EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000016378 (Gene tree)
Gene ID: -
Gene Symbol: lsm4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 6685 bases
Position: chrKQ551563.1:45865-52549
Accession: 106922732
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000013993	LSM	PF01423.22	1e-16	1	1
ENSPMEP00000030150	LSM	PF01423.22	1.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000032436	-	420	-	ENSPMEP00000013993	139 (aa)	-	-
ENSPMET00000021873	-	5165	XM_014995393	ENSPMEP00000030150	143 (aa)	XP_014850879	UPI000443F4F2

Gene Model

Click here to download ENSPMEG00000016378's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000016378's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000016378	lsm4	63	31.111	ENSPMEG00000000174	oscp1a	77	31.111
ENSPMEG00000016378	lsm4	79	30.973	ENSPMEG00000008482	snrpd3l	91	32.812
ENSPMEG00000016378	lsm4	69	32.673	ENSPMEG00000019574	si:ch73-14h10.2	100	32.673

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000016378	lsm4	93	77.444	ENSG00000130520	LSM4	98	78.417	Homo_sapiens
ENSPMEG00000016378	lsm4	100	88.079	ENSAPOG00000005643	lsm4	100	88.079	Acanthochromis_polyacanthus
ENSPMEG00000016378	lsm4	63	98.864	ENSAMEG00000011162	LSM4	94	78.571	Ailuropoda_melanoleuca
ENSPMEG00000016378	lsm4	100	89.865	ENSAOCG00000006414	lsm4	100	89.865	Amphiprion_ocellaris
ENSPMEG00000016378	lsm4	100	89.262	ENSAPEG00000006238	lsm4	100	89.262	Amphiprion_percula
ENSPMEG00000016378	lsm4	100	88.158	ENSATEG00000016559	lsm4	100	88.158	Anabas_testudineus
ENSPMEG00000016378	lsm4	63	98.851	ENSANAG00000034659	LSM4	98	79.839	Aotus_nancymaae
ENSPMEG00000016378	lsm4	100	90.476	ENSACLG00000022738	lsm4	100	90.476	Astatotilapia_calliptera
ENSPMEG00000016378	lsm4	100	88.194	ENSAMXG00000016932	lsm4	100	88.194	Astyanax_mexicanus
ENSPMEG00000016378	lsm4	63	98.864	ENSBTAG00000008578	LSM4	99	78.571	Bos_taurus
ENSPMEG00000016378	lsm4	59	76.829	WBGene00003078	lsm-4	83	66.667	Caenorhabditis_elegans
ENSPMEG00000016378	lsm4	63	98.851	ENSCJAG00000014171	LSM4	98	78.417	Callithrix_jacchus
ENSPMEG00000016378	lsm4	63	98.851	ENSCAFG00000014900	LSM4	89	78.417	Canis_familiaris
ENSPMEG00000016378	lsm4	63	98.851	ENSCAFG00020012137	LSM4	98	78.417	Canis_lupus_dingo
ENSPMEG00000016378	lsm4	63	98.864	ENSCHIG00000010928	LSM4	91	78.571	Capra_hircus
ENSPMEG00000016378	lsm4	63	97.701	ENSTSYG00000030906	LSM4	98	77.698	Carlito_syrichta
ENSPMEG00000016378	lsm4	63	97.701	ENSCAPG00000014140	LSM4	96	78.676	Cavia_aperea
ENSPMEG00000016378	lsm4	63	97.701	ENSCPOG00000024117	LSM4	96	78.676	Cavia_porcellus
ENSPMEG00000016378	lsm4	63	98.851	ENSCCAG00000036308	LSM4	98	78.417	Cebus_capucinus
ENSPMEG00000016378	lsm4	63	98.851	ENSCATG00000029311	LSM4	98	80.000	Cercocebus_atys
ENSPMEG00000016378	lsm4	63	98.851	ENSCLAG00000010828	LSM4	99	83.571	Chinchilla_lanigera
ENSPMEG00000016378	lsm4	63	98.851	ENSCSAG00000005370	LSM4	98	78.417	Chlorocebus_sabaeus
ENSPMEG00000016378	lsm4	63	100.000	ENSCPBG00000012925	LSM4	96	87.500	Chrysemys_picta_bellii
ENSPMEG00000016378	lsm4	62	91.860	ENSCING00000007519	-	90	81.513	Ciona_intestinalis
ENSPMEG00000016378	lsm4	61	92.941	ENSCSAVG00000008596	-	90	80.672	Ciona_savignyi
ENSPMEG00000016378	lsm4	63	98.851	ENSCANG00000043686	LSM4	98	80.000	Colobus_angolensis_palliatus
ENSPMEG00000016378	lsm4	63	95.402	ENSCGRG00001014436	Lsm4	99	82.857	Cricetulus_griseus_chok1gshd
ENSPMEG00000016378	lsm4	63	95.402	ENSCGRG00000009398	Lsm4	99	82.734	Cricetulus_griseus_crigri
ENSPMEG00000016378	lsm4	100	82.517	ENSCSEG00000016127	lsm4	100	93.007	Cynoglossus_semilaevis
ENSPMEG00000016378	lsm4	100	95.105	ENSCVAG00000010601	lsm4	100	95.105	Cyprinodon_variegatus
ENSPMEG00000016378	lsm4	90	94.531	ENSCVAG00000021828	lsm4	98	94.531	Cyprinodon_variegatus
ENSPMEG00000016378	lsm4	96	85.417	ENSDARG00000023852	lsm4	99	87.500	Danio_rerio
ENSPMEG00000016378	lsm4	63	97.701	ENSDORG00000024225	Lsm4	99	82.857	Dipodomys_ordii
ENSPMEG00000016378	lsm4	69	81.250	FBgn0032240	CG17768	63	81.443	Drosophila_melanogaster
ENSPMEG00000016378	lsm4	53	97.260	ENSETEG00000007762	-	98	76.000	Echinops_telfairi
ENSPMEG00000016378	lsm4	58	87.500	ENSEBUG00000003639	-	84	68.504	Eptatretus_burgeri
ENSPMEG00000016378	lsm4	63	98.851	ENSECAG00000010141	LSM4	56	78.417	Equus_caballus
ENSPMEG00000016378	lsm4	87	93.600	ENSELUG00000012821	lsm4	95	93.600	Esox_lucius
ENSPMEG00000016378	lsm4	63	98.851	ENSFCAG00000040580	LSM4	98	78.417	Felis_catus
ENSPMEG00000016378	lsm4	63	100.000	ENSFALG00000009478	LSM4	96	87.407	Ficedula_albicollis
ENSPMEG00000016378	lsm4	63	98.851	ENSFDAG00000010124	LSM4	99	79.137	Fukomys_damarensis
ENSPMEG00000016378	lsm4	99	80.952	ENSGMOG00000007729	lsm4	99	82.432	Gadus_morhua
ENSPMEG00000016378	lsm4	63	100.000	ENSGALG00000003385	LSM4	96	87.500	Gallus_gallus
ENSPMEG00000016378	lsm4	100	97.203	ENSGAFG00000004903	lsm4	97	95.312	Gambusia_affinis
ENSPMEG00000016378	lsm4	100	83.333	ENSGACG00000008140	lsm4	100	86.667	Gasterosteus_aculeatus
ENSPMEG00000016378	lsm4	63	100.000	ENSGAGG00000017812	LSM4	96	87.500	Gopherus_agassizii
ENSPMEG00000016378	lsm4	83	81.513	ENSGGOG00000012914	-	98	80.000	Gorilla_gorilla
ENSPMEG00000016378	lsm4	100	91.096	ENSHBUG00000008858	lsm4	80	91.096	Haplochromis_burtoni
ENSPMEG00000016378	lsm4	63	98.851	ENSHGLG00000006568	LSM4	98	78.417	Heterocephalus_glaber_female
ENSPMEG00000016378	lsm4	66	97.826	ENSHGLG00100007894	LSM4	99	98.913	Heterocephalus_glaber_male
ENSPMEG00000016378	lsm4	100	95.105	ENSHCOG00000008819	lsm4	100	95.105	Hippocampus_comes
ENSPMEG00000016378	lsm4	100	88.889	ENSIPUG00000005368	Lsm4	100	88.889	Ictalurus_punctatus
ENSPMEG00000016378	lsm4	63	98.851	ENSSTOG00000016494	LSM4	98	78.417	Ictidomys_tridecemlineatus
ENSPMEG00000016378	lsm4	63	96.552	ENSJJAG00000017420	Lsm4	98	76.978	Jaculus_jaculus
ENSPMEG00000016378	lsm4	100	93.056	ENSKMAG00000005073	lsm4	100	93.056	Kryptolebias_marmoratus
ENSPMEG00000016378	lsm4	100	89.262	ENSLBEG00000027930	lsm4	100	89.262	Labrus_bergylta
ENSPMEG00000016378	lsm4	63	100.000	ENSLACG00000015861	LSM4	99	85.915	Latimeria_chalumnae
ENSPMEG00000016378	lsm4	88	91.339	ENSLOCG00000002025	lsm4	100	86.806	Lepisosteus_oculatus
ENSPMEG00000016378	lsm4	63	97.727	ENSLAFG00000017459	LSM4	99	78.571	Loxodonta_africana
ENSPMEG00000016378	lsm4	63	98.851	ENSMFAG00000031194	LSM4	98	80.000	Macaca_fascicularis
ENSPMEG00000016378	lsm4	63	98.851	ENSMMUG00000004405	LSM4	98	78.417	Macaca_mulatta
ENSPMEG00000016378	lsm4	63	98.851	ENSMNEG00000042899	LSM4	98	80.000	Macaca_nemestrina
ENSPMEG00000016378	lsm4	63	98.851	ENSMLEG00000027948	LSM4	98	80.000	Mandrillus_leucophaeus
ENSPMEG00000016378	lsm4	100	93.007	ENSMAMG00000006190	lsm4	100	93.007	Mastacembelus_armatus
ENSPMEG00000016378	lsm4	100	91.096	ENSMZEG00005016420	lsm4	100	91.096	Maylandia_zebra
ENSPMEG00000016378	lsm4	94	77.941	ENSMGAG00000004976	LSM4	96	82.353	Meleagris_gallopavo
ENSPMEG00000016378	lsm4	69	95.960	ENSMICG00000000222	LSM4	98	77.698	Microcebus_murinus
ENSPMEG00000016378	lsm4	63	95.402	ENSMOCG00000020861	Lsm4	98	76.259	Microtus_ochrogaster
ENSPMEG00000016378	lsm4	53	100.000	ENSMODG00000015044	-	98	78.400	Monodelphis_domestica
ENSPMEG00000016378	lsm4	100	91.608	ENSMALG00000018159	lsm4	100	91.608	Monopterus_albus
ENSPMEG00000016378	lsm4	63	95.402	MGP_CAROLIEiJ_G0031158	Lsm4	98	76.259	Mus_caroli
ENSPMEG00000016378	lsm4	63	95.402	ENSMUSG00000031848	Lsm4	96	87.879	Mus_musculus
ENSPMEG00000016378	lsm4	63	95.402	MGP_PahariEiJ_G0021623	Lsm4	98	76.259	Mus_pahari
ENSPMEG00000016378	lsm4	63	95.402	MGP_SPRETEiJ_G0032276	Lsm4	98	76.259	Mus_spretus
ENSPMEG00000016378	lsm4	63	98.851	ENSMPUG00000015589	LSM4	98	78.417	Mustela_putorius_furo
ENSPMEG00000016378	lsm4	63	98.864	ENSMLUG00000004010	LSM4	99	78.571	Myotis_lucifugus
ENSPMEG00000016378	lsm4	63	95.402	ENSNGAG00000008644	Lsm4	98	76.259	Nannospalax_galili
ENSPMEG00000016378	lsm4	76	98.148	ENSNBRG00000022150	lsm4	67	98.148	Neolamprologus_brichardi
ENSPMEG00000016378	lsm4	53	95.890	ENSMEUG00000013229	LSM4	98	73.600	Notamacropus_eugenii
ENSPMEG00000016378	lsm4	86	77.311	ENSOPRG00000005575	LSM4	98	79.167	Ochotona_princeps
ENSPMEG00000016378	lsm4	63	88.506	ENSODEG00000004519	-	98	71.014	Octodon_degus
ENSPMEG00000016378	lsm4	97	60.714	ENSODEG00000011712	-	97	54.676	Octodon_degus
ENSPMEG00000016378	lsm4	63	98.851	ENSODEG00000020549	-	99	83.571	Octodon_degus
ENSPMEG00000016378	lsm4	100	90.476	ENSONIG00000012724	lsm4	100	90.476	Oreochromis_niloticus
ENSPMEG00000016378	lsm4	63	94.565	ENSOANG00000007434	LSM4	98	81.452	Ornithorhynchus_anatinus
ENSPMEG00000016378	lsm4	100	93.750	ENSORLG00000008391	lsm4	100	93.750	Oryzias_latipes
ENSPMEG00000016378	lsm4	100	93.056	ENSORLG00020014829	lsm4	100	93.056	Oryzias_latipes_hni
ENSPMEG00000016378	lsm4	100	92.361	ENSORLG00015010205	lsm4	100	92.361	Oryzias_latipes_hsok
ENSPMEG00000016378	lsm4	100	94.444	ENSOMEG00000003606	lsm4	100	94.444	Oryzias_melastigma
ENSPMEG00000016378	lsm4	70	95.876	ENSOGAG00000027992	LSM4	93	78.676	Otolemur_garnettii
ENSPMEG00000016378	lsm4	63	98.851	ENSOARG00000012553	LSM4	94	79.137	Ovis_aries
ENSPMEG00000016378	lsm4	83	81.513	ENSPPAG00000044045	-	98	80.000	Pan_paniscus
ENSPMEG00000016378	lsm4	63	98.851	ENSPPRG00000018264	LSM4	98	78.417	Panthera_pardus
ENSPMEG00000016378	lsm4	63	98.851	ENSPTIG00000006306	LSM4	99	78.417	Panthera_tigris_altaica
ENSPMEG00000016378	lsm4	63	98.851	ENSPTRG00000031470	LSM4	98	80.000	Pan_troglodytes
ENSPMEG00000016378	lsm4	63	98.851	ENSPANG00000014399	LSM4	98	78.417	Papio_anubis
ENSPMEG00000016378	lsm4	100	88.194	ENSPKIG00000006154	lsm4	100	88.194	Paramormyrops_kingsleyae
ENSPMEG00000016378	lsm4	63	100.000	ENSPSIG00000012358	LSM4	96	86.667	Pelodiscus_sinensis
ENSPMEG00000016378	lsm4	63	95.402	ENSPEMG00000001358	Lsm4	98	76.259	Peromyscus_maniculatus_bairdii
ENSPMEG00000016378	lsm4	100	100.000	ENSPFOG00000000570	lsm4	76	100.000	Poecilia_formosa
ENSPMEG00000016378	lsm4	100	98.601	ENSPLAG00000016267	lsm4	100	98.601	Poecilia_latipinna
ENSPMEG00000016378	lsm4	100	99.301	ENSPREG00000011290	lsm4	76	99.301	Poecilia_reticulata
ENSPMEG00000016378	lsm4	63	98.851	ENSPPYG00000009736	LSM4	98	78.417	Pongo_abelii
ENSPMEG00000016378	lsm4	53	97.260	ENSPCAG00000008513	LSM4	98	76.000	Procavia_capensis
ENSPMEG00000016378	lsm4	69	95.960	ENSPCOG00000019837	LSM4	98	77.698	Propithecus_coquereli
ENSPMEG00000016378	lsm4	63	98.851	ENSPVAG00000015383	LSM4	98	78.417	Pteropus_vampyrus
ENSPMEG00000016378	lsm4	100	91.096	ENSPNYG00000016794	lsm4	100	91.096	Pundamilia_nyererei
ENSPMEG00000016378	lsm4	95	90.441	ENSPNAG00000016598	lsm4	100	90.441	Pygocentrus_nattereri
ENSPMEG00000016378	lsm4	63	95.402	ENSRNOG00000019572	Lsm4	98	76.259	Rattus_norvegicus
ENSPMEG00000016378	lsm4	63	98.851	ENSRBIG00000024717	LSM4	98	80.000	Rhinopithecus_bieti
ENSPMEG00000016378	lsm4	63	98.851	ENSRROG00000045706	LSM4	98	80.000	Rhinopithecus_roxellana
ENSPMEG00000016378	lsm4	59	40.217	YER112W	LSM4	52	40.206	Saccharomyces_cerevisiae
ENSPMEG00000016378	lsm4	53	98.649	ENSSBOG00000022455	LSM4	98	76.190	Saimiri_boliviensis_boliviensis
ENSPMEG00000016378	lsm4	63	100.000	ENSSHAG00000011559	LSM4	99	85.714	Sarcophilus_harrisii
ENSPMEG00000016378	lsm4	100	89.583	ENSSFOG00015021067	lsm4	100	89.583	Scleropages_formosus
ENSPMEG00000016378	lsm4	100	76.000	ENSSMAG00000021020	lsm4	100	88.667	Scophthalmus_maximus
ENSPMEG00000016378	lsm4	100	80.240	ENSSDUG00000009588	lsm4	100	80.240	Seriola_dumerili
ENSPMEG00000016378	lsm4	100	79.762	ENSSLDG00000006827	lsm4	100	79.762	Seriola_lalandi_dorsalis
ENSPMEG00000016378	lsm4	63	100.000	ENSSPUG00000010166	LSM4	71	85.000	Sphenodon_punctatus
ENSPMEG00000016378	lsm4	100	88.079	ENSSPAG00000011615	lsm4	100	88.079	Stegastes_partitus
ENSPMEG00000016378	lsm4	63	98.851	ENSSSCG00000034314	LSM4	98	78.417	Sus_scrofa
ENSPMEG00000016378	lsm4	100	92.308	ENSTRUG00000021737	lsm4	100	92.308	Takifugu_rubripes
ENSPMEG00000016378	lsm4	100	88.889	ENSTNIG00000010191	lsm4	100	88.889	Tetraodon_nigroviridis
ENSPMEG00000016378	lsm4	63	98.864	ENSUAMG00000000665	LSM4	99	78.571	Ursus_americanus
ENSPMEG00000016378	lsm4	63	98.851	ENSUMAG00000009013	LSM4	98	78.417	Ursus_maritimus
ENSPMEG00000016378	lsm4	63	97.727	ENSVVUG00000008136	LSM4	70	77.857	Vulpes_vulpes
ENSPMEG00000016378	lsm4	69	96.939	ENSXETG00000024933	lsm4	99	86.331	Xenopus_tropicalis
ENSPMEG00000016378	lsm4	100	97.203	ENSXMAG00000026672	lsm4	76	97.203	Xiphophorus_maculatus