EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000016873 (Gene tree)
Gene ID: 106929897
Gene Symbol: rad54b
Alias: -
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 19080 bases
Position: chrKQ552164.1:93954-113033
Accession: 106929897
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000014431	ResIII	PF04851.15	2.5e-12	1	1
ENSPMEP00000014464	ResIII	PF04851.15	3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000022475	-	3127	XM_015007113	ENSPMEP00000014464	937 (aa)	XP_014862599	UPI00072E1B5B
ENSPMET00000022422	-	2481	-	ENSPMEP00000014431	826 (aa)	-	-

Gene Model

Click here to download ENSPMEG00000016873's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000016873's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000016873	rad54b	61	36.170	ENSPMEG00000003024	hells	55	36.170
ENSPMEG00000016873	rad54b	72	45.066	ENSPMEG00000008299	rad54l	89	44.992

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000016873	rad54b	85	59.781	ENSG00000265817	FSBP	99	59.946	Homo_sapiens
ENSPMEG00000016873	rad54b	99	55.000	ENSG00000197275	RAD54B	99	55.000	Homo_sapiens
ENSPMEG00000016873	rad54b	95	59.556	ENSAMEG00000005834	-	99	55.165	Ailuropoda_melanoleuca
ENSPMEG00000016873	rad54b	99	80.800	ENSACIG00000013005	rad54b	99	80.800	Amphilophus_citrinellus
ENSPMEG00000016873	rad54b	99	86.000	ENSAOCG00000008523	rad54b	99	82.372	Amphiprion_ocellaris
ENSPMEG00000016873	rad54b	99	76.099	ENSAPEG00000001673	rad54b	99	76.099	Amphiprion_percula
ENSPMEG00000016873	rad54b	98	83.824	ENSATEG00000001527	rad54b	99	83.824	Anabas_testudineus
ENSPMEG00000016873	rad54b	99	62.672	ENSAPLG00000014366	-	100	57.712	Anas_platyrhynchos
ENSPMEG00000016873	rad54b	93	60.814	ENSACAG00000003671	-	98	61.090	Anolis_carolinensis
ENSPMEG00000016873	rad54b	75	61.455	ENSANAG00000019528	-	99	61.801	Aotus_nancymaae
ENSPMEG00000016873	rad54b	99	81.776	ENSACLG00000007826	rad54b	99	85.732	Astatotilapia_calliptera
ENSPMEG00000016873	rad54b	92	67.775	ENSAMXG00000039985	rad54b	95	68.125	Astyanax_mexicanus
ENSPMEG00000016873	rad54b	99	56.064	ENSBTAG00000000632	RAD54B	99	56.064	Bos_taurus
ENSPMEG00000016873	rad54b	86	36.461	WBGene00013792	Y116A8C.13	97	34.299	Caenorhabditis_elegans
ENSPMEG00000016873	rad54b	95	59.803	ENSCJAG00000000080	-	99	59.781	Callithrix_jacchus
ENSPMEG00000016873	rad54b	95	60.296	ENSCAFG00000009179	RAD54B	99	55.579	Canis_familiaris
ENSPMEG00000016873	rad54b	95	60.049	ENSCAFG00020012084	-	99	55.579	Canis_lupus_dingo
ENSPMEG00000016873	rad54b	99	55.957	ENSCHIG00000008230	-	99	55.957	Capra_hircus
ENSPMEG00000016873	rad54b	95	59.926	ENSTSYG00000013234	-	99	55.614	Carlito_syrichta
ENSPMEG00000016873	rad54b	100	54.632	ENSCPOG00000011643	-	100	54.632	Cavia_porcellus
ENSPMEG00000016873	rad54b	99	54.574	ENSCCAG00000011754	-	99	59.809	Cebus_capucinus
ENSPMEG00000016873	rad54b	95	59.091	ENSCATG00000030661	-	99	60.027	Cercocebus_atys
ENSPMEG00000016873	rad54b	99	57.416	ENSCLAG00000010476	-	99	57.416	Chinchilla_lanigera
ENSPMEG00000016873	rad54b	95	59.113	ENSCSAG00000012712	-	99	54.846	Chlorocebus_sabaeus
ENSPMEG00000016873	rad54b	99	57.872	ENSCPBG00000003204	-	98	59.676	Chrysemys_picta_bellii
ENSPMEG00000016873	rad54b	95	59.360	ENSCANG00000017939	-	99	60.300	Colobus_angolensis_palliatus
ENSPMEG00000016873	rad54b	99	56.045	ENSCGRG00001020184	Rad54b	99	56.045	Cricetulus_griseus_chok1gshd
ENSPMEG00000016873	rad54b	99	54.596	ENSCGRG00000016752	Rad54b	99	54.596	Cricetulus_griseus_crigri
ENSPMEG00000016873	rad54b	99	79.142	ENSCSEG00000001601	rad54b	99	81.692	Cynoglossus_semilaevis
ENSPMEG00000016873	rad54b	99	85.006	ENSCVAG00000009200	rad54b	99	85.006	Cyprinodon_variegatus
ENSPMEG00000016873	rad54b	99	63.521	ENSDARG00000092134	rad54b	99	68.692	Danio_rerio
ENSPMEG00000016873	rad54b	95	60.149	ENSDNOG00000015535	-	99	55.708	Dasypus_novemcinctus
ENSPMEG00000016873	rad54b	99	57.256	ENSDORG00000002492	Rad54b	99	57.548	Dipodomys_ordii
ENSPMEG00000016873	rad54b	84	62.429	ENSETEG00000010605	-	100	58.293	Echinops_telfairi
ENSPMEG00000016873	rad54b	100	47.138	ENSEBUG00000009104	rad54b	99	47.138	Eptatretus_burgeri
ENSPMEG00000016873	rad54b	93	59.849	ENSEASG00005004021	-	89	60.477	Equus_asinus_asinus
ENSPMEG00000016873	rad54b	99	54.947	ENSECAG00000021949	-	99	54.947	Equus_caballus
ENSPMEG00000016873	rad54b	77	51.266	ENSEEUG00000008056	-	72	52.174	Erinaceus_europaeus
ENSPMEG00000016873	rad54b	99	75.410	ENSELUG00000009287	rad54b	99	71.053	Esox_lucius
ENSPMEG00000016873	rad54b	99	55.461	ENSFCAG00000015513	-	99	60.598	Felis_catus
ENSPMEG00000016873	rad54b	99	57.384	ENSFALG00000005467	-	99	57.384	Ficedula_albicollis
ENSPMEG00000016873	rad54b	99	55.698	ENSFDAG00000020541	-	99	55.698	Fukomys_damarensis
ENSPMEG00000016873	rad54b	93	85.369	ENSFHEG00000014382	rad54b	90	86.165	Fundulus_heteroclitus
ENSPMEG00000016873	rad54b	92	76.933	ENSGMOG00000014774	rad54b	98	79.721	Gadus_morhua
ENSPMEG00000016873	rad54b	97	61.446	ENSGALG00000043597	RAD54B	100	56.846	Gallus_gallus
ENSPMEG00000016873	rad54b	100	95.731	ENSGAFG00000007901	rad54b	100	95.731	Gambusia_affinis
ENSPMEG00000016873	rad54b	99	79.924	ENSGACG00000009128	rad54b	99	75.080	Gasterosteus_aculeatus
ENSPMEG00000016873	rad54b	99	58.006	ENSGAGG00000018747	-	99	58.006	Gopherus_agassizii
ENSPMEG00000016873	rad54b	95	59.630	ENSGGOG00000023516	-	99	55.213	Gorilla_gorilla
ENSPMEG00000016873	rad54b	99	83.944	ENSHBUG00000016017	rad54b	99	82.139	Haplochromis_burtoni
ENSPMEG00000016873	rad54b	93	60.728	ENSHGLG00000008263	RAD54B	98	54.271	Heterocephalus_glaber_female
ENSPMEG00000016873	rad54b	99	53.623	ENSHGLG00100008108	-	98	53.623	Heterocephalus_glaber_male
ENSPMEG00000016873	rad54b	99	72.038	ENSHCOG00000004764	rad54b	98	74.629	Hippocampus_comes
ENSPMEG00000016873	rad54b	99	61.411	ENSIPUG00000018531	rad54b	99	61.411	Ictalurus_punctatus
ENSPMEG00000016873	rad54b	97	57.882	ENSSTOG00000010791	-	99	53.717	Ictidomys_tridecemlineatus
ENSPMEG00000016873	rad54b	99	54.478	ENSJJAG00000010314	Rad54b	99	54.459	Jaculus_jaculus
ENSPMEG00000016873	rad54b	99	80.874	ENSKMAG00000004744	rad54b	99	80.756	Kryptolebias_marmoratus
ENSPMEG00000016873	rad54b	88	63.660	ENSLACG00000000859	-	100	64.683	Latimeria_chalumnae
ENSPMEG00000016873	rad54b	97	66.866	ENSLOCG00000010100	rad54b	99	68.198	Lepisosteus_oculatus
ENSPMEG00000016873	rad54b	95	58.025	ENSLAFG00000015315	-	99	58.025	Loxodonta_africana
ENSPMEG00000016873	rad54b	95	59.236	ENSMFAG00000031629	-	99	60.027	Macaca_fascicularis
ENSPMEG00000016873	rad54b	95	59.236	ENSMMUG00000005659	-	99	55.059	Macaca_mulatta
ENSPMEG00000016873	rad54b	95	59.360	ENSMNEG00000016408	-	99	54.873	Macaca_nemestrina
ENSPMEG00000016873	rad54b	95	59.236	ENSMLEG00000006946	-	99	55.059	Mandrillus_leucophaeus
ENSPMEG00000016873	rad54b	99	77.879	ENSMAMG00000012269	rad54b	99	77.879	Mastacembelus_armatus
ENSPMEG00000016873	rad54b	99	83.944	ENSMZEG00005005281	rad54b	96	85.590	Maylandia_zebra
ENSPMEG00000016873	rad54b	97	60.990	ENSMGAG00000012024	-	100	56.549	Meleagris_gallopavo
ENSPMEG00000016873	rad54b	99	56.144	ENSMAUG00000013586	Rad54b	99	56.144	Mesocricetus_auratus
ENSPMEG00000016873	rad54b	99	56.948	ENSMICG00000000754	-	100	56.948	Microcebus_murinus
ENSPMEG00000016873	rad54b	100	55.234	ENSMOCG00000020035	Rad54b	100	55.307	Microtus_ochrogaster
ENSPMEG00000016873	rad54b	99	76.932	ENSMMOG00000003394	rad54b	96	82.903	Mola_mola
ENSPMEG00000016873	rad54b	93	59.217	ENSMODG00000007343	-	98	59.227	Monodelphis_domestica
ENSPMEG00000016873	rad54b	75	83.544	ENSMALG00000001520	rad54b	99	85.023	Monopterus_albus
ENSPMEG00000016873	rad54b	99	55.407	MGP_CAROLIEiJ_G0025810	Rad54b	99	55.407	Mus_caroli
ENSPMEG00000016873	rad54b	99	54.515	ENSMUSG00000078773	Rad54b	99	54.515	Mus_musculus
ENSPMEG00000016873	rad54b	99	55.369	MGP_PahariEiJ_G0023933	Rad54b	99	55.369	Mus_pahari
ENSPMEG00000016873	rad54b	99	55.022	MGP_SPRETEiJ_G0026758	Rad54b	99	55.022	Mus_spretus
ENSPMEG00000016873	rad54b	93	59.899	ENSMPUG00000008878	-	97	60.126	Mustela_putorius_furo
ENSPMEG00000016873	rad54b	99	54.555	ENSMLUG00000008953	-	99	54.555	Myotis_lucifugus
ENSPMEG00000016873	rad54b	99	55.055	ENSNGAG00000017537	Rad54b	99	55.055	Nannospalax_galili
ENSPMEG00000016873	rad54b	99	82.360	ENSNBRG00000013394	rad54b	99	85.856	Neolamprologus_brichardi
ENSPMEG00000016873	rad54b	100	54.545	ENSNLEG00000003062	-	100	59.837	Nomascus_leucogenys
ENSPMEG00000016873	rad54b	77	61.275	ENSMEUG00000012426	-	71	61.520	Notamacropus_eugenii
ENSPMEG00000016873	rad54b	99	55.720	ENSODEG00000019564	-	99	55.732	Octodon_degus
ENSPMEG00000016873	rad54b	85	77.273	ENSODEG00000002650	-	97	77.273	Octodon_degus
ENSPMEG00000016873	rad54b	99	84.091	ENSONIG00000006067	rad54b	99	82.799	Oreochromis_niloticus
ENSPMEG00000016873	rad54b	88	61.192	ENSOANG00000011348	-	99	61.286	Ornithorhynchus_anatinus
ENSPMEG00000016873	rad54b	99	54.767	ENSOCUG00000016478	-	99	54.767	Oryctolagus_cuniculus
ENSPMEG00000016873	rad54b	99	81.772	ENSORLG00000008918	rad54b	99	85.981	Oryzias_latipes
ENSPMEG00000016873	rad54b	75	82.866	ENSORLG00020012171	rad54b	99	85.981	Oryzias_latipes_hni
ENSPMEG00000016873	rad54b	99	81.187	ENSORLG00015018536	rad54b	99	79.065	Oryzias_latipes_hsok
ENSPMEG00000016873	rad54b	91	82.461	ENSOMEG00000004345	rad54b	99	84.545	Oryzias_melastigma
ENSPMEG00000016873	rad54b	99	53.221	ENSOGAG00000007854	-	99	53.674	Otolemur_garnettii
ENSPMEG00000016873	rad54b	94	61.202	ENSOARG00000007691	-	98	61.471	Ovis_aries
ENSPMEG00000016873	rad54b	95	58.220	ENSPPAG00000029572	-	99	53.731	Pan_paniscus
ENSPMEG00000016873	rad54b	99	55.355	ENSPPRG00000007571	-	99	60.326	Panthera_pardus
ENSPMEG00000016873	rad54b	85	59.973	ENSPTIG00000012670	-	99	60.326	Panthera_tigris_altaica
ENSPMEG00000016873	rad54b	95	58.990	ENSPTRG00000020427	-	99	59.973	Pan_troglodytes
ENSPMEG00000016873	rad54b	95	59.236	ENSPANG00000019566	-	99	55.059	Papio_anubis
ENSPMEG00000016873	rad54b	99	63.627	ENSPKIG00000014974	rad54b	99	63.627	Paramormyrops_kingsleyae
ENSPMEG00000016873	rad54b	99	57.524	ENSPSIG00000002383	-	95	63.085	Pelodiscus_sinensis
ENSPMEG00000016873	rad54b	99	56.125	ENSPEMG00000012133	Rad54b	99	56.125	Peromyscus_maniculatus_bairdii
ENSPMEG00000016873	rad54b	92	58.154	ENSPMAG00000002916	rad54b	98	59.016	Petromyzon_marinus
ENSPMEG00000016873	rad54b	93	61.004	ENSPCIG00000020151	-	94	59.164	Phascolarctos_cinereus
ENSPMEG00000016873	rad54b	100	99.573	ENSPFOG00000023411	rad54b	100	99.573	Poecilia_formosa
ENSPMEG00000016873	rad54b	99	100.000	ENSPLAG00000010430	rad54b	100	98.933	Poecilia_latipinna
ENSPMEG00000016873	rad54b	100	97.225	ENSPREG00000018443	rad54b	100	97.225	Poecilia_reticulata
ENSPMEG00000016873	rad54b	95	59.580	ENSPPYG00000018750	-	99	54.516	Pongo_abelii
ENSPMEG00000016873	rad54b	99	55.272	ENSPCOG00000026845	-	99	60.165	Propithecus_coquereli
ENSPMEG00000016873	rad54b	88	59.091	ENSPVAG00000000261	-	86	59.600	Pteropus_vampyrus
ENSPMEG00000016873	rad54b	93	84.399	ENSPNYG00000018303	rad54b	96	84.399	Pundamilia_nyererei
ENSPMEG00000016873	rad54b	99	66.036	ENSPNAG00000000295	rad54b	99	66.036	Pygocentrus_nattereri
ENSPMEG00000016873	rad54b	99	55.395	ENSRNOG00000039949	Rad54b	99	55.395	Rattus_norvegicus
ENSPMEG00000016873	rad54b	95	58.990	ENSRBIG00000020419	-	99	54.739	Rhinopithecus_bieti
ENSPMEG00000016873	rad54b	95	58.990	ENSRROG00000039897	-	99	54.739	Rhinopithecus_roxellana
ENSPMEG00000016873	rad54b	88	37.995	YBR073W	RDH54	80	37.500	Saccharomyces_cerevisiae
ENSPMEG00000016873	rad54b	99	54.603	ENSSBOG00000028501	-	99	54.603	Saimiri_boliviensis_boliviensis
ENSPMEG00000016873	rad54b	97	58.688	ENSSHAG00000017038	-	99	55.111	Sarcophilus_harrisii
ENSPMEG00000016873	rad54b	68	72.193	ENSSFOG00015008483	rad54b	89	72.281	Scleropages_formosus
ENSPMEG00000016873	rad54b	99	82.000	ENSSMAG00000018659	rad54b	99	83.270	Scophthalmus_maximus
ENSPMEG00000016873	rad54b	96	82.962	ENSSDUG00000001122	rad54b	97	81.453	Seriola_dumerili
ENSPMEG00000016873	rad54b	99	83.565	ENSSLDG00000013787	rad54b	99	82.434	Seriola_lalandi_dorsalis
ENSPMEG00000016873	rad54b	99	58.231	ENSSPUG00000016497	-	100	58.231	Sphenodon_punctatus
ENSPMEG00000016873	rad54b	99	81.093	ENSSPAG00000012800	rad54b	99	81.093	Stegastes_partitus
ENSPMEG00000016873	rad54b	95	59.777	ENSSSCG00000006101	-	98	60.652	Sus_scrofa
ENSPMEG00000016873	rad54b	98	63.158	ENSTGUG00000011880	-	99	57.413	Taeniopygia_guttata
ENSPMEG00000016873	rad54b	99	79.797	ENSTRUG00000010015	rad54b	99	76.246	Takifugu_rubripes
ENSPMEG00000016873	rad54b	99	52.537	ENSTTRG00000006312	-	99	52.537	Tursiops_truncatus
ENSPMEG00000016873	rad54b	95	59.803	ENSUMAG00000016401	-	99	55.378	Ursus_maritimus
ENSPMEG00000016873	rad54b	94	60.853	ENSVPAG00000003157	-	99	55.158	Vicugna_pacos
ENSPMEG00000016873	rad54b	99	50.557	ENSXETG00000025924	rad54b	98	54.899	Xenopus_tropicalis
ENSPMEG00000016873	rad54b	100	89.977	ENSXMAG00000013141	rad54b	99	94.872	Xiphophorus_maculatus