EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000016319 (Gene tree)
Gene ID: 106922733
Gene Symbol: -
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 17018 bases
Position: chrKQ551563.1:70144-87161
Accession: 106922733
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000030236	UPF1_Zn_bind	PF09416.10	1.8e-74	1	1
ENSPMEP00000030236	ResIII	PF04851.15	3.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000021726	-	4298	XM_014995394	ENSPMEP00000030236	1098 (aa)	XP_014850880	UPI0004440260

Gene Model

Click here to download ENSPMEG00000016319's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000016319's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000016319	-	100	91.486	ENSPMEG00000011443	-	100	91.447

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000016319	-	100	92.150	ENSG00000005007	UPF1	100	92.239	Homo_sapiens
ENSPMEG00000016319	-	100	93.110	ENSAPOG00000023773	upf1	100	93.019	Acanthochromis_polyacanthus
ENSPMEG00000016319	-	100	98.276	ENSAPOG00000010916	-	100	98.276	Acanthochromis_polyacanthus
ENSPMEG00000016319	-	100	91.652	ENSAMEG00000011474	UPF1	100	91.741	Ailuropoda_melanoleuca
ENSPMEG00000016319	-	100	93.188	ENSACIG00000019949	upf1	100	93.006	Amphilophus_citrinellus
ENSPMEG00000016319	-	93	97.758	ENSACIG00000010985	-	100	97.758	Amphilophus_citrinellus
ENSPMEG00000016319	-	100	98.185	ENSAOCG00000006352	-	100	98.185	Amphiprion_ocellaris
ENSPMEG00000016319	-	100	92.623	ENSAOCG00000018519	upf1	100	92.532	Amphiprion_ocellaris
ENSPMEG00000016319	-	100	92.623	ENSAPEG00000016344	upf1	100	92.532	Amphiprion_percula
ENSPMEG00000016319	-	100	98.094	ENSAPEG00000006292	-	100	98.094	Amphiprion_percula
ENSPMEG00000016319	-	100	91.242	ENSATEG00000017867	upf1	100	91.957	Anabas_testudineus
ENSPMEG00000016319	-	100	98.094	ENSATEG00000016606	-	100	98.094	Anabas_testudineus
ENSPMEG00000016319	-	95	93.649	ENSAPLG00000009175	UPF1	100	93.649	Anas_platyrhynchos
ENSPMEG00000016319	-	95	92.395	ENSANAG00000024107	UPF1	95	92.395	Aotus_nancymaae
ENSPMEG00000016319	-	100	93.097	ENSACLG00000007181	upf1	100	92.916	Astatotilapia_calliptera
ENSPMEG00000016319	-	100	98.185	ENSACLG00000022630	-	100	98.185	Astatotilapia_calliptera
ENSPMEG00000016319	-	100	93.931	ENSAMXG00000042187	upf1	100	93.744	Astyanax_mexicanus
ENSPMEG00000016319	-	100	91.667	ENSBTAG00000020922	UPF1	100	91.755	Bos_taurus
ENSPMEG00000016319	-	97	49.677	WBGene00004880	smg-2	99	49.493	Caenorhabditis_elegans
ENSPMEG00000016319	-	100	91.424	ENSCJAG00000019627	UPF1	100	91.512	Callithrix_jacchus
ENSPMEG00000016319	-	100	91.424	ENSCAFG00000014578	UPF1	100	91.512	Canis_familiaris
ENSPMEG00000016319	-	100	92.150	ENSCAFG00020012347	UPF1	100	92.239	Canis_lupus_dingo
ENSPMEG00000016319	-	100	92.397	ENSCHIG00000011018	UPF1	100	92.487	Capra_hircus
ENSPMEG00000016319	-	95	93.536	ENSTSYG00000008877	UPF1	98	93.536	Carlito_syrichta
ENSPMEG00000016319	-	96	92.857	ENSCAPG00000005758	UPF1	95	92.966	Cavia_aperea
ENSPMEG00000016319	-	100	92.536	ENSCPOG00000025463	UPF1	100	92.086	Cavia_porcellus
ENSPMEG00000016319	-	100	92.150	ENSCCAG00000032175	UPF1	100	92.239	Cebus_capucinus
ENSPMEG00000016319	-	94	93.983	ENSCATG00000040306	UPF1	97	93.983	Cercocebus_atys
ENSPMEG00000016319	-	95	93.726	ENSCLAG00000004037	UPF1	99	93.251	Chinchilla_lanigera
ENSPMEG00000016319	-	100	92.150	ENSCSAG00000005276	UPF1	100	92.239	Chlorocebus_sabaeus
ENSPMEG00000016319	-	100	92.294	ENSCPBG00000012513	UPF1	100	92.197	Chrysemys_picta_bellii
ENSPMEG00000016319	-	77	79.415	ENSCING00000021399	-	99	78.337	Ciona_intestinalis
ENSPMEG00000016319	-	99	73.063	ENSCSAVG00000006533	-	99	73.063	Ciona_savignyi
ENSPMEG00000016319	-	95	93.726	ENSCANG00000029819	UPF1	97	93.726	Colobus_angolensis_palliatus
ENSPMEG00000016319	-	100	91.935	ENSCGRG00001021067	Upf1	100	91.577	Cricetulus_griseus_chok1gshd
ENSPMEG00000016319	-	95	93.061	ENSCGRG00000013480	Upf1	98	92.586	Cricetulus_griseus_crigri
ENSPMEG00000016319	-	100	88.091	ENSCSEG00000017239	upf1	100	88.113	Cynoglossus_semilaevis
ENSPMEG00000016319	-	100	97.727	ENSCSEG00000016159	-	100	97.727	Cynoglossus_semilaevis
ENSPMEG00000016319	-	100	99.274	ENSCVAG00000010561	upf1	100	99.274	Cyprinodon_variegatus
ENSPMEG00000016319	-	100	93.291	ENSDARG00000016302	upf1	100	93.563	Danio_rerio
ENSPMEG00000016319	-	95	91.160	ENSDORG00000009984	Upf1	95	90.684	Dipodomys_ordii
ENSPMEG00000016319	-	86	71.534	FBgn0030354	Upf1	81	70.984	Drosophila_melanogaster
ENSPMEG00000016319	-	55	86.139	ENSEBUG00000010069	upf1	96	86.469	Eptatretus_burgeri
ENSPMEG00000016319	-	100	92.308	ENSEASG00005006549	UPF1	100	92.397	Equus_asinus_asinus
ENSPMEG00000016319	-	100	92.308	ENSECAG00000010639	UPF1	100	92.397	Equus_caballus
ENSPMEG00000016319	-	100	92.509	ENSELUG00000020917	upf1	100	92.058	Esox_lucius
ENSPMEG00000016319	-	100	94.500	ENSELUG00000012916	-	100	94.590	Esox_lucius
ENSPMEG00000016319	-	100	91.335	ENSFCAG00000009757	UPF1	100	91.424	Felis_catus
ENSPMEG00000016319	-	95	94.095	ENSFALG00000009312	UPF1	96	93.994	Ficedula_albicollis
ENSPMEG00000016319	-	95	93.631	ENSFDAG00000014816	UPF1	99	93.156	Fukomys_damarensis
ENSPMEG00000016319	-	100	89.088	ENSFHEG00000006428	upf1	100	88.819	Fundulus_heteroclitus
ENSPMEG00000016319	-	86	98.756	ENSFHEG00000016276	-	96	98.756	Fundulus_heteroclitus
ENSPMEG00000016319	-	100	94.680	ENSGMOG00000007541	upf1	100	94.955	Gadus_morhua
ENSPMEG00000016319	-	100	92.136	ENSGALG00000003220	UPF1	100	92.046	Gallus_gallus
ENSPMEG00000016319	-	63	94.388	ENSGAFG00000015443	-	85	94.388	Gambusia_affinis
ENSPMEG00000016319	-	100	99.818	ENSGAFG00000004831	upf1	100	99.818	Gambusia_affinis
ENSPMEG00000016319	-	100	92.703	ENSGAGG00000022217	UPF1	100	92.793	Gopherus_agassizii
ENSPMEG00000016319	-	95	94.530	ENSGGOG00000002608	UPF1	99	94.530	Gorilla_gorilla
ENSPMEG00000016319	-	91	81.567	ENSHBUG00000014694	upf1	100	84.444	Haplochromis_burtoni
ENSPMEG00000016319	-	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSPMEG00000016319	-	100	91.158	ENSHGLG00000010900	UPF1	100	91.247	Heterocephalus_glaber_female
ENSPMEG00000016319	-	95	91.825	ENSHGLG00100005904	UPF1	96	91.825	Heterocephalus_glaber_male
ENSPMEG00000016319	-	100	97.457	ENSHCOG00000008918	upf1	100	97.457	Hippocampus_comes
ENSPMEG00000016319	-	100	93.931	ENSIPUG00000005108	UPF1	100	93.744	Ictalurus_punctatus
ENSPMEG00000016319	-	100	92.150	ENSSTOG00000009196	UPF1	100	91.793	Ictidomys_tridecemlineatus
ENSPMEG00000016319	-	100	91.370	ENSJJAG00000023151	Upf1	100	91.014	Jaculus_jaculus
ENSPMEG00000016319	-	100	98.730	ENSKMAG00000004962	upf1	100	98.730	Kryptolebias_marmoratus
ENSPMEG00000016319	-	100	97.550	ENSLBEG00000027848	-	100	97.550	Labrus_bergylta
ENSPMEG00000016319	-	100	91.316	ENSLBEG00000014862	upf1	100	91.495	Labrus_bergylta
ENSPMEG00000016319	-	63	94.413	ENSLACG00000008482	UPF1	100	94.413	Latimeria_chalumnae
ENSPMEG00000016319	-	100	95.100	ENSLOCG00000002072	upf1	100	95.100	Lepisosteus_oculatus
ENSPMEG00000016319	-	100	90.965	ENSLAFG00000014963	UPF1	100	91.054	Loxodonta_africana
ENSPMEG00000016319	-	100	92.075	ENSMFAG00000037748	UPF1	100	92.164	Macaca_fascicularis
ENSPMEG00000016319	-	100	91.829	ENSMMUG00000023286	UPF1	100	91.918	Macaca_mulatta
ENSPMEG00000016319	-	100	92.075	ENSMNEG00000000046	UPF1	100	92.164	Macaca_nemestrina
ENSPMEG00000016319	-	95	93.726	ENSMLEG00000028404	UPF1	99	93.726	Mandrillus_leucophaeus
ENSPMEG00000016319	-	100	97.731	ENSMAMG00000006231	-	100	97.731	Mastacembelus_armatus
ENSPMEG00000016319	-	100	91.689	ENSMAMG00000006229	upf1	100	92.404	Mastacembelus_armatus
ENSPMEG00000016319	-	100	91.853	ENSMZEG00005003489	upf1	100	92.190	Maylandia_zebra
ENSPMEG00000016319	-	100	98.185	ENSMZEG00005016386	-	100	98.185	Maylandia_zebra
ENSPMEG00000016319	-	95	93.257	ENSMGAG00000004745	UPF1	100	93.257	Meleagris_gallopavo
ENSPMEG00000016319	-	95	93.061	ENSMAUG00000011398	Upf1	95	92.586	Mesocricetus_auratus
ENSPMEG00000016319	-	100	92.061	ENSMICG00000001659	UPF1	100	92.150	Microcebus_murinus
ENSPMEG00000016319	-	100	91.208	ENSMOCG00000005699	Upf1	100	90.941	Microtus_ochrogaster
ENSPMEG00000016319	-	100	92.259	ENSMMOG00000007881	upf1	100	92.539	Mola_mola
ENSPMEG00000016319	-	95	95.793	ENSMMOG00000007537	-	99	95.793	Mola_mola
ENSPMEG00000016319	-	100	91.182	ENSMODG00000003689	UPF1	100	91.358	Monodelphis_domestica
ENSPMEG00000016319	-	100	95.931	ENSMALG00000018100	-	100	95.931	Monopterus_albus
ENSPMEG00000016319	-	100	92.532	ENSMALG00000000144	upf1	100	92.532	Monopterus_albus
ENSPMEG00000016319	-	100	91.846	MGP_CAROLIEiJ_G0031142	Upf1	100	91.487	Mus_caroli
ENSPMEG00000016319	-	100	91.846	ENSMUSG00000058301	Upf1	100	91.487	Mus_musculus
ENSPMEG00000016319	-	100	91.846	MGP_PahariEiJ_G0021607	Upf1	100	91.487	Mus_pahari
ENSPMEG00000016319	-	100	91.846	MGP_SPRETEiJ_G0032260	Upf1	100	91.487	Mus_spretus
ENSPMEG00000016319	-	100	92.150	ENSMPUG00000015516	UPF1	100	92.239	Mustela_putorius_furo
ENSPMEG00000016319	-	99	91.943	ENSMLUG00000012122	UPF1	99	92.032	Myotis_lucifugus
ENSPMEG00000016319	-	100	90.877	ENSNGAG00000024107	Upf1	100	90.523	Nannospalax_galili
ENSPMEG00000016319	-	100	91.281	ENSNBRG00000000670	upf1	100	91.099	Neolamprologus_brichardi
ENSPMEG00000016319	-	100	94.576	ENSNBRG00000022069	-	100	97.090	Neolamprologus_brichardi
ENSPMEG00000016319	-	95	87.928	ENSNLEG00000006062	UPF1	99	87.928	Nomascus_leucogenys
ENSPMEG00000016319	-	83	88.845	ENSMEUG00000014146	-	83	88.845	Notamacropus_eugenii
ENSPMEG00000016319	-	95	87.332	ENSOPRG00000014018	UPF1	99	87.332	Ochotona_princeps
ENSPMEG00000016319	-	100	92.709	ENSODEG00000012426	UPF1	100	92.259	Octodon_degus
ENSPMEG00000016319	-	100	98.185	ENSONIG00000012729	-	100	98.185	Oreochromis_niloticus
ENSPMEG00000016319	-	100	92.032	ENSONIG00000010452	upf1	100	92.370	Oreochromis_niloticus
ENSPMEG00000016319	-	100	91.401	ENSOANG00000004568	UPF1	100	91.312	Ornithorhynchus_anatinus
ENSPMEG00000016319	-	100	97.368	ENSORLG00000008453	upf1	100	97.368	Oryzias_latipes
ENSPMEG00000016319	-	100	97.280	ENSORLG00020014758	upf1	100	97.280	Oryzias_latipes_hni
ENSPMEG00000016319	-	100	97.280	ENSORLG00015010165	upf1	100	97.280	Oryzias_latipes_hsok
ENSPMEG00000016319	-	100	97.822	ENSOMEG00000003665	upf1	100	97.822	Oryzias_melastigma
ENSPMEG00000016319	-	100	92.239	ENSOGAG00000012866	UPF1	100	92.328	Otolemur_garnettii
ENSPMEG00000016319	-	96	90.616	ENSOARG00000010739	UPF1	100	90.432	Ovis_aries
ENSPMEG00000016319	-	95	93.561	ENSPPAG00000043884	UPF1	96	93.561	Pan_paniscus
ENSPMEG00000016319	-	100	91.335	ENSPPRG00000023470	UPF1	100	91.424	Panthera_pardus
ENSPMEG00000016319	-	95	92.146	ENSPTIG00000010159	UPF1	99	92.146	Panthera_tigris_altaica
ENSPMEG00000016319	-	100	92.075	ENSPTRG00000010721	UPF1	100	92.164	Pan_troglodytes
ENSPMEG00000016319	-	100	92.075	ENSPANG00000008847	UPF1	100	92.164	Papio_anubis
ENSPMEG00000016319	-	92	95.040	ENSPKIG00000006069	upf1	95	95.972	Paramormyrops_kingsleyae
ENSPMEG00000016319	-	69	93.342	ENSPSIG00000009491	UPF1	100	93.342	Pelodiscus_sinensis
ENSPMEG00000016319	-	100	90.687	ENSPMGG00000017327	upf1	100	90.597	Periophthalmus_magnuspinnatus
ENSPMEG00000016319	-	100	91.208	ENSPEMG00000001085	Upf1	100	90.853	Peromyscus_maniculatus_bairdii
ENSPMEG00000016319	-	100	87.895	ENSPMAG00000001206	upf1	100	87.895	Petromyzon_marinus
ENSPMEG00000016319	-	100	92.411	ENSPCIG00000006156	UPF1	100	92.500	Phascolarctos_cinereus
ENSPMEG00000016319	-	100	90.917	ENSPLAG00000018155	-	100	90.288	Poecilia_latipinna
ENSPMEG00000016319	-	100	99.909	ENSPLAG00000016232	-	100	99.909	Poecilia_latipinna
ENSPMEG00000016319	-	100	91.203	ENSPREG00000009940	upf1	100	90.844	Poecilia_reticulata
ENSPMEG00000016319	-	100	99.636	ENSPREG00000011247	-	100	99.636	Poecilia_reticulata
ENSPMEG00000016319	-	100	86.561	ENSPPYG00000009752	UPF1	100	86.549	Pongo_abelii
ENSPMEG00000016319	-	75	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSPMEG00000016319	-	100	91.822	ENSPCOG00000023813	UPF1	100	91.911	Propithecus_coquereli
ENSPMEG00000016319	-	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSPMEG00000016319	-	100	91.853	ENSPNYG00000003694	upf1	100	92.190	Pundamilia_nyererei
ENSPMEG00000016319	-	100	98.185	ENSPNYG00000016731	-	100	98.185	Pundamilia_nyererei
ENSPMEG00000016319	-	100	93.659	ENSPNAG00000025614	upf1	100	93.472	Pygocentrus_nattereri
ENSPMEG00000016319	-	100	91.846	ENSRNOG00000020134	Upf1	100	91.487	Rattus_norvegicus
ENSPMEG00000016319	-	95	91.350	ENSRBIG00000013894	UPF1	98	94.426	Rhinopithecus_bieti
ENSPMEG00000016319	-	95	93.726	ENSRROG00000040935	UPF1	98	94.426	Rhinopithecus_roxellana
ENSPMEG00000016319	-	73	57.822	YMR080C	NAM7	82	57.822	Saccharomyces_cerevisiae
ENSPMEG00000016319	-	94	93.983	ENSSBOG00000023632	UPF1	96	93.983	Saimiri_boliviensis_boliviensis
ENSPMEG00000016319	-	95	93.643	ENSSHAG00000010499	UPF1	100	93.643	Sarcophilus_harrisii
ENSPMEG00000016319	-	100	95.100	ENSSFOG00015021095	upf1	100	95.100	Scleropages_formosus
ENSPMEG00000016319	-	100	98.094	ENSSMAG00000021018	-	100	98.094	Scophthalmus_maximus
ENSPMEG00000016319	-	100	91.047	ENSSMAG00000005055	upf1	100	91.674	Scophthalmus_maximus
ENSPMEG00000016319	-	100	98.276	ENSSDUG00000009629	-	100	98.276	Seriola_dumerili
ENSPMEG00000016319	-	100	91.421	ENSSDUG00000013320	upf1	100	92.315	Seriola_dumerili
ENSPMEG00000016319	-	100	98.276	ENSSLDG00000006878	-	100	98.276	Seriola_lalandi_dorsalis
ENSPMEG00000016319	-	100	92.245	ENSSLDG00000020868	upf1	100	92.786	Seriola_lalandi_dorsalis
ENSPMEG00000016319	-	100	92.536	ENSSPUG00000010538	UPF1	100	92.626	Sphenodon_punctatus
ENSPMEG00000016319	-	100	90.545	ENSSPAG00000000003	upf1	100	90.818	Stegastes_partitus
ENSPMEG00000016319	-	100	98.183	ENSSPAG00000011521	-	100	98.183	Stegastes_partitus
ENSPMEG00000016319	-	100	92.308	ENSSSCG00000039301	UPF1	99	94.253	Sus_scrofa
ENSPMEG00000016319	-	83	86.596	ENSTGUG00000001057	UPF1	100	90.680	Taeniopygia_guttata
ENSPMEG00000016319	-	100	96.818	ENSTRUG00000005131	-	100	96.818	Takifugu_rubripes
ENSPMEG00000016319	-	100	92.448	ENSTRUG00000000150	upf1	100	92.448	Takifugu_rubripes
ENSPMEG00000016319	-	100	88.819	ENSTTRG00000011544	UPF1	100	88.819	Tursiops_truncatus
ENSPMEG00000016319	-	100	92.061	ENSUAMG00000007093	UPF1	100	92.150	Ursus_americanus
ENSPMEG00000016319	-	95	94.253	ENSUMAG00000006652	UPF1	99	94.928	Ursus_maritimus
ENSPMEG00000016319	-	100	92.150	ENSVVUG00000007797	UPF1	100	92.239	Vulpes_vulpes
ENSPMEG00000016319	-	100	79.736	ENSXETG00000013602	upf1	100	79.736	Xenopus_tropicalis
ENSPMEG00000016319	-	94	99.708	ENSXCOG00000005764	-	100	99.708	Xiphophorus_couchianus
ENSPMEG00000016319	-	97	91.423	ENSXCOG00000015275	-	96	91.329	Xiphophorus_couchianus
ENSPMEG00000016319	-	100	99.818	ENSXMAG00000002540	-	100	99.818	Xiphophorus_maculatus
ENSPMEG00000016319	-	100	91.621	ENSXMAG00000001703	-	100	91.530	Xiphophorus_maculatus