EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000014452 (Gene tree)
Gene ID: 106932696
Gene Symbol: sf3b4
Alias: -
Full Name: limb and CNS expressed 1 like
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 18561 bases
Position: chrKQ552509.1:177431-195991
Accession: 106932696
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000012270	RRM_1	PF00076.22	1.1e-38	1	2
ENSPMEP00000012270	RRM_1	PF00076.22	1.1e-38	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000019636	-	4459	XM_015011515	ENSPMEP00000028987	357 (aa)	XP_014867001	UPI00072E0E00
ENSPMET00000019648	-	2552	-	ENSPMEP00000012270	687 (aa)	-	-

Gene Model

Click here to download ENSPMEG00000014452's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000014452's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000014452	sf3b4	55	66.146	ENSDNOG00000037231	-	63	76.654	Dasypus_novemcinctus
ENSPMEG00000014452	sf3b4	50	84.286	ENSELUG00000012876	sf3b4	66	95.506	Esox_lucius
ENSPMEG00000014452	sf3b4	78	93.704	ENSFHEG00000008211	sf3b4	82	93.640	Fundulus_heteroclitus
ENSPMEG00000014452	sf3b4	57	97.970	ENSGAFG00000010181	sf3b4	100	97.970	Gambusia_affinis
ENSPMEG00000014452	sf3b4	52	64.286	ENSGGOG00000038845	-	54	89.151	Gorilla_gorilla
ENSPMEG00000014452	sf3b4	55	57.692	ENSSTOG00000029627	-	60	69.962	Ictidomys_tridecemlineatus
ENSPMEG00000014452	sf3b4	55	87.599	ENSKMAG00000008154	sf3b4	68	96.654	Kryptolebias_marmoratus
ENSPMEG00000014452	sf3b4	51	59.946	ENSMFAG00000039067	-	60	77.232	Macaca_fascicularis
ENSPMEG00000014452	sf3b4	57	48.941	ENSNLEG00000009693	-	98	48.941	Nomascus_leucogenys
ENSPMEG00000014452	sf3b4	52	56.764	ENSODEG00000008916	-	55	76.415	Octodon_degus
ENSPMEG00000014452	sf3b4	57	99.492	ENSPFOG00000005754	sf3b4	100	99.492	Poecilia_formosa
ENSPMEG00000014452	sf3b4	50	99.413	ENSPLAG00000001401	sf3b4	94	99.413	Poecilia_latipinna
ENSPMEG00000014452	sf3b4	50	94.915	ENSPREG00000011076	sf3b4	88	94.915	Poecilia_reticulata
ENSPMEG00000014452	sf3b4	54	60.582	ENSRROG00000028213	-	58	72.489	Rhinopithecus_roxellana
ENSPMEG00000014452	sf3b4	57	97.462	ENSXCOG00000019895	sf3b4	100	97.462	Xiphophorus_couchianus
ENSPMEG00000014452	sf3b4	57	97.716	ENSXMAG00000003772	sf3b4	100	97.716	Xiphophorus_maculatus