EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000011443 (Gene tree)
Gene ID: 106927375
Gene Symbol: -
Alias: -
Full Name: regulator of nonsense transcripts 1
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 21881 bases
Position: chrKQ551928.1:199057-220937
Accession: 106927375
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000009530	UPF1_Zn_bind	PF09416.10	9.8e-75	1	1
ENSPMEP00000009530	ResIII	PF04851.15	3.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000000630	-	3285	XM_015002907	ENSPMEP00000009530	1094 (aa)	XP_014858393	-

Gene Model

Click here to download ENSPMEG00000011443's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000011443's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000011443	-	100	91.447	ENSPMEG00000016319	-	100	91.486

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000011443	-	100	89.750	ENSG00000005007	UPF1	100	89.840	Homo_sapiens
ENSPMEG00000011443	-	100	91.553	ENSAPOG00000010916	-	100	92.022	Acanthochromis_polyacanthus
ENSPMEG00000011443	-	100	94.727	ENSAPOG00000023773	upf1	100	95.000	Acanthochromis_polyacanthus
ENSPMEG00000011443	-	100	89.184	ENSAMEG00000011474	UPF1	100	89.273	Ailuropoda_melanoleuca
ENSPMEG00000011443	-	93	91.334	ENSACIG00000010985	-	100	91.829	Amphilophus_citrinellus
ENSPMEG00000011443	-	100	95.620	ENSACIG00000019949	upf1	100	95.620	Amphilophus_citrinellus
ENSPMEG00000011443	-	100	94.247	ENSAOCG00000018519	upf1	100	94.879	Amphiprion_ocellaris
ENSPMEG00000011443	-	100	91.644	ENSAOCG00000006352	-	100	92.112	Amphiprion_ocellaris
ENSPMEG00000011443	-	100	94.247	ENSAPEG00000016344	upf1	100	94.879	Amphiprion_percula
ENSPMEG00000011443	-	100	91.644	ENSAPEG00000006292	-	100	92.112	Amphiprion_percula
ENSPMEG00000011443	-	100	91.462	ENSATEG00000016606	-	100	91.840	Anabas_testudineus
ENSPMEG00000011443	-	100	93.004	ENSATEG00000017867	upf1	100	93.901	Anabas_testudineus
ENSPMEG00000011443	-	95	91.580	ENSAPLG00000009175	UPF1	100	91.580	Anas_platyrhynchos
ENSPMEG00000011443	-	95	89.182	ENSANAG00000024107	UPF1	96	89.182	Aotus_nancymaae
ENSPMEG00000011443	-	100	95.620	ENSACLG00000007181	upf1	100	95.620	Astatotilapia_calliptera
ENSPMEG00000011443	-	100	91.553	ENSACLG00000022630	-	100	91.931	Astatotilapia_calliptera
ENSPMEG00000011443	-	100	92.636	ENSAMXG00000042187	upf1	100	93.194	Astyanax_mexicanus
ENSPMEG00000011443	-	100	89.204	ENSBTAG00000020922	UPF1	100	89.292	Bos_taurus
ENSPMEG00000011443	-	91	50.802	WBGene00004880	smg-2	95	49.526	Caenorhabditis_elegans
ENSPMEG00000011443	-	100	88.879	ENSCJAG00000019627	UPF1	100	88.967	Callithrix_jacchus
ENSPMEG00000011443	-	100	88.967	ENSCAFG00000014578	UPF1	100	89.056	Canis_familiaris
ENSPMEG00000011443	-	100	89.840	ENSCAFG00020012347	UPF1	100	89.929	Canis_lupus_dingo
ENSPMEG00000011443	-	100	90.080	ENSCHIG00000011018	UPF1	100	90.170	Capra_hircus
ENSPMEG00000011443	-	95	91.271	ENSTSYG00000008877	UPF1	98	91.271	Carlito_syrichta
ENSPMEG00000011443	-	96	90.338	ENSCAPG00000005758	UPF1	96	90.338	Cavia_aperea
ENSPMEG00000011443	-	100	90.126	ENSCPOG00000025463	UPF1	100	90.126	Cavia_porcellus
ENSPMEG00000011443	-	100	89.750	ENSCCAG00000032175	UPF1	100	89.840	Cebus_capucinus
ENSPMEG00000011443	-	94	91.429	ENSCATG00000040306	UPF1	98	91.429	Cercocebus_atys
ENSPMEG00000011443	-	95	91.176	ENSCLAG00000004037	UPF1	99	91.176	Chinchilla_lanigera
ENSPMEG00000011443	-	100	89.750	ENSCSAG00000005276	UPF1	100	89.840	Chlorocebus_sabaeus
ENSPMEG00000011443	-	100	90.412	ENSCPBG00000012513	UPF1	100	90.591	Chrysemys_picta_bellii
ENSPMEG00000011443	-	77	79.812	ENSCING00000021399	-	99	79.953	Ciona_intestinalis
ENSPMEG00000011443	-	99	72.137	ENSCSAVG00000006533	-	99	72.637	Ciona_savignyi
ENSPMEG00000011443	-	95	91.176	ENSCANG00000029819	UPF1	97	91.176	Colobus_angolensis_palliatus
ENSPMEG00000011443	-	100	89.803	ENSCGRG00001021067	Upf1	100	89.893	Cricetulus_griseus_chok1gshd
ENSPMEG00000011443	-	95	90.806	ENSCGRG00000013480	Upf1	98	90.806	Cricetulus_griseus_crigri
ENSPMEG00000011443	-	100	91.470	ENSCSEG00000016159	-	100	91.470	Cynoglossus_semilaevis
ENSPMEG00000011443	-	100	89.426	ENSCSEG00000017239	upf1	100	89.608	Cynoglossus_semilaevis
ENSPMEG00000011443	-	100	91.099	ENSCVAG00000010561	upf1	100	91.478	Cyprinodon_variegatus
ENSPMEG00000011443	-	100	92.455	ENSDARG00000016302	upf1	100	92.670	Danio_rerio
ENSPMEG00000011443	-	95	88.826	ENSDORG00000009984	Upf1	95	88.826	Dipodomys_ordii
ENSPMEG00000011443	-	85	72.572	FBgn0030354	Upf1	88	67.143	Drosophila_melanogaster
ENSPMEG00000011443	-	54	86.589	ENSEBUG00000010069	upf1	96	86.589	Eptatretus_burgeri
ENSPMEG00000011443	-	100	90.080	ENSEASG00005006549	UPF1	100	90.170	Equus_asinus_asinus
ENSPMEG00000011443	-	100	90.080	ENSECAG00000010639	UPF1	100	90.170	Equus_caballus
ENSPMEG00000011443	-	100	91.147	ENSELUG00000012916	-	100	91.516	Esox_lucius
ENSPMEG00000011443	-	100	92.224	ENSELUG00000020917	upf1	100	92.509	Esox_lucius
ENSPMEG00000011443	-	100	88.967	ENSFCAG00000009757	UPF1	100	89.056	Felis_catus
ENSPMEG00000011443	-	95	92.095	ENSFALG00000009312	UPF1	96	92.095	Ficedula_albicollis
ENSPMEG00000011443	-	95	91.082	ENSFDAG00000014816	UPF1	99	91.082	Fukomys_damarensis
ENSPMEG00000011443	-	86	93.267	ENSFHEG00000016276	-	96	93.267	Fundulus_heteroclitus
ENSPMEG00000011443	-	100	93.243	ENSFHEG00000006428	upf1	100	93.243	Fundulus_heteroclitus
ENSPMEG00000011443	-	100	90.541	ENSGMOG00000007541	upf1	100	90.754	Gadus_morhua
ENSPMEG00000011443	-	100	90.089	ENSGALG00000003220	UPF1	100	90.268	Gallus_gallus
ENSPMEG00000011443	-	63	97.550	ENSGAFG00000015443	-	85	97.550	Gambusia_affinis
ENSPMEG00000011443	-	100	91.439	ENSGAFG00000004831	upf1	100	91.568	Gambusia_affinis
ENSPMEG00000011443	-	100	90.819	ENSGAGG00000022217	UPF1	100	91.089	Gopherus_agassizii
ENSPMEG00000011443	-	95	92.138	ENSGGOG00000002608	UPF1	99	92.138	Gorilla_gorilla
ENSPMEG00000011443	-	89	94.805	ENSHBUG00000014694	upf1	100	94.805	Haplochromis_burtoni
ENSPMEG00000011443	-	87	94.872	ENSHBUG00000008939	upf1	95	94.872	Haplochromis_burtoni
ENSPMEG00000011443	-	100	88.967	ENSHGLG00000010900	UPF1	100	89.056	Heterocephalus_glaber_female
ENSPMEG00000011443	-	95	89.564	ENSHGLG00100005904	UPF1	96	89.564	Heterocephalus_glaber_male
ENSPMEG00000011443	-	100	91.395	ENSHCOG00000008918	upf1	100	91.584	Hippocampus_comes
ENSPMEG00000011443	-	100	92.818	ENSIPUG00000005108	UPF1	100	93.194	Ictalurus_punctatus
ENSPMEG00000011443	-	100	89.750	ENSSTOG00000009196	UPF1	100	89.840	Ictidomys_tridecemlineatus
ENSPMEG00000011443	-	100	89.086	ENSJJAG00000023151	Upf1	100	89.175	Jaculus_jaculus
ENSPMEG00000011443	-	100	91.190	ENSKMAG00000004962	upf1	100	91.568	Kryptolebias_marmoratus
ENSPMEG00000011443	-	100	91.379	ENSLBEG00000027848	-	100	91.682	Labrus_bergylta
ENSPMEG00000011443	-	100	92.812	ENSLBEG00000014862	upf1	100	93.890	Labrus_bergylta
ENSPMEG00000011443	-	63	91.583	ENSLACG00000008482	UPF1	100	91.583	Latimeria_chalumnae
ENSPMEG00000011443	-	100	92.182	ENSLOCG00000002072	upf1	100	92.740	Lepisosteus_oculatus
ENSPMEG00000011443	-	100	88.859	ENSLAFG00000014963	UPF1	100	88.948	Loxodonta_africana
ENSPMEG00000011443	-	100	89.511	ENSMFAG00000037748	UPF1	100	89.600	Macaca_fascicularis
ENSPMEG00000011443	-	100	89.273	ENSMMUG00000023286	UPF1	100	89.362	Macaca_mulatta
ENSPMEG00000011443	-	100	89.511	ENSMNEG00000000046	UPF1	100	89.600	Macaca_nemestrina
ENSPMEG00000011443	-	95	91.176	ENSMLEG00000028404	UPF1	99	91.176	Mandrillus_leucophaeus
ENSPMEG00000011443	-	100	93.004	ENSMAMG00000006229	upf1	100	93.991	Mastacembelus_armatus
ENSPMEG00000011443	-	100	91.561	ENSMAMG00000006231	-	100	91.863	Mastacembelus_armatus
ENSPMEG00000011443	-	100	93.688	ENSMZEG00005003489	upf1	100	94.680	Maylandia_zebra
ENSPMEG00000011443	-	100	91.553	ENSMZEG00005016386	-	100	91.931	Maylandia_zebra
ENSPMEG00000011443	-	95	91.090	ENSMGAG00000004745	UPF1	100	91.090	Meleagris_gallopavo
ENSPMEG00000011443	-	95	90.806	ENSMAUG00000011398	Upf1	95	90.806	Mesocricetus_auratus
ENSPMEG00000011443	-	100	89.840	ENSMICG00000001659	UPF1	100	89.929	Microcebus_murinus
ENSPMEG00000011443	-	100	88.928	ENSMOCG00000005699	Upf1	100	89.105	Microtus_ochrogaster
ENSPMEG00000011443	-	95	88.995	ENSMMOG00000007537	-	99	89.494	Mola_mola
ENSPMEG00000011443	-	100	93.790	ENSMMOG00000007881	upf1	100	93.973	Mola_mola
ENSPMEG00000011443	-	100	88.908	ENSMODG00000003689	UPF1	100	89.085	Monodelphis_domestica
ENSPMEG00000011443	-	100	89.955	ENSMALG00000018100	-	100	90.425	Monopterus_albus
ENSPMEG00000011443	-	100	93.699	ENSMALG00000000144	upf1	100	94.247	Monopterus_albus
ENSPMEG00000011443	-	100	89.714	MGP_CAROLIEiJ_G0031142	Upf1	100	89.803	Mus_caroli
ENSPMEG00000011443	-	100	89.714	ENSMUSG00000058301	Upf1	100	89.803	Mus_musculus
ENSPMEG00000011443	-	100	89.714	MGP_PahariEiJ_G0021607	Upf1	100	89.803	Mus_pahari
ENSPMEG00000011443	-	100	89.714	MGP_SPRETEiJ_G0032260	Upf1	100	89.803	Mus_spretus
ENSPMEG00000011443	-	100	89.840	ENSMPUG00000015516	UPF1	100	89.929	Mustela_putorius_furo
ENSPMEG00000011443	-	99	89.714	ENSMLUG00000012122	UPF1	99	89.803	Myotis_lucifugus
ENSPMEG00000011443	-	100	88.693	ENSNGAG00000024107	Upf1	100	88.781	Nannospalax_galili
ENSPMEG00000011443	-	100	88.179	ENSNBRG00000022069	-	100	91.465	Neolamprologus_brichardi
ENSPMEG00000011443	-	100	93.522	ENSNBRG00000000670	upf1	100	93.522	Neolamprologus_brichardi
ENSPMEG00000011443	-	95	85.484	ENSNLEG00000006062	UPF1	99	85.484	Nomascus_leucogenys
ENSPMEG00000011443	-	83	85.770	ENSMEUG00000014146	-	83	85.770	Notamacropus_eugenii
ENSPMEG00000011443	-	95	86.111	ENSOPRG00000014018	UPF1	99	86.111	Ochotona_princeps
ENSPMEG00000011443	-	100	89.937	ENSODEG00000012426	UPF1	100	89.937	Octodon_degus
ENSPMEG00000011443	-	100	93.778	ENSONIG00000010452	upf1	100	94.770	Oreochromis_niloticus
ENSPMEG00000011443	-	100	91.553	ENSONIG00000012729	-	100	91.931	Oreochromis_niloticus
ENSPMEG00000011443	-	100	89.558	ENSOANG00000004568	UPF1	100	89.558	Ornithorhynchus_anatinus
ENSPMEG00000011443	-	100	91.222	ENSORLG00000008453	upf1	100	91.222	Oryzias_latipes
ENSPMEG00000011443	-	100	91.139	ENSORLG00020014758	upf1	100	91.139	Oryzias_latipes_hni
ENSPMEG00000011443	-	100	91.139	ENSORLG00015010165	upf1	100	91.139	Oryzias_latipes_hsok
ENSPMEG00000011443	-	100	91.493	ENSOMEG00000003665	upf1	100	91.493	Oryzias_melastigma
ENSPMEG00000011443	-	100	89.840	ENSOGAG00000012866	UPF1	100	89.929	Otolemur_garnettii
ENSPMEG00000011443	-	96	88.062	ENSOARG00000010739	UPF1	100	88.062	Ovis_aries
ENSPMEG00000011443	-	95	91.176	ENSPPAG00000043884	UPF1	96	91.176	Pan_paniscus
ENSPMEG00000011443	-	100	88.967	ENSPPRG00000023470	UPF1	100	89.056	Panthera_pardus
ENSPMEG00000011443	-	95	90.048	ENSPTIG00000010159	UPF1	99	90.048	Panthera_tigris_altaica
ENSPMEG00000011443	-	100	89.511	ENSPTRG00000010721	UPF1	100	89.600	Pan_troglodytes
ENSPMEG00000011443	-	100	89.511	ENSPANG00000008847	UPF1	100	89.600	Papio_anubis
ENSPMEG00000011443	-	90	94.742	ENSPKIG00000006069	upf1	95	94.742	Paramormyrops_kingsleyae
ENSPMEG00000011443	-	70	91.016	ENSPSIG00000009491	UPF1	100	91.016	Pelodiscus_sinensis
ENSPMEG00000011443	-	100	91.916	ENSPMGG00000017327	upf1	100	91.968	Periophthalmus_magnuspinnatus
ENSPMEG00000011443	-	100	88.928	ENSPEMG00000001085	Upf1	100	89.017	Peromyscus_maniculatus_bairdii
ENSPMEG00000011443	-	100	86.396	ENSPMAG00000001206	upf1	100	86.396	Petromyzon_marinus
ENSPMEG00000011443	-	100	90.277	ENSPCIG00000006156	UPF1	100	90.366	Phascolarctos_cinereus
ENSPMEG00000011443	-	100	98.555	ENSPLAG00000018155	-	100	98.555	Poecilia_latipinna
ENSPMEG00000011443	-	100	91.530	ENSPLAG00000016232	-	100	91.568	Poecilia_latipinna
ENSPMEG00000011443	-	100	97.385	ENSPREG00000009940	upf1	100	97.385	Poecilia_reticulata
ENSPMEG00000011443	-	100	91.348	ENSPREG00000011247	-	100	91.387	Poecilia_reticulata
ENSPMEG00000011443	-	100	84.439	ENSPPYG00000009752	UPF1	100	84.527	Pongo_abelii
ENSPMEG00000011443	-	70	98.316	ENSPCAG00000012962	UPF1	69	98.316	Procavia_capensis
ENSPMEG00000011443	-	100	89.441	ENSPCOG00000023813	UPF1	100	89.530	Propithecus_coquereli
ENSPMEG00000011443	-	68	94.872	ENSPVAG00000003183	UPF1	69	94.872	Pteropus_vampyrus
ENSPMEG00000011443	-	100	91.553	ENSPNYG00000016731	-	100	91.931	Pundamilia_nyererei
ENSPMEG00000011443	-	100	93.688	ENSPNYG00000003694	upf1	100	94.680	Pundamilia_nyererei
ENSPMEG00000011443	-	100	92.727	ENSPNAG00000025614	upf1	100	93.285	Pygocentrus_nattereri
ENSPMEG00000011443	-	100	89.714	ENSRNOG00000020134	Upf1	100	89.803	Rattus_norvegicus
ENSPMEG00000011443	-	95	88.899	ENSRBIG00000013894	UPF1	98	92.358	Rhinopithecus_bieti
ENSPMEG00000011443	-	95	91.176	ENSRROG00000040935	UPF1	98	92.358	Rhinopithecus_roxellana
ENSPMEG00000011443	-	77	55.309	YMR080C	NAM7	87	55.309	Saccharomyces_cerevisiae
ENSPMEG00000011443	-	94	91.429	ENSSBOG00000023632	UPF1	96	91.429	Saimiri_boliviensis_boliviensis
ENSPMEG00000011443	-	95	91.383	ENSSHAG00000010499	UPF1	100	91.383	Sarcophilus_harrisii
ENSPMEG00000011443	-	100	92.098	ENSSFOG00015021095	upf1	100	92.566	Scleropages_formosus
ENSPMEG00000011443	-	100	91.561	ENSSMAG00000021018	-	100	91.938	Scophthalmus_maximus
ENSPMEG00000011443	-	100	92.093	ENSSMAG00000005055	upf1	100	93.082	Scophthalmus_maximus
ENSPMEG00000011443	-	100	91.470	ENSSDUG00000009629	-	100	91.938	Seriola_dumerili
ENSPMEG00000011443	-	100	93.274	ENSSDUG00000013320	upf1	100	94.170	Seriola_dumerili
ENSPMEG00000011443	-	100	94.118	ENSSLDG00000020868	upf1	100	95.023	Seriola_lalandi_dorsalis
ENSPMEG00000011443	-	100	91.470	ENSSLDG00000006878	-	100	91.938	Seriola_lalandi_dorsalis
ENSPMEG00000011443	-	100	90.558	ENSSPUG00000010538	UPF1	100	90.917	Sphenodon_punctatus
ENSPMEG00000011443	-	100	92.909	ENSSPAG00000000003	upf1	100	92.909	Stegastes_partitus
ENSPMEG00000011443	-	100	91.636	ENSSPAG00000011521	-	100	91.840	Stegastes_partitus
ENSPMEG00000011443	-	100	90.080	ENSSSCG00000039301	UPF1	99	92.153	Sus_scrofa
ENSPMEG00000011443	-	83	85.638	ENSTGUG00000001057	UPF1	100	89.645	Taeniopygia_guttata
ENSPMEG00000011443	-	100	93.601	ENSTRUG00000000150	upf1	100	93.784	Takifugu_rubripes
ENSPMEG00000011443	-	100	90.719	ENSTRUG00000005131	-	100	91.024	Takifugu_rubripes
ENSPMEG00000011443	-	100	86.416	ENSTTRG00000011544	UPF1	100	86.416	Tursiops_truncatus
ENSPMEG00000011443	-	100	89.840	ENSUAMG00000007093	UPF1	100	89.929	Ursus_americanus
ENSPMEG00000011443	-	95	92.153	ENSUMAG00000006652	UPF1	99	92.968	Ursus_maritimus
ENSPMEG00000011443	-	100	89.840	ENSVVUG00000007797	UPF1	100	89.929	Vulpes_vulpes
ENSPMEG00000011443	-	100	77.836	ENSXETG00000013602	upf1	100	77.836	Xenopus_tropicalis
ENSPMEG00000011443	-	94	92.121	ENSXCOG00000005764	-	99	92.256	Xiphophorus_couchianus
ENSPMEG00000011443	-	97	96.503	ENSXCOG00000015275	-	96	96.503	Xiphophorus_couchianus
ENSPMEG00000011443	-	100	91.447	ENSXMAG00000002540	-	100	91.576	Xiphophorus_maculatus
ENSPMEG00000011443	-	100	96.709	ENSXMAG00000001703	-	100	96.709	Xiphophorus_maculatus