EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000014105 (Gene tree)
Gene ID: 106919454
Gene Symbol: smg5
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 15580 bases
Position: chrKQ551344.1:104321-119900
Accession: 106919454
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000011888	EST1	PF10374.9	5.1e-24	1	1
ENSPMEP00000011905	EST1	PF10374.9	5.7e-24	1	1
ENSPMEP00000011905	EST1_DNA_bind	PF10373.9	2.7e-42	1	1
ENSPMEP00000011888	EST1_DNA_bind	PF10373.9	4.6e-41	1	1
ENSPMEP00000011888	PIN_4	PF13638.6	3.1e-06	1	1
ENSPMEP00000011905	PIN_4	PF13638.6	1.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000019179	-	5089	XM_014989825	ENSPMEP00000011905	1113 (aa)	XP_014845311	UPI00072DCDD5
ENSPMET00000019151	-	3084	-	ENSPMEP00000011888	1027 (aa)	-	-

Gene Model

Click here to download ENSPMEG00000014105's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000014105's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000014105	smg5	99	65.322	ENSG00000198952	SMG5	99	65.706	Homo_sapiens
ENSPMEG00000014105	smg5	100	88.820	ENSAPOG00000019690	smg5	100	88.287	Acanthochromis_polyacanthus
ENSPMEG00000014105	smg5	98	64.460	ENSAMEG00000014458	SMG5	91	77.363	Ailuropoda_melanoleuca
ENSPMEG00000014105	smg5	99	88.900	ENSACIG00000001353	smg5	99	89.093	Amphilophus_citrinellus
ENSPMEG00000014105	smg5	100	88.780	ENSAOCG00000019483	smg5	100	88.869	Amphiprion_ocellaris
ENSPMEG00000014105	smg5	100	88.602	ENSAPEG00000022949	smg5	100	88.869	Amphiprion_percula
ENSPMEG00000014105	smg5	100	86.744	ENSATEG00000005348	smg5	100	86.643	Anabas_testudineus
ENSPMEG00000014105	smg5	98	65.318	ENSAPLG00000010263	SMG5	100	64.672	Anas_platyrhynchos
ENSPMEG00000014105	smg5	99	65.392	ENSANAG00000032899	SMG5	93	75.792	Aotus_nancymaae
ENSPMEG00000014105	smg5	100	87.300	ENSACLG00000009311	smg5	100	87.744	Astatotilapia_calliptera
ENSPMEG00000014105	smg5	100	78.514	ENSAMXG00000024616	smg5	100	78.591	Astyanax_mexicanus
ENSPMEG00000014105	smg5	99	66.031	ENSBTAG00000009435	SMG5	99	65.769	Bos_taurus
ENSPMEG00000014105	smg5	90	50.608	ENSBTAG00000021747	-	92	50.608	Bos_taurus
ENSPMEG00000014105	smg5	99	65.488	ENSCJAG00000005684	SMG5	99	65.802	Callithrix_jacchus
ENSPMEG00000014105	smg5	99	65.377	ENSCAFG00000016839	SMG5	93	75.744	Canis_familiaris
ENSPMEG00000014105	smg5	99	65.377	ENSCAFG00020006061	SMG5	93	75.744	Canis_lupus_dingo
ENSPMEG00000014105	smg5	99	39.461	ENSCHIG00000006323	-	93	50.868	Capra_hircus
ENSPMEG00000014105	smg5	99	65.679	ENSCHIG00000007709	SMG5	99	65.865	Capra_hircus
ENSPMEG00000014105	smg5	99	65.996	ENSTSYG00000004099	SMG5	99	65.739	Carlito_syrichta
ENSPMEG00000014105	smg5	94	49.849	ENSCAPG00000003631	SMG5	100	51.266	Cavia_aperea
ENSPMEG00000014105	smg5	99	65.043	ENSCPOG00000015696	SMG5	99	66.027	Cavia_porcellus
ENSPMEG00000014105	smg5	99	65.488	ENSCCAG00000027409	SMG5	99	65.802	Cebus_capucinus
ENSPMEG00000014105	smg5	99	65.322	ENSCATG00000030539	SMG5	99	65.706	Cercocebus_atys
ENSPMEG00000014105	smg5	99	65.772	ENSCLAG00000003983	SMG5	99	66.186	Chinchilla_lanigera
ENSPMEG00000014105	smg5	99	65.322	ENSCSAG00000002120	SMG5	99	65.706	Chlorocebus_sabaeus
ENSPMEG00000014105	smg5	53	75.451	ENSCHOG00000008741	-	57	75.451	Choloepus_hoffmanni
ENSPMEG00000014105	smg5	94	65.431	ENSCPBG00000025848	SMG5	100	64.688	Chrysemys_picta_bellii
ENSPMEG00000014105	smg5	72	38.060	ENSCING00000008706	-	83	38.060	Ciona_intestinalis
ENSPMEG00000014105	smg5	99	62.991	ENSCANG00000029208	SMG5	99	62.668	Colobus_angolensis_palliatus
ENSPMEG00000014105	smg5	99	65.992	ENSCGRG00001006336	Smg5	99	65.767	Cricetulus_griseus_chok1gshd
ENSPMEG00000014105	smg5	98	65.882	ENSCGRG00000005111	Smg5	100	65.815	Cricetulus_griseus_crigri
ENSPMEG00000014105	smg5	100	82.992	ENSCSEG00000014220	smg5	100	83.066	Cynoglossus_semilaevis
ENSPMEG00000014105	smg5	100	82.816	ENSCVAG00000000529	smg5	100	82.816	Cyprinodon_variegatus
ENSPMEG00000014105	smg5	100	77.847	ENSDARG00000041481	smg5	100	78.073	Danio_rerio
ENSPMEG00000014105	smg5	92	32.915	ENSDNOG00000039862	-	99	36.790	Dasypus_novemcinctus
ENSPMEG00000014105	smg5	88	78.836	ENSDNOG00000000051	SMG5	93	69.074	Dasypus_novemcinctus
ENSPMEG00000014105	smg5	99	66.603	ENSDORG00000010382	Smg5	99	66.315	Dipodomys_ordii
ENSPMEG00000014105	smg5	76	84.466	ENSETEG00000010336	SMG5	83	84.466	Echinops_telfairi
ENSPMEG00000014105	smg5	91	44.831	ENSEBUG00000003739	smg5	88	53.465	Eptatretus_burgeri
ENSPMEG00000014105	smg5	99	66.061	ENSEASG00005019122	SMG5	99	66.315	Equus_asinus_asinus
ENSPMEG00000014105	smg5	99	65.966	ENSECAG00000001389	SMG5	99	66.315	Equus_caballus
ENSPMEG00000014105	smg5	71	79.155	ENSEEUG00000012690	SMG5	74	78.249	Erinaceus_europaeus
ENSPMEG00000014105	smg5	100	80.371	ENSELUG00000012585	smg5	99	80.424	Esox_lucius
ENSPMEG00000014105	smg5	99	65.736	ENSFCAG00000011783	SMG5	93	75.000	Felis_catus
ENSPMEG00000014105	smg5	58	67.152	ENSFALG00000001166	-	96	67.330	Ficedula_albicollis
ENSPMEG00000014105	smg5	98	65.561	ENSFDAG00000017388	SMG5	100	65.426	Fukomys_damarensis
ENSPMEG00000014105	smg5	86	94.286	ENSFHEG00000013939	smg5	94	94.286	Fundulus_heteroclitus
ENSPMEG00000014105	smg5	100	76.491	ENSGMOG00000007310	smg5	100	77.078	Gadus_morhua
ENSPMEG00000014105	smg5	99	66.982	ENSGALG00000029918	-	99	65.975	Gallus_gallus
ENSPMEG00000014105	smg5	93	96.805	ENSGAFG00000021691	smg5	99	96.805	Gambusia_affinis
ENSPMEG00000014105	smg5	100	84.765	ENSGACG00000013142	smg5	100	83.968	Gasterosteus_aculeatus
ENSPMEG00000014105	smg5	99	66.258	ENSGAGG00000016131	SMG5	99	65.817	Gopherus_agassizii
ENSPMEG00000014105	smg5	99	65.130	ENSGGOG00000010932	SMG5	99	65.514	Gorilla_gorilla
ENSPMEG00000014105	smg5	100	87.378	ENSHBUG00000008654	smg5	100	88.000	Haplochromis_burtoni
ENSPMEG00000014105	smg5	99	65.330	ENSHGLG00000019152	SMG5	99	64.813	Heterocephalus_glaber_female
ENSPMEG00000014105	smg5	90	65.996	ENSHGLG00100015948	SMG5	99	65.426	Heterocephalus_glaber_male
ENSPMEG00000014105	smg5	92	83.051	ENSHCOG00000010229	smg5	94	83.051	Hippocampus_comes
ENSPMEG00000014105	smg5	100	77.382	ENSIPUG00000006624	Smg5	100	76.549	Ictalurus_punctatus
ENSPMEG00000014105	smg5	99	65.744	ENSSTOG00000001780	SMG5	99	65.739	Ictidomys_tridecemlineatus
ENSPMEG00000014105	smg5	99	65.709	ENSJJAG00000022763	Smg5	99	65.517	Jaculus_jaculus
ENSPMEG00000014105	smg5	100	89.413	ENSKMAG00000014586	smg5	100	89.680	Kryptolebias_marmoratus
ENSPMEG00000014105	smg5	100	86.988	ENSLBEG00000002145	smg5	100	87.166	Labrus_bergylta
ENSPMEG00000014105	smg5	99	59.546	ENSLACG00000010521	SMG5	99	60.076	Latimeria_chalumnae
ENSPMEG00000014105	smg5	96	84.507	ENSLOCG00000008380	smg5	99	72.458	Lepisosteus_oculatus
ENSPMEG00000014105	smg5	100	64.756	ENSLAFG00000006241	SMG5	100	65.010	Loxodonta_africana
ENSPMEG00000014105	smg5	99	65.322	ENSMFAG00000045357	SMG5	99	65.706	Macaca_fascicularis
ENSPMEG00000014105	smg5	92	78.824	ENSMMUG00000000090	SMG5	94	75.964	Macaca_mulatta
ENSPMEG00000014105	smg5	99	65.226	ENSMNEG00000044425	SMG5	99	65.610	Macaca_nemestrina
ENSPMEG00000014105	smg5	99	60.000	ENSMLEG00000041192	SMG5	93	66.516	Mandrillus_leucophaeus
ENSPMEG00000014105	smg5	100	86.465	ENSMAMG00000010683	smg5	100	86.643	Mastacembelus_armatus
ENSPMEG00000014105	smg5	99	82.964	ENSMZEG00005015815	smg5	99	83.173	Maylandia_zebra
ENSPMEG00000014105	smg5	63	81.011	ENSMZEG00005016543	smg5	100	81.011	Maylandia_zebra
ENSPMEG00000014105	smg5	56	41.047	ENSMAUG00000000043	-	68	50.513	Mesocricetus_auratus
ENSPMEG00000014105	smg5	99	65.896	ENSMAUG00000010381	Smg5	99	65.385	Mesocricetus_auratus
ENSPMEG00000014105	smg5	99	65.580	ENSMICG00000002257	SMG5	99	65.800	Microcebus_murinus
ENSPMEG00000014105	smg5	99	65.255	ENSMOCG00000016590	Smg5	99	65.222	Microtus_ochrogaster
ENSPMEG00000014105	smg5	100	82.964	ENSMMOG00000017199	smg5	100	82.697	Mola_mola
ENSPMEG00000014105	smg5	76	35.309	ENSMODG00000004532	-	85	34.815	Monodelphis_domestica
ENSPMEG00000014105	smg5	75	33.846	ENSMODG00000010675	-	88	34.103	Monodelphis_domestica
ENSPMEG00000014105	smg5	75	35.401	ENSMODG00000004511	-	76	35.467	Monodelphis_domestica
ENSPMEG00000014105	smg5	74	35.310	ENSMODG00000004735	-	89	35.310	Monodelphis_domestica
ENSPMEG00000014105	smg5	87	65.642	ENSMODG00000016901	SMG5	98	64.615	Monodelphis_domestica
ENSPMEG00000014105	smg5	100	85.027	ENSMALG00000010375	smg5	100	84.848	Monopterus_albus
ENSPMEG00000014105	smg5	99	65.800	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSPMEG00000014105	smg5	99	65.992	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSPMEG00000014105	smg5	99	65.673	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSPMEG00000014105	smg5	99	65.896	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSPMEG00000014105	smg5	94	64.424	ENSMPUG00000004546	SMG5	93	73.740	Mustela_putorius_furo
ENSPMEG00000014105	smg5	99	66.603	ENSMLUG00000008518	SMG5	99	65.833	Myotis_lucifugus
ENSPMEG00000014105	smg5	78	49.877	ENSNGAG00000012101	-	92	49.507	Nannospalax_galili
ENSPMEG00000014105	smg5	99	66.281	ENSNGAG00000020706	Smg5	99	65.863	Nannospalax_galili
ENSPMEG00000014105	smg5	97	80.876	ENSNBRG00000004332	smg5	98	81.972	Neolamprologus_brichardi
ENSPMEG00000014105	smg5	99	65.418	ENSNLEG00000012439	SMG5	99	65.802	Nomascus_leucogenys
ENSPMEG00000014105	smg5	99	64.615	ENSMEUG00000012834	SMG5	99	64.327	Notamacropus_eugenii
ENSPMEG00000014105	smg5	99	65.870	ENSOPRG00000009152	SMG5	99	65.192	Ochotona_princeps
ENSPMEG00000014105	smg5	99	65.712	ENSODEG00000012237	SMG5	99	65.835	Octodon_degus
ENSPMEG00000014105	smg5	100	87.200	ENSONIG00000008632	smg5	100	87.111	Oreochromis_niloticus
ENSPMEG00000014105	smg5	90	36.977	ENSOCUG00000023338	-	91	46.020	Oryctolagus_cuniculus
ENSPMEG00000014105	smg5	98	66.374	ENSOCUG00000012886	SMG5	100	66.112	Oryctolagus_cuniculus
ENSPMEG00000014105	smg5	100	84.821	ENSORLG00000016239	smg5	100	85.142	Oryzias_latipes
ENSPMEG00000014105	smg5	100	84.821	ENSORLG00020013127	smg5	100	85.040	Oryzias_latipes_hni
ENSPMEG00000014105	smg5	100	84.821	ENSORLG00015019014	smg5	100	85.307	Oryzias_latipes_hsok
ENSPMEG00000014105	smg5	84	84.272	ENSOMEG00000021330	smg5	93	85.749	Oryzias_melastigma
ENSPMEG00000014105	smg5	99	65.326	ENSOGAG00000004966	SMG5	99	65.481	Otolemur_garnettii
ENSPMEG00000014105	smg5	99	65.583	ENSOARG00000005778	SMG5	99	65.865	Ovis_aries
ENSPMEG00000014105	smg5	99	39.657	ENSOARG00000011963	-	93	51.090	Ovis_aries
ENSPMEG00000014105	smg5	99	65.296	ENSPPAG00000011996	SMG5	99	65.610	Pan_paniscus
ENSPMEG00000014105	smg5	98	65.686	ENSPPRG00000011901	SMG5	93	76.134	Panthera_pardus
ENSPMEG00000014105	smg5	97	62.363	ENSPTIG00000007892	SMG5	92	73.206	Panthera_tigris_altaica
ENSPMEG00000014105	smg5	86	78.371	ENSPTRG00000049282	-	99	65.610	Pan_troglodytes
ENSPMEG00000014105	smg5	99	65.296	ENSPTRG00000023925	SMG5	99	65.610	Pan_troglodytes
ENSPMEG00000014105	smg5	99	65.322	ENSPANG00000011201	SMG5	99	65.706	Papio_anubis
ENSPMEG00000014105	smg5	100	76.555	ENSPKIG00000009402	smg5	100	76.075	Paramormyrops_kingsleyae
ENSPMEG00000014105	smg5	98	66.019	ENSPSIG00000015198	SMG5	100	66.025	Pelodiscus_sinensis
ENSPMEG00000014105	smg5	100	72.193	ENSPMGG00000010465	smg5	100	71.914	Periophthalmus_magnuspinnatus
ENSPMEG00000014105	smg5	58	39.444	ENSPEMG00000010022	-	68	50.000	Peromyscus_maniculatus_bairdii
ENSPMEG00000014105	smg5	99	65.992	ENSPEMG00000001819	Smg5	99	65.670	Peromyscus_maniculatus_bairdii
ENSPMEG00000014105	smg5	89	59.864	ENSPMAG00000000410	smg5	91	62.830	Petromyzon_marinus
ENSPMEG00000014105	smg5	99	65.541	ENSPCIG00000018938	SMG5	99	64.774	Phascolarctos_cinereus
ENSPMEG00000014105	smg5	100	99.730	ENSPFOG00000010191	smg5	100	99.730	Poecilia_formosa
ENSPMEG00000014105	smg5	100	99.191	ENSPLAG00000009332	smg5	100	99.191	Poecilia_latipinna
ENSPMEG00000014105	smg5	100	98.383	ENSPREG00000017713	smg5	100	98.383	Poecilia_reticulata
ENSPMEG00000014105	smg5	99	65.322	ENSPPYG00000000723	SMG5	99	65.706	Pongo_abelii
ENSPMEG00000014105	smg5	82	74.359	ENSPCAG00000008412	SMG5	87	74.359	Procavia_capensis
ENSPMEG00000014105	smg5	99	65.964	ENSPCOG00000004741	SMG5	99	66.025	Propithecus_coquereli
ENSPMEG00000014105	smg5	99	59.426	ENSPVAG00000016748	SMG5	99	59.501	Pteropus_vampyrus
ENSPMEG00000014105	smg5	100	87.068	ENSPNYG00000013397	smg5	100	87.600	Pundamilia_nyererei
ENSPMEG00000014105	smg5	100	79.178	ENSPNAG00000028363	smg5	100	78.520	Pygocentrus_nattereri
ENSPMEG00000014105	smg5	99	65.833	ENSRNOG00000019590	Smg5	99	65.607	Rattus_norvegicus
ENSPMEG00000014105	smg5	99	65.322	ENSRBIG00000027428	SMG5	99	65.514	Rhinopithecus_bieti
ENSPMEG00000014105	smg5	99	65.226	ENSRROG00000030035	SMG5	99	65.418	Rhinopithecus_roxellana
ENSPMEG00000014105	smg5	99	65.583	ENSSBOG00000033339	SMG5	99	65.835	Saimiri_boliviensis_boliviensis
ENSPMEG00000014105	smg5	56	35.872	ENSSHAG00000000935	-	82	35.872	Sarcophilus_harrisii
ENSPMEG00000014105	smg5	84	37.888	ENSSHAG00000009572	-	80	41.032	Sarcophilus_harrisii
ENSPMEG00000014105	smg5	75	35.821	ENSSHAG00000000561	-	92	34.803	Sarcophilus_harrisii
ENSPMEG00000014105	smg5	98	64.878	ENSSHAG00000014163	SMG5	100	64.648	Sarcophilus_harrisii
ENSPMEG00000014105	smg5	99	78.194	ENSSFOG00015024175	smg5	100	77.885	Scleropages_formosus
ENSPMEG00000014105	smg5	100	86.530	ENSSMAG00000013059	smg5	100	86.542	Scophthalmus_maximus
ENSPMEG00000014105	smg5	100	87.345	ENSSDUG00000007122	smg5	100	86.814	Seriola_dumerili
ENSPMEG00000014105	smg5	100	87.389	ENSSLDG00000011418	smg5	100	87.655	Seriola_lalandi_dorsalis
ENSPMEG00000014105	smg5	90	58.936	ENSSARG00000012484	SMG5	99	58.635	Sorex_araneus
ENSPMEG00000014105	smg5	94	64.565	ENSSPUG00000002260	SMG5	100	63.554	Sphenodon_punctatus
ENSPMEG00000014105	smg5	100	88.741	ENSSPAG00000014266	smg5	100	88.830	Stegastes_partitus
ENSPMEG00000014105	smg5	99	65.966	ENSSSCG00000006490	-	100	65.507	Sus_scrofa
ENSPMEG00000014105	smg5	99	51.934	ENSSSCG00000039308	-	99	51.158	Sus_scrofa
ENSPMEG00000014105	smg5	99	66.186	ENSTGUG00000003748	-	99	65.326	Taeniopygia_guttata
ENSPMEG00000014105	smg5	100	79.451	ENSTRUG00000012580	smg5	100	79.344	Takifugu_rubripes
ENSPMEG00000014105	smg5	100	80.550	ENSTNIG00000010303	smg5	100	79.638	Tetraodon_nigroviridis
ENSPMEG00000014105	smg5	56	83.744	ENSTBEG00000002777	SMG5	58	83.744	Tupaia_belangeri
ENSPMEG00000014105	smg5	99	62.620	ENSTTRG00000001401	SMG5	93	70.362	Tursiops_truncatus
ENSPMEG00000014105	smg5	99	65.477	ENSUAMG00000013721	SMG5	93	75.459	Ursus_americanus
ENSPMEG00000014105	smg5	92	74.515	ENSUMAG00000018041	SMG5	95	73.210	Ursus_maritimus
ENSPMEG00000014105	smg5	92	70.792	ENSVPAG00000009446	SMG5	93	66.429	Vicugna_pacos
ENSPMEG00000014105	smg5	99	64.802	ENSVVUG00000005887	SMG5	91	77.488	Vulpes_vulpes
ENSPMEG00000014105	smg5	77	56.410	ENSXETG00000033791	SMG5	99	55.569	Xenopus_tropicalis
ENSPMEG00000014105	smg5	91	97.838	ENSXCOG00000004379	smg5	99	98.901	Xiphophorus_couchianus
ENSPMEG00000014105	smg5	100	97.394	ENSXMAG00000013499	smg5	100	97.394	Xiphophorus_maculatus