EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000012946 (Gene tree)
Gene ID: 106920747
Gene Symbol: tnrc6c2
Alias: -
Full Name: trinucleotide repeat-containing gene 6C protein-like
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 36567 bases
Position: chrKQ551427.1:78312-114878
Accession: 106920747
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000027889	RRM_1	PF00076.22	0.00014	1	1
ENSPMEP00000027909	RRM_1	PF00076.22	0.00016	1	1
ENSPMEP00000010671	RRM_1	PF00076.22	0.00018	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000031082	-	6213	XM_014991953	ENSPMEP00000010671	1872 (aa)	XP_014847439	UPI00072EBE3C
ENSPMET00000017547	-	4638	-	ENSPMEP00000027889	1545 (aa)	-	-
ENSPMET00000017569	-	5820	XM_014991954	ENSPMEP00000027909	1741 (aa)	XP_014847440	UPI00072E021D

Gene Model

Click here to download ENSPMEG00000012946's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000012946's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000012946	tnrc6c2	98	84.274	ENSAOCG00000017648	tnrc6c2	99	82.440	Amphiprion_ocellaris
ENSPMEG00000012946	tnrc6c2	100	76.235	ENSATEG00000003656	tnrc6c2	100	76.358	Anabas_testudineus
ENSPMEG00000012946	tnrc6c2	98	83.324	ENSACLG00000006469	tnrc6c2	99	82.095	Astatotilapia_calliptera
ENSPMEG00000012946	tnrc6c2	100	56.257	ENSAMXG00000009579	tnrc6c2	100	58.724	Astyanax_mexicanus
ENSPMEG00000012946	tnrc6c2	100	57.015	ENSDARG00000103851	tnrc6c2	100	57.211	Danio_rerio
ENSPMEG00000012946	tnrc6c2	95	58.854	ENSELUG00000008149	-	83	71.693	Esox_lucius
ENSPMEG00000012946	tnrc6c2	100	63.365	ENSELUG00000007206	tnrc6c2	99	63.126	Esox_lucius
ENSPMEG00000012946	tnrc6c2	99	90.856	ENSFHEG00000003901	tnrc6c2	100	91.958	Fundulus_heteroclitus
ENSPMEG00000012946	tnrc6c2	98	73.291	ENSGACG00000019401	tnrc6c2	100	72.267	Gasterosteus_aculeatus
ENSPMEG00000012946	tnrc6c2	98	83.324	ENSHBUG00000018310	tnrc6c2	99	82.105	Haplochromis_burtoni
ENSPMEG00000012946	tnrc6c2	99	74.758	ENSHCOG00000017802	tnrc6c2	99	73.553	Hippocampus_comes
ENSPMEG00000012946	tnrc6c2	100	52.508	ENSIPUG00000022767	tnrc6c2	100	52.622	Ictalurus_punctatus
ENSPMEG00000012946	tnrc6c2	93	82.727	ENSMAMG00000001718	tnrc6c2	100	82.545	Mastacembelus_armatus
ENSPMEG00000012946	tnrc6c2	98	83.381	ENSMZEG00005023905	tnrc6c2	99	82.149	Maylandia_zebra
ENSPMEG00000012946	tnrc6c2	100	86.402	ENSMALG00000020932	tnrc6c2	100	83.062	Monopterus_albus
ENSPMEG00000012946	tnrc6c2	100	77.805	ENSNBRG00000000452	tnrc6c2	100	77.461	Neolamprologus_brichardi
ENSPMEG00000012946	tnrc6c2	97	79.661	ENSONIG00000018123	tnrc6c2	100	82.571	Oreochromis_niloticus
ENSPMEG00000012946	tnrc6c2	99	81.319	ENSORLG00000003327	tnrc6c2	99	79.637	Oryzias_latipes
ENSPMEG00000012946	tnrc6c2	100	80.021	ENSORLG00020010730	tnrc6c2	99	79.530	Oryzias_latipes_hni
ENSPMEG00000012946	tnrc6c2	100	80.647	ENSORLG00015009232	tnrc6c2	99	80.642	Oryzias_latipes_hsok
ENSPMEG00000012946	tnrc6c2	100	80.902	ENSOMEG00000017952	tnrc6c2	99	80.792	Oryzias_melastigma
ENSPMEG00000012946	tnrc6c2	94	95.102	ENSPFOG00000011590	tnrc6c2	99	94.894	Poecilia_formosa
ENSPMEG00000012946	tnrc6c2	100	98.337	ENSPLAG00000006992	tnrc6c2	100	98.337	Poecilia_latipinna
ENSPMEG00000012946	tnrc6c2	100	93.881	ENSPREG00000015823	tnrc6c2	100	94.073	Poecilia_reticulata
ENSPMEG00000012946	tnrc6c2	93	83.920	ENSPNYG00000002582	tnrc6c2	100	83.879	Pundamilia_nyererei
ENSPMEG00000012946	tnrc6c2	100	54.961	ENSPNAG00000026838	tnrc6c2	100	58.084	Pygocentrus_nattereri
ENSPMEG00000012946	tnrc6c2	93	81.741	ENSSMAG00000015145	tnrc6c2	100	81.258	Scophthalmus_maximus
ENSPMEG00000012946	tnrc6c2	93	84.821	ENSSDUG00000020741	tnrc6c2	100	84.578	Seriola_dumerili
ENSPMEG00000012946	tnrc6c2	93	84.699	ENSSLDG00000002077	tnrc6c2	100	84.457	Seriola_lalandi_dorsalis
ENSPMEG00000012946	tnrc6c2	98	85.360	ENSSPAG00000013052	tnrc6c2	99	83.811	Stegastes_partitus
ENSPMEG00000012946	tnrc6c2	89	83.279	ENSTNIG00000004178	tnrc6c2	94	82.842	Tetraodon_nigroviridis
ENSPMEG00000012946	tnrc6c2	100	92.183	ENSXCOG00000013252	tnrc6c2	100	92.183	Xiphophorus_couchianus
ENSPMEG00000012946	tnrc6c2	100	95.042	ENSXMAG00000006739	tnrc6c2	100	97.604	Xiphophorus_maculatus