EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000012932 (Gene tree)
Gene ID: 106908292
Gene Symbol: si:dkey-34d22.5
Alias: -
Full Name: RAB42%2C member RAS oncogene family
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 48102 bases
Position: chrKQ550989.1:553692-601793
Accession: 106908292
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000010929	MMR_HSR1	PF01926.23	5.4e-05	1	1
ENSPMEP00000010927	MMR_HSR1	PF01926.23	7.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000031194	-	3409	XM_014974384	ENSPMEP00000010929	222 (aa)	XP_014829870	UPI0004438B24
ENSPMET00000017918	-	2866	-	ENSPMEP00000010927	259 (aa)	-	-

Gene Model

Click here to download ENSPMEG00000012932's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000012932's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000012932	si:dkey-34d22.5	86	60.000	ENSPMEG00000019497	rab42a	86	60.000
ENSPMEG00000012932	si:dkey-34d22.5	76	42.012	ENSPMEG00000008020	-	83	42.012
ENSPMEG00000012932	si:dkey-34d22.5	80	37.234	ENSPMEG00000013734	rab9b	83	37.766
ENSPMEG00000012932	si:dkey-34d22.5	75	44.910	ENSPMEG00000008223	rab18b	80	44.910
ENSPMEG00000012932	si:dkey-34d22.5	91	33.333	ENSPMEG00000021641	-	94	33.333
ENSPMEG00000012932	si:dkey-34d22.5	51	39.823	ENSPMEG00000017927	RRAS2	78	39.823
ENSPMEG00000012932	si:dkey-34d22.5	97	39.352	ENSPMEG00000021947	rab35b	98	39.352
ENSPMEG00000012932	si:dkey-34d22.5	76	42.262	ENSPMEG00000000408	RAB15	78	42.262
ENSPMEG00000012932	si:dkey-34d22.5	75	43.114	ENSPMEG00000009701	rab30	80	43.114
ENSPMEG00000012932	si:dkey-34d22.5	75	36.145	ENSPMEG00000007238	rab5aa	75	36.145
ENSPMEG00000012932	si:dkey-34d22.5	74	44.242	ENSPMEG00000017161	-	66	44.242
ENSPMEG00000012932	si:dkey-34d22.5	72	34.591	ENSPMEG00000000572	rras	79	34.591
ENSPMEG00000012932	si:dkey-34d22.5	51	39.823	ENSPMEG00000010573	-	78	39.823
ENSPMEG00000012932	si:dkey-34d22.5	98	50.917	ENSPMEG00000007976	-	98	50.917
ENSPMEG00000012932	si:dkey-34d22.5	95	33.649	ENSPMEG00000013297	rab34b	80	33.649
ENSPMEG00000012932	si:dkey-34d22.5	77	38.012	ENSPMEG00000000804	rab11al	77	38.012
ENSPMEG00000012932	si:dkey-34d22.5	92	33.014	ENSPMEG00000004392	RAB7A	95	33.014
ENSPMEG00000012932	si:dkey-34d22.5	80	34.831	ENSPMEG00000005491	rab25a	82	34.831
ENSPMEG00000012932	si:dkey-34d22.5	67	40.667	ENSPMEG00000010152	zgc:101559	63	40.667
ENSPMEG00000012932	si:dkey-34d22.5	70	31.410	ENSPMEG00000012042	si:ch73-116o1.2	79	30.952
ENSPMEG00000012932	si:dkey-34d22.5	71	34.177	ENSPMEG00000020579	rhebl1	84	34.177
ENSPMEG00000012932	si:dkey-34d22.5	98	50.917	ENSPMEG00000004946	RAB39B	98	50.917
ENSPMEG00000012932	si:dkey-34d22.5	78	33.908	ENSPMEG00000002086	rab34a	65	33.908
ENSPMEG00000012932	si:dkey-34d22.5	71	33.121	ENSPMEG00000014302	rheb	84	33.121
ENSPMEG00000012932	si:dkey-34d22.5	71	36.646	ENSPMEG00000019159	si:dkey-13a21.4	77	36.646
ENSPMEG00000012932	si:dkey-34d22.5	72	40.373	ENSPMEG00000010417	rab12	64	40.373
ENSPMEG00000012932	si:dkey-34d22.5	76	41.420	ENSPMEG00000005288	-	85	40.341
ENSPMEG00000012932	si:dkey-34d22.5	76	42.012	ENSPMEG00000022988	-	83	42.012
ENSPMEG00000012932	si:dkey-34d22.5	71	37.580	ENSPMEG00000017300	rab23	75	36.478
ENSPMEG00000012932	si:dkey-34d22.5	75	35.542	ENSPMEG00000003743	rab22a	84	35.542
ENSPMEG00000012932	si:dkey-34d22.5	75	36.747	ENSPMEG00000011336	rab5c	90	32.710
ENSPMEG00000012932	si:dkey-34d22.5	76	41.420	ENSPMEG00000003046	rab1ab	85	40.341
ENSPMEG00000012932	si:dkey-34d22.5	70	32.903	ENSPMEG00000019525	KRAS	98	31.217
ENSPMEG00000012932	si:dkey-34d22.5	97	34.404	ENSPMEG00000007932	rab11a	95	34.404
ENSPMEG00000012932	si:dkey-34d22.5	53	40.336	ENSPMEG00000018380	rras2	70	40.336
ENSPMEG00000012932	si:dkey-34d22.5	74	43.195	ENSPMEG00000010190	RAB9A	76	43.195
ENSPMEG00000012932	si:dkey-34d22.5	78	32.759	ENSPMEG00000020891	hrasb	88	32.749
ENSPMEG00000012932	si:dkey-34d22.5	78	41.040	ENSPMEG00000022350	zgc:171927	82	41.040
ENSPMEG00000012932	si:dkey-34d22.5	78	31.461	ENSPMEG00000021807	RAB29	83	31.461
ENSPMEG00000012932	si:dkey-34d22.5	75	31.548	ENSPMEG00000011210	si:cabz01085950.1	82	31.548
ENSPMEG00000012932	si:dkey-34d22.5	71	33.333	ENSPMEG00000018256	dnajc27	59	32.927
ENSPMEG00000012932	si:dkey-34d22.5	72	34.756	ENSPMEG00000015292	rab36	91	34.756
ENSPMEG00000012932	si:dkey-34d22.5	97	41.935	ENSPMEG00000006424	-	97	41.935
ENSPMEG00000012932	si:dkey-34d22.5	75	35.119	ENSPMEG00000004703	rabl2	72	35.119
ENSPMEG00000012932	si:dkey-34d22.5	97	40.553	ENSPMEG00000010857	rab14	96	40.553
ENSPMEG00000012932	si:dkey-34d22.5	77	38.824	ENSPMEG00000003369	rab6a	78	38.824
ENSPMEG00000012932	si:dkey-34d22.5	74	41.420	ENSPMEG00000023735	rab9a	85	40.341
ENSPMEG00000012932	si:dkey-34d22.5	75	36.145	ENSPMEG00000012614	-	73	36.145
ENSPMEG00000012932	si:dkey-34d22.5	90	36.453	ENSPMEG00000019167	rab6ba	94	36.453
ENSPMEG00000012932	si:dkey-34d22.5	82	35.359	ENSPMEG00000012389	rab11bb	84	35.359
ENSPMEG00000012932	si:dkey-34d22.5	80	37.234	ENSPMEG00000024399	rab9b	83	37.766
ENSPMEG00000012932	si:dkey-34d22.5	85	37.629	ENSPMEG00000003177	rab33a	68	37.629
ENSPMEG00000012932	si:dkey-34d22.5	75	30.769	ENSPMEG00000003690	-	79	30.769
ENSPMEG00000012932	si:dkey-34d22.5	75	43.713	ENSPMEG00000013085	rab18a	80	43.713
ENSPMEG00000012932	si:dkey-34d22.5	77	38.824	ENSPMEG00000021872	rab6bb	78	38.824
ENSPMEG00000012932	si:dkey-34d22.5	97	33.484	ENSPMEG00000007917	rab11ba	72	33.484
ENSPMEG00000012932	si:dkey-34d22.5	75	30.357	ENSPMEG00000021391	rasd4	77	30.994
ENSPMEG00000012932	si:dkey-34d22.5	79	39.205	ENSPMEG00000002054	rab1ba	86	39.205
ENSPMEG00000012932	si:dkey-34d22.5	74	44.848	ENSPMEG00000021986	rab15	76	44.848
ENSPMEG00000012932	si:dkey-34d22.5	85	38.298	ENSPMEG00000012205	rab4a	86	38.298
ENSPMEG00000012932	si:dkey-34d22.5	74	44.242	ENSPMEG00000002564	-	66	44.242
ENSPMEG00000012932	si:dkey-34d22.5	87	30.392	ENSPMEG00000018145	rasl11a	77	30.392
ENSPMEG00000012932	si:dkey-34d22.5	97	33.032	ENSPMEG00000007842	-	95	33.032
ENSPMEG00000012932	si:dkey-34d22.5	69	40.385	ENSPMEG00000022709	rab33ba	61	41.447
ENSPMEG00000012932	si:dkey-34d22.5	77	39.227	ENSPMEG00000019646	-	75	39.227
ENSPMEG00000012932	si:dkey-34d22.5	77	40.000	ENSPMEG00000014170	rab41	77	40.000
ENSPMEG00000012932	si:dkey-34d22.5	97	32.870	ENSPMEG00000001400	rab25b	96	32.870
ENSPMEG00000012932	si:dkey-34d22.5	77	41.860	ENSPMEG00000007165	si:dkey-16l2.16	80	41.860

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000012932	si:dkey-34d22.5	100	87.387	ENSACIG00000016958	si:dkey-34d22.5	100	87.387	Amphilophus_citrinellus
ENSPMEG00000012932	si:dkey-34d22.5	100	85.586	ENSATEG00000010784	si:dkey-34d22.5	87	85.268	Anabas_testudineus
ENSPMEG00000012932	si:dkey-34d22.5	89	63.452	ENSCPBG00000011236	-	90	63.452	Chrysemys_picta_bellii
ENSPMEG00000012932	si:dkey-34d22.5	100	74.324	ENSCSEG00000019183	si:dkey-34d22.5	100	74.324	Cynoglossus_semilaevis
ENSPMEG00000012932	si:dkey-34d22.5	100	91.892	ENSCVAG00000017064	si:dkey-34d22.5	100	91.892	Cyprinodon_variegatus
ENSPMEG00000012932	si:dkey-34d22.5	83	49.189	ENSDARG00000100379	si:dkey-34d22.2	99	49.189	Danio_rerio
ENSPMEG00000012932	si:dkey-34d22.5	97	57.407	ENSFALG00000001373	-	97	57.407	Ficedula_albicollis
ENSPMEG00000012932	si:dkey-34d22.5	100	92.825	ENSFHEG00000012041	si:dkey-34d22.5	100	92.825	Fundulus_heteroclitus
ENSPMEG00000012932	si:dkey-34d22.5	86	61.458	ENSGALG00000000994	-	90	61.458	Gallus_gallus
ENSPMEG00000012932	si:dkey-34d22.5	100	97.748	ENSGAFG00000008183	si:dkey-34d22.5	100	97.748	Gambusia_affinis
ENSPMEG00000012932	si:dkey-34d22.5	94	57.212	ENSGAGG00000004918	-	100	57.212	Gopherus_agassizii
ENSPMEG00000012932	si:dkey-34d22.5	99	73.756	ENSHCOG00000015692	si:dkey-34d22.5	99	73.756	Hippocampus_comes
ENSPMEG00000012932	si:dkey-34d22.5	100	87.387	ENSKMAG00000012778	si:dkey-34d22.5	100	87.387	Kryptolebias_marmoratus
ENSPMEG00000012932	si:dkey-34d22.5	99	81.900	ENSLBEG00000002926	si:dkey-34d22.5	100	81.900	Labrus_bergylta
ENSPMEG00000012932	si:dkey-34d22.5	98	58.716	ENSLACG00000012674	si:dkey-34d22.5	99	58.716	Latimeria_chalumnae
ENSPMEG00000012932	si:dkey-34d22.5	98	67.281	ENSLOCG00000003467	si:dkey-34d22.5	98	70.507	Lepisosteus_oculatus
ENSPMEG00000012932	si:dkey-34d22.5	100	80.180	ENSMMOG00000006846	si:dkey-34d22.5	100	80.180	Mola_mola
ENSPMEG00000012932	si:dkey-34d22.5	100	81.982	ENSMALG00000013152	si:dkey-34d22.5	100	81.982	Monopterus_albus
ENSPMEG00000012932	si:dkey-34d22.5	99	85.973	ENSORLG00000014099	si:dkey-34d22.5	99	85.973	Oryzias_latipes
ENSPMEG00000012932	si:dkey-34d22.5	99	85.520	ENSORLG00020020277	si:dkey-34d22.5	99	85.520	Oryzias_latipes_hni
ENSPMEG00000012932	si:dkey-34d22.5	99	85.520	ENSORLG00015000142	si:dkey-34d22.5	99	85.520	Oryzias_latipes_hsok
ENSPMEG00000012932	si:dkey-34d22.5	91	91.089	ENSOMEG00000017958	si:dkey-34d22.5	99	87.783	Oryzias_melastigma
ENSPMEG00000012932	si:dkey-34d22.5	97	73.148	ENSPKIG00000021209	si:dkey-34d22.5	99	73.148	Paramormyrops_kingsleyae
ENSPMEG00000012932	si:dkey-34d22.5	91	61.692	ENSPSIG00000006606	-	99	61.692	Pelodiscus_sinensis
ENSPMEG00000012932	si:dkey-34d22.5	99	82.805	ENSPMGG00000001298	-	99	82.805	Periophthalmus_magnuspinnatus
ENSPMEG00000012932	si:dkey-34d22.5	89	59.898	ENSPCIG00000022399	-	88	59.898	Phascolarctos_cinereus
ENSPMEG00000012932	si:dkey-34d22.5	100	100.000	ENSPFOG00000014499	si:dkey-34d22.5	100	100.000	Poecilia_formosa
ENSPMEG00000012932	si:dkey-34d22.5	100	100.000	ENSPLAG00000007773	si:dkey-34d22.5	100	100.000	Poecilia_latipinna
ENSPMEG00000012932	si:dkey-34d22.5	89	59.391	ENSSHAG00000008520	-	88	59.391	Sarcophilus_harrisii
ENSPMEG00000012932	si:dkey-34d22.5	97	68.837	ENSSFOG00015012088	rab42	98	68.349	Scleropages_formosus
ENSPMEG00000012932	si:dkey-34d22.5	100	87.838	ENSSLDG00000002646	si:dkey-34d22.5	100	87.838	Seriola_lalandi_dorsalis
ENSPMEG00000012932	si:dkey-34d22.5	99	87.783	ENSSPAG00000012955	si:dkey-34d22.5	99	87.783	Stegastes_partitus
ENSPMEG00000012932	si:dkey-34d22.5	93	48.544	ENSXETG00000020622	rab39a	98	48.544	Xenopus_tropicalis
ENSPMEG00000012932	si:dkey-34d22.5	100	96.847	ENSXCOG00000008410	si:dkey-34d22.5	100	96.847	Xiphophorus_couchianus
ENSPMEG00000012932	si:dkey-34d22.5	100	96.847	ENSXMAG00000029317	si:dkey-34d22.5	100	96.847	Xiphophorus_maculatus