EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000013878 (Gene tree)
Gene ID: 106933325
Gene Symbol: cirbpa
Alias: -
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 3898 bases
Position: chrKQ552590.1:92738-96635
Accession: 106933325
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000011771	RRM_1	PF00076.22	9.5e-26	1	1
ENSPMEP00000028655	RRM_1	PF00076.22	9.5e-26	1	1
ENSPMEP00000011767	RRM_1	PF00076.22	9.8e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000019004	-	770	XM_015012492	ENSPMEP00000011771	183 (aa)	XP_014867978	UPI0004443897
ENSPMET00000019005	-	692	-	ENSPMEP00000028655	183 (aa)	-	UPI0005148D78
ENSPMET00000019003	-	705	XM_015012490	ENSPMEP00000011767	186 (aa)	XP_014867976	UPI0004438617

Gene Model

Click here to download ENSPMEG00000013878's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000013878's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000013878	cirbpa	57	34.286	ENSPMEG00000018372	ncbp2	59	37.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000013878	cirbpa	73	84.962	ENSAPOG00000004458	cirbpa	72	84.328	Acanthochromis_polyacanthus
ENSPMEG00000013878	cirbpa	100	80.000	ENSACIG00000016116	cirbpa	100	79.255	Amphilophus_citrinellus
ENSPMEG00000013878	cirbpa	100	77.174	ENSAOCG00000016212	cirbpa	100	73.196	Amphiprion_ocellaris
ENSPMEG00000013878	cirbpa	100	80.000	ENSAPEG00000011989	cirbpa	100	74.869	Amphiprion_percula
ENSPMEG00000013878	cirbpa	100	85.246	ENSATEG00000014985	cirbpa	100	79.570	Anabas_testudineus
ENSPMEG00000013878	cirbpa	100	84.324	ENSACLG00000002094	-	100	81.081	Astatotilapia_calliptera
ENSPMEG00000013878	cirbpa	100	55.288	ENSAMXG00000015612	cirbpb	84	56.863	Astyanax_mexicanus
ENSPMEG00000013878	cirbpa	100	68.718	ENSCSEG00000014344	cirbpa	100	72.308	Cynoglossus_semilaevis
ENSPMEG00000013878	cirbpa	100	88.172	ENSCVAG00000004853	cirbpa	100	88.172	Cyprinodon_variegatus
ENSPMEG00000013878	cirbpa	100	81.522	ENSFHEG00000002580	cirbpa	100	83.871	Fundulus_heteroclitus
ENSPMEG00000013878	cirbpa	100	58.673	ENSGMOG00000007179	cirbpb	98	49.261	Gadus_morhua
ENSPMEG00000013878	cirbpa	100	96.277	ENSGAFG00000008654	cirbpa	100	90.323	Gambusia_affinis
ENSPMEG00000013878	cirbpa	100	68.063	ENSGACG00000015206	cirbpa	100	71.579	Gasterosteus_aculeatus
ENSPMEG00000013878	cirbpa	100	84.574	ENSHBUG00000022060	cirbpa	100	81.383	Haplochromis_burtoni
ENSPMEG00000013878	cirbpa	100	71.354	ENSKMAG00000005905	cirbpa	100	70.492	Kryptolebias_marmoratus
ENSPMEG00000013878	cirbpa	100	65.285	ENSLBEG00000000292	cirbpa	100	63.441	Labrus_bergylta
ENSPMEG00000013878	cirbpa	100	82.796	ENSMAMG00000010168	cirbpa	100	80.645	Mastacembelus_armatus
ENSPMEG00000013878	cirbpa	100	84.574	ENSMZEG00005025577	-	100	81.383	Maylandia_zebra
ENSPMEG00000013878	cirbpa	100	82.514	ENSMALG00000020092	cirbpa	100	84.409	Monopterus_albus
ENSPMEG00000013878	cirbpa	100	84.574	ENSNBRG00000019658	cirbpa	100	81.383	Neolamprologus_brichardi
ENSPMEG00000013878	cirbpa	100	80.000	ENSONIG00000010169	cirbpa	100	78.723	Oreochromis_niloticus
ENSPMEG00000013878	cirbpa	100	85.484	ENSORLG00000015433	cirbpa	100	81.383	Oryzias_latipes
ENSPMEG00000013878	cirbpa	100	85.484	ENSORLG00020016909	cirbpa	100	81.383	Oryzias_latipes_hni
ENSPMEG00000013878	cirbpa	100	85.484	ENSORLG00015016636	cirbpa	100	81.383	Oryzias_latipes_hsok
ENSPMEG00000013878	cirbpa	100	85.792	ENSOMEG00000021469	cirbpa	73	82.796	Oryzias_melastigma
ENSPMEG00000013878	cirbpa	99	76.757	ENSPMGG00000017342	cirbpa	95	73.016	Periophthalmus_magnuspinnatus
ENSPMEG00000013878	cirbpa	100	100.000	ENSPFOG00000015653	cirbpa	100	100.000	Poecilia_formosa
ENSPMEG00000013878	cirbpa	100	100.000	ENSPLAG00000011125	cirbpa	100	100.000	Poecilia_latipinna
ENSPMEG00000013878	cirbpa	100	98.361	ENSPREG00000018042	cirbpa	97	94.536	Poecilia_reticulata
ENSPMEG00000013878	cirbpa	100	84.574	ENSPNYG00000007198	-	100	81.383	Pundamilia_nyererei
ENSPMEG00000013878	cirbpa	100	56.796	ENSPNAG00000019997	cirbpb	98	60.914	Pygocentrus_nattereri
ENSPMEG00000013878	cirbpa	100	60.847	ENSSFOG00015005346	cirbpb	100	67.016	Scleropages_formosus
ENSPMEG00000013878	cirbpa	100	72.727	ENSSMAG00000002412	cirbpa	100	72.222	Scophthalmus_maximus
ENSPMEG00000013878	cirbpa	100	65.027	ENSSDUG00000016099	cirbpa	100	63.452	Seriola_dumerili
ENSPMEG00000013878	cirbpa	100	70.652	ENSSPAG00000023037	cirbpa	98	67.760	Stegastes_partitus
ENSPMEG00000013878	cirbpa	100	72.043	ENSTRUG00000010187	cirbpa	100	69.892	Takifugu_rubripes
ENSPMEG00000013878	cirbpa	100	76.344	ENSTNIG00000000450	cirbpa	100	76.344	Tetraodon_nigroviridis
ENSPMEG00000013878	cirbpa	100	97.268	ENSXCOG00000008262	cirbpa	98	93.443	Xiphophorus_couchianus
ENSPMEG00000013878	cirbpa	100	97.312	ENSXMAG00000019336	cirbpa	100	93.548	Xiphophorus_maculatus