EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000012288 (Gene tree)
Gene ID: 106914134
Gene Symbol: smndc1
Alias: -
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 6916 bases
Position: chrKQ551094.1:426462-433377
Accession: 106914134
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000010336	TUDOR	PF00567.24	0.00027	1	1
ENSPMEP00000010336	SMN	PF06003.12	1.4e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000017151	-	4195	XM_014980738	ENSPMEP00000010336	238 (aa)	XP_014836224	UPI00072E9751

Gene Model

Click here to download ENSPMEG00000012288's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000012288's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000012288	smndc1	100	76.050	ENSG00000119953	SMNDC1	100	76.050	Homo_sapiens
ENSPMEG00000012288	smndc1	100	91.597	ENSAPOG00000021772	smndc1	100	91.597	Acanthochromis_polyacanthus
ENSPMEG00000012288	smndc1	100	76.050	ENSAMEG00000005251	SMNDC1	100	76.050	Ailuropoda_melanoleuca
ENSPMEG00000012288	smndc1	100	89.496	ENSACIG00000004819	smndc1	100	89.496	Amphilophus_citrinellus
ENSPMEG00000012288	smndc1	100	91.176	ENSAOCG00000017869	smndc1	100	91.176	Amphiprion_ocellaris
ENSPMEG00000012288	smndc1	100	91.176	ENSAPEG00000007752	smndc1	100	91.176	Amphiprion_percula
ENSPMEG00000012288	smndc1	100	90.756	ENSATEG00000006830	smndc1	100	90.756	Anabas_testudineus
ENSPMEG00000012288	smndc1	83	76.768	ENSAPLG00000004322	SMNDC1	100	76.768	Anas_platyrhynchos
ENSPMEG00000012288	smndc1	100	77.311	ENSACAG00000005983	SMNDC1	100	77.311	Anolis_carolinensis
ENSPMEG00000012288	smndc1	100	76.050	ENSANAG00000032875	SMNDC1	100	76.050	Aotus_nancymaae
ENSPMEG00000012288	smndc1	100	88.655	ENSACLG00000016360	smndc1	100	88.655	Astatotilapia_calliptera
ENSPMEG00000012288	smndc1	100	81.092	ENSAMXG00000020310	smndc1	100	81.092	Astyanax_mexicanus
ENSPMEG00000012288	smndc1	100	76.050	ENSBTAG00000000551	SMNDC1	100	76.050	Bos_taurus
ENSPMEG00000012288	smndc1	100	76.050	ENSCJAG00000018624	SMNDC1	100	76.050	Callithrix_jacchus
ENSPMEG00000012288	smndc1	100	76.050	ENSCAFG00000010720	SMNDC1	100	76.050	Canis_familiaris
ENSPMEG00000012288	smndc1	100	76.050	ENSCAFG00020011913	SMNDC1	100	76.050	Canis_lupus_dingo
ENSPMEG00000012288	smndc1	100	76.050	ENSCHIG00000010604	SMNDC1	100	76.050	Capra_hircus
ENSPMEG00000012288	smndc1	100	76.050	ENSTSYG00000026454	SMNDC1	100	76.050	Carlito_syrichta
ENSPMEG00000012288	smndc1	100	62.500	ENSCAPG00000009132	SMNDC1	100	72.637	Cavia_aperea
ENSPMEG00000012288	smndc1	100	76.050	ENSCPOG00000031666	SMNDC1	100	76.050	Cavia_porcellus
ENSPMEG00000012288	smndc1	100	76.050	ENSCCAG00000021793	SMNDC1	100	76.050	Cebus_capucinus
ENSPMEG00000012288	smndc1	100	75.630	ENSCATG00000035910	SMNDC1	100	75.630	Cercocebus_atys
ENSPMEG00000012288	smndc1	100	76.050	ENSCLAG00000002838	SMNDC1	100	76.050	Chinchilla_lanigera
ENSPMEG00000012288	smndc1	100	76.050	ENSCSAG00000005169	SMNDC1	100	76.050	Chlorocebus_sabaeus
ENSPMEG00000012288	smndc1	81	71.503	ENSCHOG00000002936	SMNDC1	100	71.503	Choloepus_hoffmanni
ENSPMEG00000012288	smndc1	100	76.471	ENSCPBG00000012837	SMNDC1	100	76.471	Chrysemys_picta_bellii
ENSPMEG00000012288	smndc1	100	59.244	ENSCANG00000036994	-	100	59.244	Colobus_angolensis_palliatus
ENSPMEG00000012288	smndc1	100	76.050	ENSCANG00000031720	-	100	76.050	Colobus_angolensis_palliatus
ENSPMEG00000012288	smndc1	100	69.748	ENSCANG00000034620	-	100	69.748	Colobus_angolensis_palliatus
ENSPMEG00000012288	smndc1	100	75.630	ENSCGRG00001012973	Smndc1	100	75.630	Cricetulus_griseus_chok1gshd
ENSPMEG00000012288	smndc1	100	75.630	ENSCGRG00000012396	Smndc1	100	75.630	Cricetulus_griseus_crigri
ENSPMEG00000012288	smndc1	100	86.555	ENSCSEG00000015621	smndc1	100	86.555	Cynoglossus_semilaevis
ENSPMEG00000012288	smndc1	100	92.437	ENSCVAG00000020432	smndc1	100	92.437	Cyprinodon_variegatus
ENSPMEG00000012288	smndc1	100	82.773	ENSDARG00000056235	smndc1	100	82.773	Danio_rerio
ENSPMEG00000012288	smndc1	100	76.050	ENSDNOG00000016387	SMNDC1	83	76.050	Dasypus_novemcinctus
ENSPMEG00000012288	smndc1	100	76.050	ENSDORG00000023715	Smndc1	100	76.050	Dipodomys_ordii
ENSPMEG00000012288	smndc1	95	40.562	FBgn0039977	CG17454	98	42.169	Drosophila_melanogaster
ENSPMEG00000012288	smndc1	100	66.805	ENSEBUG00000010929	smndc1	100	68.465	Eptatretus_burgeri
ENSPMEG00000012288	smndc1	100	76.050	ENSEASG00005014930	SMNDC1	100	76.050	Equus_asinus_asinus
ENSPMEG00000012288	smndc1	100	76.050	ENSECAG00000029973	SMNDC1	100	76.050	Equus_caballus
ENSPMEG00000012288	smndc1	83	55.051	ENSEEUG00000013407	-	100	55.051	Erinaceus_europaeus
ENSPMEG00000012288	smndc1	100	82.353	ENSELUG00000000227	smndc1	100	82.353	Esox_lucius
ENSPMEG00000012288	smndc1	100	76.050	ENSFCAG00000027353	SMNDC1	100	76.050	Felis_catus
ENSPMEG00000012288	smndc1	100	77.731	ENSFALG00000002306	SMNDC1	100	77.731	Ficedula_albicollis
ENSPMEG00000012288	smndc1	100	76.050	ENSFDAG00000006468	SMNDC1	100	76.050	Fukomys_damarensis
ENSPMEG00000012288	smndc1	100	93.697	ENSFHEG00000020150	smndc1	100	93.697	Fundulus_heteroclitus
ENSPMEG00000012288	smndc1	100	82.773	ENSGMOG00000016585	smndc1	100	82.773	Gadus_morhua
ENSPMEG00000012288	smndc1	100	77.731	ENSGALG00000008561	SMNDC1	100	77.731	Gallus_gallus
ENSPMEG00000012288	smndc1	100	96.639	ENSGAFG00000011582	smndc1	100	96.639	Gambusia_affinis
ENSPMEG00000012288	smndc1	100	87.395	ENSGACG00000009468	smndc1	100	87.395	Gasterosteus_aculeatus
ENSPMEG00000012288	smndc1	100	76.471	ENSGAGG00000024547	SMNDC1	100	76.471	Gopherus_agassizii
ENSPMEG00000012288	smndc1	100	76.050	ENSGGOG00000010071	SMNDC1	100	76.050	Gorilla_gorilla
ENSPMEG00000012288	smndc1	100	88.655	ENSHBUG00000017596	smndc1	100	88.655	Haplochromis_burtoni
ENSPMEG00000012288	smndc1	100	76.050	ENSHGLG00000013390	-	100	76.050	Heterocephalus_glaber_female
ENSPMEG00000012288	smndc1	100	55.102	ENSHGLG00000001157	-	100	55.738	Heterocephalus_glaber_female
ENSPMEG00000012288	smndc1	100	76.050	ENSHGLG00100004814	-	100	76.050	Heterocephalus_glaber_male
ENSPMEG00000012288	smndc1	100	61.224	ENSHGLG00100004278	-	100	59.677	Heterocephalus_glaber_male
ENSPMEG00000012288	smndc1	100	84.937	ENSHCOG00000000783	smndc1	100	84.937	Hippocampus_comes
ENSPMEG00000012288	smndc1	100	82.773	ENSIPUG00000004217	smndc1	100	82.773	Ictalurus_punctatus
ENSPMEG00000012288	smndc1	100	76.050	ENSSTOG00000006088	SMNDC1	100	76.050	Ictidomys_tridecemlineatus
ENSPMEG00000012288	smndc1	100	76.050	ENSJJAG00000019974	Smndc1	100	76.050	Jaculus_jaculus
ENSPMEG00000012288	smndc1	100	90.756	ENSKMAG00000020134	smndc1	100	90.756	Kryptolebias_marmoratus
ENSPMEG00000012288	smndc1	100	89.076	ENSLBEG00000004598	smndc1	100	89.076	Labrus_bergylta
ENSPMEG00000012288	smndc1	100	75.210	ENSLACG00000007784	SMNDC1	100	75.210	Latimeria_chalumnae
ENSPMEG00000012288	smndc1	100	83.193	ENSLOCG00000012355	smndc1	100	83.193	Lepisosteus_oculatus
ENSPMEG00000012288	smndc1	100	75.630	ENSLAFG00000014353	SMNDC1	100	75.630	Loxodonta_africana
ENSPMEG00000012288	smndc1	100	76.050	ENSMFAG00000002433	-	100	76.050	Macaca_fascicularis
ENSPMEG00000012288	smndc1	100	63.445	ENSMFAG00000038381	-	100	63.445	Macaca_fascicularis
ENSPMEG00000012288	smndc1	100	63.445	ENSMMUG00000045875	-	100	63.445	Macaca_mulatta
ENSPMEG00000012288	smndc1	100	76.050	ENSMMUG00000007775	SMNDC1	100	76.050	Macaca_mulatta
ENSPMEG00000012288	smndc1	100	66.807	ENSMNEG00000033853	-	100	66.807	Macaca_nemestrina
ENSPMEG00000012288	smndc1	100	76.050	ENSMNEG00000042963	-	100	76.050	Macaca_nemestrina
ENSPMEG00000012288	smndc1	100	71.548	ENSMLEG00000040236	SMNDC1	100	71.130	Mandrillus_leucophaeus
ENSPMEG00000012288	smndc1	89	86.385	ENSMAMG00000018233	smndc1	87	86.385	Mastacembelus_armatus
ENSPMEG00000012288	smndc1	100	88.655	ENSMZEG00005027510	smndc1	100	88.655	Maylandia_zebra
ENSPMEG00000012288	smndc1	99	68.776	ENSMGAG00000010777	SMNDC1	99	68.776	Meleagris_gallopavo
ENSPMEG00000012288	smndc1	100	76.050	ENSMAUG00000012243	-	100	76.050	Mesocricetus_auratus
ENSPMEG00000012288	smndc1	99	62.447	ENSMAUG00000005459	-	93	62.447	Mesocricetus_auratus
ENSPMEG00000012288	smndc1	100	65.966	ENSMICG00000031640	-	100	65.966	Microcebus_murinus
ENSPMEG00000012288	smndc1	100	75.630	ENSMICG00000027336	-	100	75.630	Microcebus_murinus
ENSPMEG00000012288	smndc1	100	75.630	ENSMOCG00000002458	Smndc1	100	75.630	Microtus_ochrogaster
ENSPMEG00000012288	smndc1	100	86.975	ENSMMOG00000008856	smndc1	100	86.975	Mola_mola
ENSPMEG00000012288	smndc1	100	76.050	ENSMODG00000010542	SMNDC1	100	76.050	Monodelphis_domestica
ENSPMEG00000012288	smndc1	100	87.395	ENSMALG00000017598	smndc1	100	87.395	Monopterus_albus
ENSPMEG00000012288	smndc1	100	76.050	MGP_CAROLIEiJ_G0023072	Smndc1	100	76.050	Mus_caroli
ENSPMEG00000012288	smndc1	100	76.050	ENSMUSG00000025024	Smndc1	100	76.050	Mus_musculus
ENSPMEG00000012288	smndc1	100	76.050	MGP_PahariEiJ_G0014560	Smndc1	100	76.050	Mus_pahari
ENSPMEG00000012288	smndc1	100	76.050	MGP_SPRETEiJ_G0023993	Smndc1	100	76.050	Mus_spretus
ENSPMEG00000012288	smndc1	100	76.050	ENSMPUG00000002089	SMNDC1	100	76.050	Mustela_putorius_furo
ENSPMEG00000012288	smndc1	100	76.050	ENSMLUG00000016007	SMNDC1	100	76.050	Myotis_lucifugus
ENSPMEG00000012288	smndc1	100	76.471	ENSNGAG00000006833	Smndc1	100	76.471	Nannospalax_galili
ENSPMEG00000012288	smndc1	100	89.076	ENSNBRG00000017089	smndc1	100	89.076	Neolamprologus_brichardi
ENSPMEG00000012288	smndc1	100	76.050	ENSNLEG00000015471	SMNDC1	100	76.050	Nomascus_leucogenys
ENSPMEG00000012288	smndc1	70	58.683	ENSMEUG00000010120	-	82	58.683	Notamacropus_eugenii
ENSPMEG00000012288	smndc1	100	76.050	ENSOPRG00000015348	SMNDC1	100	76.050	Ochotona_princeps
ENSPMEG00000012288	smndc1	100	54.202	ENSODEG00000007594	-	100	52.101	Octodon_degus
ENSPMEG00000012288	smndc1	100	89.076	ENSONIG00000000434	smndc1	100	89.076	Oreochromis_niloticus
ENSPMEG00000012288	smndc1	100	76.471	ENSOANG00000001598	SMNDC1	100	76.471	Ornithorhynchus_anatinus
ENSPMEG00000012288	smndc1	100	55.882	ENSOCUG00000012274	-	100	58.403	Oryctolagus_cuniculus
ENSPMEG00000012288	smndc1	100	75.630	ENSOCUG00000008145	-	100	75.630	Oryctolagus_cuniculus
ENSPMEG00000012288	smndc1	100	84.034	ENSORLG00000005934	smndc1	95	84.034	Oryzias_latipes
ENSPMEG00000012288	smndc1	100	84.034	ENSORLG00020008796	smndc1	95	84.034	Oryzias_latipes_hni
ENSPMEG00000012288	smndc1	100	83.613	ENSORLG00015013666	smndc1	100	83.613	Oryzias_latipes_hsok
ENSPMEG00000012288	smndc1	100	84.454	ENSOMEG00000007590	smndc1	100	84.454	Oryzias_melastigma
ENSPMEG00000012288	smndc1	100	76.050	ENSOGAG00000000571	SMNDC1	100	76.050	Otolemur_garnettii
ENSPMEG00000012288	smndc1	100	76.050	ENSOARG00000009500	SMNDC1	100	76.050	Ovis_aries
ENSPMEG00000012288	smndc1	100	76.050	ENSPPAG00000027815	SMNDC1	100	76.050	Pan_paniscus
ENSPMEG00000012288	smndc1	100	76.050	ENSPPRG00000013749	SMNDC1	100	76.050	Panthera_pardus
ENSPMEG00000012288	smndc1	100	76.050	ENSPTIG00000011451	SMNDC1	100	76.050	Panthera_tigris_altaica
ENSPMEG00000012288	smndc1	100	76.050	ENSPTRG00000002937	SMNDC1	100	76.050	Pan_troglodytes
ENSPMEG00000012288	smndc1	100	71.849	ENSPANG00000031346	-	100	71.849	Papio_anubis
ENSPMEG00000012288	smndc1	100	76.050	ENSPANG00000020805	-	100	76.050	Papio_anubis
ENSPMEG00000012288	smndc1	100	81.513	ENSPKIG00000017164	smndc1	100	81.513	Paramormyrops_kingsleyae
ENSPMEG00000012288	smndc1	100	76.471	ENSPSIG00000012257	SMNDC1	100	76.471	Pelodiscus_sinensis
ENSPMEG00000012288	smndc1	100	81.933	ENSPMGG00000015651	smndc1	100	81.933	Periophthalmus_magnuspinnatus
ENSPMEG00000012288	smndc1	100	76.050	ENSPEMG00000022058	Smndc1	100	76.050	Peromyscus_maniculatus_bairdii
ENSPMEG00000012288	smndc1	100	65.432	ENSPMAG00000007705	smndc1	100	65.021	Petromyzon_marinus
ENSPMEG00000012288	smndc1	100	76.050	ENSPCIG00000018419	SMNDC1	100	76.050	Phascolarctos_cinereus
ENSPMEG00000012288	smndc1	95	56.195	ENSPCIG00000009693	-	98	56.195	Phascolarctos_cinereus
ENSPMEG00000012288	smndc1	100	99.160	ENSPFOG00000017113	smndc1	100	99.160	Poecilia_formosa
ENSPMEG00000012288	smndc1	100	97.899	ENSPLAG00000010372	smndc1	100	97.899	Poecilia_latipinna
ENSPMEG00000012288	smndc1	100	96.218	ENSPREG00000012279	smndc1	100	96.218	Poecilia_reticulata
ENSPMEG00000012288	smndc1	100	76.050	ENSPPYG00000002643	SMNDC1	100	76.050	Pongo_abelii
ENSPMEG00000012288	smndc1	81	71.503	ENSPCAG00000016183	SMNDC1	100	71.503	Procavia_capensis
ENSPMEG00000012288	smndc1	100	75.630	ENSPCOG00000024343	SMNDC1	100	75.630	Propithecus_coquereli
ENSPMEG00000012288	smndc1	100	60.504	ENSPVAG00000004368	SMNDC1	100	60.504	Pteropus_vampyrus
ENSPMEG00000012288	smndc1	83	86.869	ENSPNYG00000024093	smndc1	86	86.869	Pundamilia_nyererei
ENSPMEG00000012288	smndc1	100	78.992	ENSPNAG00000025285	smndc1	100	78.992	Pygocentrus_nattereri
ENSPMEG00000012288	smndc1	100	76.050	ENSRNOG00000014833	Smndc1	100	76.050	Rattus_norvegicus
ENSPMEG00000012288	smndc1	100	75.630	ENSRBIG00000000224	-	100	75.630	Rhinopithecus_bieti
ENSPMEG00000012288	smndc1	100	62.605	ENSRBIG00000032452	-	100	62.605	Rhinopithecus_bieti
ENSPMEG00000012288	smndc1	100	62.605	ENSRROG00000039125	-	100	62.605	Rhinopithecus_roxellana
ENSPMEG00000012288	smndc1	100	76.050	ENSRROG00000044992	-	100	76.050	Rhinopithecus_roxellana
ENSPMEG00000012288	smndc1	100	76.050	ENSSBOG00000026789	SMNDC1	100	76.050	Saimiri_boliviensis_boliviensis
ENSPMEG00000012288	smndc1	100	76.050	ENSSHAG00000015189	SMNDC1	100	76.050	Sarcophilus_harrisii
ENSPMEG00000012288	smndc1	100	80.672	ENSSFOG00015008311	smndc1	100	80.672	Scleropages_formosus
ENSPMEG00000012288	smndc1	100	89.916	ENSSMAG00000020118	smndc1	100	89.916	Scophthalmus_maximus
ENSPMEG00000012288	smndc1	100	89.916	ENSSDUG00000015330	smndc1	100	89.916	Seriola_dumerili
ENSPMEG00000012288	smndc1	100	89.496	ENSSLDG00000017325	smndc1	100	89.496	Seriola_lalandi_dorsalis
ENSPMEG00000012288	smndc1	100	76.050	ENSSARG00000006063	SMNDC1	100	76.050	Sorex_araneus
ENSPMEG00000012288	smndc1	100	77.731	ENSSPUG00000004574	SMNDC1	100	77.731	Sphenodon_punctatus
ENSPMEG00000012288	smndc1	100	89.496	ENSSPAG00000000338	smndc1	100	89.496	Stegastes_partitus
ENSPMEG00000012288	smndc1	100	76.050	ENSSSCG00000030507	SMNDC1	100	76.050	Sus_scrofa
ENSPMEG00000012288	smndc1	100	77.731	ENSTGUG00000010599	SMNDC1	100	77.731	Taeniopygia_guttata
ENSPMEG00000012288	smndc1	100	83.613	ENSTRUG00000023281	smndc1	100	83.613	Takifugu_rubripes
ENSPMEG00000012288	smndc1	100	83.193	ENSTNIG00000013331	smndc1	100	83.193	Tetraodon_nigroviridis
ENSPMEG00000012288	smndc1	100	76.050	ENSTBEG00000014337	SMNDC1	100	76.050	Tupaia_belangeri
ENSPMEG00000012288	smndc1	100	76.050	ENSUAMG00000008142	SMNDC1	100	76.050	Ursus_americanus
ENSPMEG00000012288	smndc1	100	76.050	ENSUMAG00000023722	SMNDC1	100	76.050	Ursus_maritimus
ENSPMEG00000012288	smndc1	83	75.253	ENSVPAG00000003402	SMNDC1	100	75.253	Vicugna_pacos
ENSPMEG00000012288	smndc1	100	76.050	ENSVVUG00000007820	SMNDC1	100	76.050	Vulpes_vulpes
ENSPMEG00000012288	smndc1	57	64.706	ENSXETG00000015415	SMNDC1	96	64.706	Xenopus_tropicalis
ENSPMEG00000012288	smndc1	100	95.378	ENSXCOG00000009159	smndc1	100	95.378	Xiphophorus_couchianus
ENSPMEG00000012288	smndc1	100	96.218	ENSXMAG00000012755	smndc1	100	96.218	Xiphophorus_maculatus