EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000012743 (Gene tree)
Gene ID: 106931408
Gene Symbol: trnau1apb
Alias: -
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 7595 bases
Position: chrKQ552347.1:273773-281367
Accession: 106931408
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000010768	RRM_1	PF00076.22	2.7e-31	1	2
ENSPMEP00000010768	RRM_1	PF00076.22	2.7e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000031122	-	2097	XM_015009522	ENSPMEP00000010768	344 (aa)	XP_014865008	UPI000444661F

Gene Model

Click here to download ENSPMEG00000012743's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000012743's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000012743	trnau1apb	51	31.868	ENSPMEG00000018062	-	68	31.868
ENSPMEG00000012743	trnau1apb	54	30.168	ENSPMEG00000019739	pabpc4	59	30.168
ENSPMEG00000012743	trnau1apb	54	30.000	ENSPMEG00000013469	tia1l	68	30.000
ENSPMEG00000012743	trnau1apb	94	40.541	ENSPMEG00000016387	trnau1apa	91	41.590

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000012743	trnau1apb	99	74.052	ENSAPOG00000010086	trnau1apb	100	75.872	Acanthochromis_polyacanthus
ENSPMEG00000012743	trnau1apb	99	78.261	ENSACIG00000001863	trnau1apb	100	77.746	Amphilophus_citrinellus
ENSPMEG00000012743	trnau1apb	99	84.104	ENSAOCG00000011891	trnau1apb	100	82.471	Amphiprion_ocellaris
ENSPMEG00000012743	trnau1apb	99	73.333	ENSAPEG00000008029	trnau1apb	100	82.948	Amphiprion_percula
ENSPMEG00000012743	trnau1apb	99	83.526	ENSATEG00000002196	trnau1apb	100	81.609	Anabas_testudineus
ENSPMEG00000012743	trnau1apb	99	77.650	ENSACLG00000003016	trnau1apb	100	77.364	Astatotilapia_calliptera
ENSPMEG00000012743	trnau1apb	99	62.573	ENSAMXG00000001805	trnau1apb	99	62.865	Astyanax_mexicanus
ENSPMEG00000012743	trnau1apb	99	79.827	ENSCSEG00000018215	trnau1apb	98	81.121	Cynoglossus_semilaevis
ENSPMEG00000012743	trnau1apb	95	88.379	ENSCVAG00000017866	trnau1apb	100	88.379	Cyprinodon_variegatus
ENSPMEG00000012743	trnau1apb	99	60.526	ENSDARG00000056475	trnau1apb	98	60.411	Danio_rerio
ENSPMEG00000012743	trnau1apb	99	62.139	ENSELUG00000016683	trnau1apb	99	63.610	Esox_lucius
ENSPMEG00000012743	trnau1apb	100	91.570	ENSFHEG00000001267	trnau1apb	100	91.570	Fundulus_heteroclitus
ENSPMEG00000012743	trnau1apb	99	70.725	ENSGMOG00000001160	trnau1apb	100	71.965	Gadus_morhua
ENSPMEG00000012743	trnau1apb	99	69.653	ENSGAFG00000006770	trnau1apb	100	80.115	Gambusia_affinis
ENSPMEG00000012743	trnau1apb	99	74.566	ENSGACG00000014944	trnau1apb	100	75.434	Gasterosteus_aculeatus
ENSPMEG00000012743	trnau1apb	71	39.271	ENSGAGG00000022384	-	78	39.357	Gopherus_agassizii
ENSPMEG00000012743	trnau1apb	100	84.150	ENSHBUG00000018944	trnau1apb	100	82.521	Haplochromis_burtoni
ENSPMEG00000012743	trnau1apb	66	79.913	ENSHCOG00000011350	trnau1apb	78	78.138	Hippocampus_comes
ENSPMEG00000012743	trnau1apb	99	59.544	ENSIPUG00000008843	tsp1l	99	63.743	Ictalurus_punctatus
ENSPMEG00000012743	trnau1apb	63	91.364	ENSKMAG00000010082	trnau1apb	100	87.283	Kryptolebias_marmoratus
ENSPMEG00000012743	trnau1apb	99	79.130	ENSLBEG00000020480	trnau1apb	100	78.551	Labrus_bergylta
ENSPMEG00000012743	trnau1apb	99	50.289	ENSLOCG00000013175	trnau1apb	99	50.847	Lepisosteus_oculatus
ENSPMEG00000012743	trnau1apb	99	82.948	ENSMAMG00000012192	trnau1apb	100	84.104	Mastacembelus_armatus
ENSPMEG00000012743	trnau1apb	100	84.150	ENSMZEG00005014852	trnau1apb	100	82.521	Maylandia_zebra
ENSPMEG00000012743	trnau1apb	71	37.652	ENSMGAG00000003234	-	98	38.462	Meleagris_gallopavo
ENSPMEG00000012743	trnau1apb	97	72.493	ENSMMOG00000021521	trnau1apb	100	72.493	Mola_mola
ENSPMEG00000012743	trnau1apb	99	72.141	ENSMALG00000003772	trnau1apb	100	71.720	Monopterus_albus
ENSPMEG00000012743	trnau1apb	97	77.581	ENSNBRG00000000751	trnau1apb	99	77.286	Neolamprologus_brichardi
ENSPMEG00000012743	trnau1apb	99	73.099	ENSONIG00000016639	trnau1apb	100	72.807	Oreochromis_niloticus
ENSPMEG00000012743	trnau1apb	100	77.168	ENSORLG00000013265	trnau1apb	100	81.844	Oryzias_latipes
ENSPMEG00000012743	trnau1apb	100	76.657	ENSORLG00020004464	trnau1apb	100	81.268	Oryzias_latipes_hni
ENSPMEG00000012743	trnau1apb	100	76.657	ENSORLG00015021098	trnau1apb	100	81.268	Oryzias_latipes_hsok
ENSPMEG00000012743	trnau1apb	100	78.674	ENSOMEG00000016531	trnau1apb	100	84.150	Oryzias_melastigma
ENSPMEG00000012743	trnau1apb	99	55.172	ENSPKIG00000007995	trnau1apb	99	58.453	Paramormyrops_kingsleyae
ENSPMEG00000012743	trnau1apb	71	40.891	ENSPSIG00000004189	-	78	40.161	Pelodiscus_sinensis
ENSPMEG00000012743	trnau1apb	78	75.732	ENSPMGG00000018509	trnau1apb	97	77.824	Periophthalmus_magnuspinnatus
ENSPMEG00000012743	trnau1apb	100	100.000	ENSPFOG00000003938	trnau1apb	100	100.000	Poecilia_formosa
ENSPMEG00000012743	trnau1apb	100	100.000	ENSPLAG00000015480	trnau1apb	100	100.000	Poecilia_latipinna
ENSPMEG00000012743	trnau1apb	100	97.093	ENSPREG00000015035	trnau1apb	100	97.093	Poecilia_reticulata
ENSPMEG00000012743	trnau1apb	99	75.358	ENSPNYG00000012127	trnau1apb	100	75.072	Pundamilia_nyererei
ENSPMEG00000012743	trnau1apb	99	60.286	ENSPNAG00000019138	trnau1apb	98	61.988	Pygocentrus_nattereri
ENSPMEG00000012743	trnau1apb	99	59.091	ENSSFOG00015014158	trnau1apb	99	60.845	Scleropages_formosus
ENSPMEG00000012743	trnau1apb	99	79.360	ENSSMAG00000001745	trnau1apb	99	79.651	Scophthalmus_maximus
ENSPMEG00000012743	trnau1apb	99	83.478	ENSSDUG00000011109	trnau1apb	99	81.844	Seriola_dumerili
ENSPMEG00000012743	trnau1apb	99	83.188	ENSSLDG00000012947	trnau1apb	99	81.268	Seriola_lalandi_dorsalis
ENSPMEG00000012743	trnau1apb	71	33.948	ENSSPUG00000016701	-	82	36.260	Sphenodon_punctatus
ENSPMEG00000012743	trnau1apb	99	84.971	ENSSPAG00000006917	trnau1apb	100	83.908	Stegastes_partitus
ENSPMEG00000012743	trnau1apb	100	76.012	ENSTRUG00000008608	trnau1apb	100	76.945	Takifugu_rubripes
ENSPMEG00000012743	trnau1apb	99	66.276	ENSTNIG00000000916	trnau1apb	100	65.689	Tetraodon_nigroviridis
ENSPMEG00000012743	trnau1apb	94	84.877	ENSXCOG00000007974	trnau1apb	94	84.877	Xiphophorus_couchianus
ENSPMEG00000012743	trnau1apb	100	98.256	ENSXMAG00000029918	trnau1apb	100	98.256	Xiphophorus_maculatus