00000011398	ddb1	100	61.372	ENSCING00000007437	-	100	61.372	Ciona_intestinalis
ENSPMEG00000011398	ddb1	94	60.444	ENSCSAVG00000004783	-	100	60.444	Ciona_savignyi
ENSPMEG00000011398	ddb1	100	90.614	ENSCANG00000019948	DDB1	100	90.614	Colobus_angolensis_palliatus
ENSPMEG00000011398	ddb1	100	90.702	ENSCGRG00001016599	Ddb1	100	90.702	Cricetulus_griseus_chok1gshd
ENSPMEG00000011398	ddb1	100	90.702	ENSCGRG00000013427	Ddb1	100	90.702	Cricetulus_griseus_crigri
ENSPMEG00000011398	ddb1	97	97.832	ENSCSEG00000012499	ddb1	99	96.154	Cynoglossus_semilaevis
ENSPMEG00000011398	ddb1	98	98.790	ENSCVAG00000019531	ddb1	99	98.790	Cyprinodon_variegatus
ENSPMEG00000011398	ddb1	100	91.856	ENSDARG00000074431	ddb1	100	91.856	Danio_rerio
ENSPMEG00000011398	ddb1	98	91.628	ENSDNOG00000014884	DDB1	97	91.628	Dasypus_novemcinctus
ENSPMEG00000011398	ddb1	84	95.455	ENSDORG00000000127	Ddb1	100	95.455	Dipodomys_ordii
ENSPMEG00000011398	ddb1	100	60.437	FBgn0260962	pic	100	60.437	Drosophila_melanogaster
ENSPMEG00000011398	ddb1	71	95.276	ENSETEG00000001053	-	71	95.276	Echinops_telfairi
ENSPMEG00000011398	ddb1	81	84.477	ENSEBUG00000014593	ddb1	97	84.477	Eptatretus_burgeri
ENSPMEG00000011398	ddb1	100	90.702	ENSEASG00005008184	DDB1	100	90.702	Equus_asinus_asinus
ENSPMEG00000011398	ddb1	100	90.702	ENSECAG00000012136	DDB1	100	90.702	Equus_caballus
ENSPMEG00000011398	ddb1	88	87.037	ENSEEUG00000003194	DDB1	85	87.037	Erinaceus_europaeus
ENSPMEG00000011398	ddb1	100	96.316	ENSELUG00000023868	ddb1	100	96.316	Esox_lucius
ENSPMEG00000011398	ddb1	100	90.702	ENSFCAG00000029716	DDB1	100	90.702	Felis_catus
ENSPMEG00000011398	ddb1	100	90.026	ENSFALG00000011981	DDB1	100	90.026	Ficedula_albicollis
ENSPMEG00000011398	ddb1	100	90.614	ENSFDAG00000005128	DDB1	100	90.614	Fukomys_damarensis
ENSPMEG00000011398	ddb1	90	97.419	ENSFHEG00000022133	ddb1	99	97.419	Fundulus_heteroclitus
ENSPMEG00000011398	ddb1	82	98.328	ENSGMOG00000019386	ddb1	94	98.328	Gadus_morhua
ENSPMEG00000011398	ddb1	100	90.351	ENSGALG00000042333	DDB1	100	90.351	Gallus_gallus
ENSPMEG00000011398	ddb1	98	99.814	ENSGAFG00000013142	ddb1	99	99.814	Gambusia_affinis
ENSPMEG00000011398	ddb1	98	98.131	ENSGACG00000017182	ddb1	100	96.700	Gasterosteus_aculeatus
ENSPMEG00000011398	ddb1	95	90.221	ENSGAGG00000014124	DDB1	100	90.221	Gopherus_agassizii
ENSPMEG00000011398	ddb1	100	90.614	ENSGGOG00000004052	DDB1	100	90.614	Gorilla_gorilla
ENSPMEG00000011398	ddb1	100	97.807	ENSHBUG00000008873	ddb1	100	97.807	Haplochromis_burtoni
ENSPMEG00000011398	ddb1	100	90.614	ENSHGLG00000018430	DDB1	100	90.614	Heterocephalus_glaber_female
ENSPMEG00000011398	ddb1	100	89.649	ENSHGLG00100014475	DDB1	100	89.649	Heterocephalus_glaber_male
ENSPMEG00000011398	ddb1	99	97.235	ENSHCOG00000018670	ddb1	99	97.235	Hippocampus_comes
ENSPMEG00000011398	ddb1	100	95.175	ENSIPUG00000005612	DDB1	100	95.175	Ictalurus_punctatus
ENSPMEG00000011398	ddb1	100	90.614	ENSSTOG00000007552	DDB1	100	90.614	Ictidomys_tridecemlineatus
ENSPMEG00000011398	ddb1	100	90.526	ENSJJAG00000017769	Ddb1	100	90.526	Jaculus_jaculus
ENSPMEG00000011398	ddb1	98	98.883	ENSKMAG00000002315	ddb1	99	98.883	Kryptolebias_marmoratus
ENSPMEG00000011398	ddb1	88	98.647	ENSLBEG00000017065	ddb1	99	98.647	Labrus_bergylta
ENSPMEG00000011398	ddb1	100	90.455	ENSLACG00000017611	DDB1	100	90.455	Latimeria_chalumnae
ENSPMEG00000011398	ddb1	92	87.135	ENSLOCG00000000012	ddb1	100	87.135	Lepisosteus_oculatus
ENSPMEG00000011398	ddb1	100	90.526	ENSLAFG00000011513	DDB1	100	90.526	Loxodonta_africana
ENSPMEG00000011398	ddb1	100	90.614	ENSMFAG00000042035	DDB1	100	90.614	Macaca_fascicularis
ENSPMEG00000011398	ddb1	99	90.628	ENSMMUG00000002691	DDB1	100	90.789	Macaca_mulatta
ENSPMEG00000011398	ddb1	57	30.065	ENSMMUG00000007380	CPSF1	64	30.827	Macaca_mulatta
ENSPMEG00000011398	ddb1	100	90.614	ENSMNEG00000031559	DDB1	100	90.614	Macaca_nemestrina
ENSPMEG00000011398	ddb1	100	90.614	ENSMLEG00000044136	DDB1	100	90.614	Mandrillus_leucophaeus
ENSPMEG00000011398	ddb1	100	98.333	ENSMAMG00000014372	ddb1	100	98.333	Mastacembelus_armatus
ENSPMEG00000011398	ddb1	100	97.807	ENSMZEG00005013835	ddb1	100	97.807	Maylandia_zebra
ENSPMEG00000011398	ddb1	94	89.665	ENSMGAG00000004990	DDB1	100	89.665	Meleagris_gallopavo
ENSPMEG00000011398	ddb1	100	90.702	ENSMAUG00000012926	Ddb1	100	90.702	Mesocricetus_auratus
ENSPMEG00000011398	ddb1	100	90.789	ENSMICG00000013703	DDB1	100	90.789	Microcebus_murinus
ENSPMEG00000011398	ddb1	100	90.614	ENSMOCG00000020499	Ddb1	100	90.614	Microtus_ochrogaster
ENSPMEG00000011398	ddb1	89	98.878	ENSMMOG00000001758	ddb1	99	98.878	Mola_mola
ENSPMEG00000011398	ddb1	100	82.007	ENSMODG00000020353	DDB1	100	82.007	Monodelphis_domestica
ENSPMEG00000011398	ddb1	100	98.158	ENSMALG00000014071	ddb1	100	98.158	Monopterus_albus
ENSPMEG00000011398	ddb1	100	90.702	MGP_CAROLIEiJ_G0022695	Ddb1	100	90.702	Mus_caroli
ENSPMEG00000011398	ddb1	100	90.789	ENSMUSG00000024740	Ddb1	100	90.789	Mus_musculus
ENSPMEG00000011398	ddb1	100	90.702	MGP_PahariEiJ_G0014189	Ddb1	100	90.702	Mus_pahari
ENSPMEG00000011398	ddb1	100	90.789	MGP_SPRETEiJ_G0023609	Ddb1	100	90.789	Mus_spretus
ENSPMEG00000011398	ddb1	100	87.632	ENSMPUG00000014200	DDB1	100	87.632	Mustela_putorius_furo
ENSPMEG00000011398	ddb1	100	90.789	ENSMLUG00000013232	DDB1	100	90.789	Myotis_lucifugus
ENSPMEG00000011398	ddb1	100	90.614	ENSNGAG00000009384	Ddb1	100	90.614	Nannospalax_galili
ENSPMEG00000011398	ddb1	100	97.895	ENSNBRG00000019581	ddb1	100	97.895	Neolamprologus_brichardi
ENSPMEG00000011398	ddb1	100	88.010	ENSNLEG00000002022	DDB1	100	88.010	Nomascus_leucogenys
ENSPMEG00000011398	ddb1	88	95.434	ENSMEUG00000001099	DDB1	93	91.901	Notamacropus_eugenii
ENSPMEG00000011398	ddb1	90	81.959	ENSOPRG00000008254	DDB1	90	81.959	Ochotona_princeps
ENSPMEG00000011398	ddb1	100	90.702	ENSODEG00000002419	DDB1	100	90.702	Octodon_degus
ENSPMEG00000011398	ddb1	100	97.895	ENSONIG00000005804	ddb1	100	97.895	Oreochromis_niloticus
ENSPMEG00000011398	ddb1	91	90.310	ENSOANG00000004897	DDB1	100	90.310	Ornithorhynchus_anatinus
ENSPMEG00000011398	ddb1	100	90.789	ENSOCUG00000001667	DDB1	100	90.789	Oryctolagus_cuniculus
ENSPMEG00000011398	ddb1	98	97.864	ENSORLG00000001399	ddb1	98	97.887	Oryzias_latipes
ENSPMEG00000011398	ddb1	98	97.772	ENSORLG00020001277	ddb1	96	97.772	Oryzias_latipes_hni
ENSPMEG00000011398	ddb1	98	97.864	ENSORLG00015002080	ddb1	99	97.864	Oryzias_latipes_hsok
ENSPMEG00000011398	ddb1	99	96.889	ENSOMEG00000006181	ddb1	99	96.889	Oryzias_melastigma
ENSPMEG00000011398	ddb1	100	90.789	ENSOGAG00000016103	DDB1	100	90.789	Otolemur_garnettii
ENSPMEG00000011398	ddb1	99	90.828	ENSOARG00000011716	DDB1	98	90.828	Ovis_aries
ENSPMEG00000011398	ddb1	100	90.614	ENSPPAG00000035343	DDB1	100	90.614	Pan_paniscus
ENSPMEG00000011398	ddb1	100	90.702	ENSPPRG00000013300	DDB1	100	90.702	Panthera_pardus
ENSPMEG00000011398	ddb1	98	90.706	ENSPTIG00000006909	DDB1	98	90.706	Panthera_tigris_altaica
ENSPMEG00000011398	ddb1	100	90.614	ENSPTRG00000003737	DDB1	100	90.614	Pan_troglodytes
ENSPMEG00000011398	ddb1	100	90.614	ENSPANG00000000242	DDB1	100	90.614	Papio_anubis
ENSPMEG00000011398	ddb1	98	95.810	ENSPKIG00000019213	ddb1	94	95.810	Paramormyrops_kingsleyae
ENSPMEG00000011398	ddb1	98	89.858	ENSPSIG00000013275	DDB1	100	89.858	Pelodiscus_sinensis
ENSPMEG00000011398	ddb1	89	98.469	ENSPMGG00000021179	ddb1	99	98.469	Periophthalmus_magnuspinnatus
ENSPMEG00000011398	ddb1	100	90.702	ENSPEMG00000012241	Ddb1	100	90.702	Peromyscus_maniculatus_bairdii
ENSPMEG00000011398	ddb1	93	87.033	ENSPMAG00000008479	ddb1	100	87.033	Petromyzon_marinus
ENSPMEG00000011398	ddb1	100	90.702	ENSPCIG00000002643	DDB1	100	90.702	Phascolarctos_cinereus
ENSPMEG00000011398	ddb1	100	99.737	ENSPFOG00000002768	ddb1	100	99.737	Poecilia_formosa
ENSPMEG00000011398	ddb1	100	100.000	ENSPLAG00000017227	ddb1	100	100.000	Poecilia_latipinna
ENSPMEG00000011398	ddb1	99	99.908	ENSPREG00000004440	ddb1	98	99.908	Poecilia_reticulata
ENSPMEG00000011398	ddb1	100	86.649	ENSPPYG00000003193	DDB1	100	86.649	Pongo_abelii
ENSPMEG00000011398	ddb1	85	88.571	ENSPCAG00000011040	DDB1	85	88.571	Procavia_capensis
ENSPMEG00000011398	ddb1	100	89.667	ENSPCOG00000015176	DDB1	100	89.667	Propithecus_coquereli
ENSPMEG00000011398	ddb1	100	90.526	ENSPVAG00000003847	DDB1	100	90.526	Pteropus_vampyrus
ENSPMEG00000011398	ddb1	98	96.104	ENSPNAG00000006635	ddb1	98	95.551	Pygocentrus_nattereri
ENSPMEG00000011398	ddb1	100	90.789	ENSRNOG00000020715	Ddb1	100	90.789	Rattus_norvegicus
ENSPMEG00000011398	ddb1	100	90.614	ENSRBIG00000033611	DDB1	100	90.614	Rhinopithecus_bieti
ENSPMEG00000011398	ddb1	57	30.065	ENSRBIG00000044907	CPSF1	64	30.827	Rhinopithecus_bieti
ENSPMEG00000011398	ddb1	100	90.614	ENSRROG00000041407	DDB1	100	90.614	Rhinopithecus_roxellana
ENSPMEG00000011398	ddb1	57	30.065	ENSRROG00000044861	CPSF1	64	30.827	Rhinopithecus_roxellana
ENSPMEG00000011398	ddb1	100	90.702	ENSSBOG00000019775	DDB1	100	90.702	Saimiri_boliviensis_boliviensis
ENSPMEG00000011398	ddb1	94	88.318	ENSSHAG00000011600	DDB1	100	88.318	Sarcophilus_harrisii
ENSPMEG00000011398	ddb1	98	96.093	ENSSFOG00015011151	ddb1	97	96.093	Scleropages_formosus
ENSPMEG00000011398	ddb1	100	97.807	ENSSMAG00000009495	ddb1	100	97.807	Scophthalmus_maximus
ENSPMEG00000011398	ddb1	100	98.333	ENSSDUG00000004642	ddb1	100	98.333	Seriola_dumerili
ENSPMEG00000011398	ddb1	100	98.333	ENSSLDG00000015804	ddb1	100	98.333	Seriola_lalandi_dorsalis
ENSPMEG00000011398	ddb1	71	94.340	ENSSARG00000003290	-	72	94.340	Sorex_araneus
ENSPMEG00000011398	ddb1	100	90.351	ENSSPUG00000019338	DDB1	100	90.351	Sphenodon_punctatus
ENSPMEG00000011398	ddb1	98	98.698	ENSSPAG00000009888	ddb1	99	98.698	Stegastes_partitus
ENSPMEG00000011398	ddb1	100	90.079	ENSSSCG00000013094	DDB1	100	90.079	Sus_scrofa
ENSPMEG00000011398	ddb1	100	90.351	ENSTGUG00000006414	DDB1	100	90.351	Taeniopygia_guttata
ENSPMEG00000011398	ddb1	99	96.327	ENSTRUG00000016682	ddb1	99	96.327	Takifugu_rubripes
ENSPMEG00000011398	ddb1	88	91.916	ENSTNIG00000009565	ddb1	99	91.916	Tetraodon_nigroviridis
ENSPMEG00000011398	ddb1	92	84.465	ENSTTRG00000011055	DDB1	94	84.465	Tursiops_truncatus
ENSPMEG00000011398	ddb1	98	91.628	ENSUAMG00000017793	DDB1	93	91.628	Ursus_americanus
ENSPMEG00000011398	ddb1	98	91.628	ENSUMAG00000011788	DDB1	98	91.628	Ursus_maritimus
ENSPMEG00000011398	ddb1	90	86.566	ENSVPAG00000007963	DDB1	92	86.566	Vicugna_pacos
ENSPMEG00000011398	ddb1	100	90.702	ENSVVUG00000004987	DDB1	100	90.702	Vulpes_vulpes
ENSPMEG00000011398	ddb1	100	87.937	ENSXETG00000008820	ddb1	100	87.937	Xenopus_tropicalis
ENSPMEG00000011398	ddb1	89	99.796	ENSXCOG00000013956	ddb1	99	99.796	Xiphophorus_couchianus
ENSPMEG00000011398	ddb1	98	99.814	ENSXMAG00000000022	ddb1	99	99.814	Xiphophorus_maculatus