EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000017009 (Gene tree)
Gene ID: 106922711
Gene Symbol: UPF2
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 28831 bases
Position: chrKQ551561.1:211801-240631
Accession: 106922711
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000030494	Upf2	PF04050.14	1.2e-32	1	1
ENSPMEP00000030490	Upf2	PF04050.14	1.3e-32	1	1
ENSPMEP00000030494	MIF4G	PF02854.19	9.9e-80	1	3
ENSPMEP00000030494	MIF4G	PF02854.19	9.9e-80	2	3
ENSPMEP00000030494	MIF4G	PF02854.19	9.9e-80	3	3
ENSPMEP00000030490	MIF4G	PF02854.19	1.1e-79	1	3
ENSPMEP00000030490	MIF4G	PF02854.19	1.1e-79	2	3
ENSPMEP00000030490	MIF4G	PF02854.19	1.1e-79	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000022569	UPF2-202	8331	XM_014995356	ENSPMEP00000030494	1275 (aa)	XP_014850842	UPI00072DF38E
ENSPMET00000022543	UPF2-201	4871	XM_014995352	ENSPMEP00000030490	1307 (aa)	XP_014850838	UPI00072DDE48

Gene Model

Click here to download ENSPMEG00000017009's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000017009's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000017009	UPF2	100	81.917	ENSG00000151461	UPF2	100	79.891	Homo_sapiens
ENSPMEG00000017009	UPF2	99	88.462	ENSAPOG00000015837	UPF2	100	88.106	Acanthochromis_polyacanthus
ENSPMEG00000017009	UPF2	100	82.371	ENSAMEG00000004586	UPF2	100	80.187	Ailuropoda_melanoleuca
ENSPMEG00000017009	UPF2	99	93.574	ENSACIG00000018078	UPF2	100	93.966	Amphilophus_citrinellus
ENSPMEG00000017009	UPF2	100	94.592	ENSAOCG00000016766	UPF2	100	94.592	Amphiprion_ocellaris
ENSPMEG00000017009	UPF2	100	94.671	ENSAPEG00000019084	UPF2	100	94.671	Amphiprion_percula
ENSPMEG00000017009	UPF2	100	93.427	ENSATEG00000021677	UPF2	99	93.818	Anabas_testudineus
ENSPMEG00000017009	UPF2	100	78.460	ENSAPLG00000010287	UPF2	90	83.004	Anas_platyrhynchos
ENSPMEG00000017009	UPF2	100	82.293	ENSACAG00000009259	UPF2	100	82.605	Anolis_carolinensis
ENSPMEG00000017009	UPF2	91	78.694	ENSANAG00000028451	UPF2	93	79.074	Aotus_nancymaae
ENSPMEG00000017009	UPF2	100	93.427	ENSACLG00000012696	UPF2	100	93.818	Astatotilapia_calliptera
ENSPMEG00000017009	UPF2	99	88.428	ENSAMXG00000013700	UPF2	99	86.083	Astyanax_mexicanus
ENSPMEG00000017009	UPF2	100	82.215	ENSBTAG00000000288	UPF2	100	80.187	Bos_taurus
ENSPMEG00000017009	UPF2	100	81.747	ENSCJAG00000020685	UPF2	100	79.953	Callithrix_jacchus
ENSPMEG00000017009	UPF2	100	82.371	ENSCAFG00000004839	UPF2	100	80.187	Canis_familiaris
ENSPMEG00000017009	UPF2	95	86.364	ENSCAFG00020005882	UPF2	98	80.039	Canis_lupus_dingo
ENSPMEG00000017009	UPF2	100	82.371	ENSCHIG00000020359	UPF2	100	80.187	Capra_hircus
ENSPMEG00000017009	UPF2	100	82.059	ENSTSYG00000000935	UPF2	97	85.311	Carlito_syrichta
ENSPMEG00000017009	UPF2	91	74.166	ENSCAPG00000016658	UPF2	95	74.274	Cavia_aperea
ENSPMEG00000017009	UPF2	99	79.167	ENSCPOG00000008809	UPF2	92	82.935	Cavia_porcellus
ENSPMEG00000017009	UPF2	100	75.741	ENSCCAG00000035991	UPF2	100	73.947	Cebus_capucinus
ENSPMEG00000017009	UPF2	100	81.917	ENSCATG00000032679	UPF2	100	79.891	Cercocebus_atys
ENSPMEG00000017009	UPF2	100	81.187	ENSCLAG00000011434	UPF2	100	80.328	Chinchilla_lanigera
ENSPMEG00000017009	UPF2	100	81.917	ENSCSAG00000013372	UPF2	100	79.891	Chlorocebus_sabaeus
ENSPMEG00000017009	UPF2	79	89.333	ENSCHOG00000000422	UPF2	83	89.333	Choloepus_hoffmanni
ENSPMEG00000017009	UPF2	99	80.986	ENSCPBG00000027823	UPF2	100	81.142	Chrysemys_picta_bellii
ENSPMEG00000017009	UPF2	79	48.869	ENSCSAVG00000007772	-	99	47.446	Ciona_savignyi
ENSPMEG00000017009	UPF2	99	76.762	ENSCANG00000040396	UPF2	100	75.039	Colobus_angolensis_palliatus
ENSPMEG00000017009	UPF2	100	81.655	ENSCGRG00001019347	Upf2	100	79.469	Cricetulus_griseus_chok1gshd
ENSPMEG00000017009	UPF2	100	81.655	ENSCGRG00000017993	Upf2	100	79.469	Cricetulus_griseus_crigri
ENSPMEG00000017009	UPF2	99	85.535	ENSCSEG00000003520	UPF2	99	84.953	Cynoglossus_semilaevis
ENSPMEG00000017009	UPF2	99	96.524	ENSCVAG00000006167	UPF2	100	96.524	Cyprinodon_variegatus
ENSPMEG00000017009	UPF2	100	82.137	ENSDNOG00000018160	UPF2	100	80.187	Dasypus_novemcinctus
ENSPMEG00000017009	UPF2	100	81.591	ENSDORG00000002478	Upf2	100	79.485	Dipodomys_ordii
ENSPMEG00000017009	UPF2	89	35.568	FBgn0029992	Upf2	73	39.164	Drosophila_melanogaster
ENSPMEG00000017009	UPF2	73	92.701	ENSETEG00000011583	-	62	92.647	Echinops_telfairi
ENSPMEG00000017009	UPF2	64	71.523	ENSEBUG00000012448	-	93	69.012	Eptatretus_burgeri
ENSPMEG00000017009	UPF2	100	81.187	ENSEASG00005019274	UPF2	100	80.406	Equus_asinus_asinus
ENSPMEG00000017009	UPF2	100	81.187	ENSECAG00000017022	UPF2	100	80.406	Equus_caballus
ENSPMEG00000017009	UPF2	82	74.214	ENSEEUG00000007819	UPF2	69	84.772	Erinaceus_europaeus
ENSPMEG00000017009	UPF2	99	87.510	ENSELUG00000012014	UPF2	100	87.051	Esox_lucius
ENSPMEG00000017009	UPF2	100	85.246	ENSFCAG00000005785	UPF2	100	80.265	Felis_catus
ENSPMEG00000017009	UPF2	100	83.307	ENSFALG00000001889	UPF2	98	83.463	Ficedula_albicollis
ENSPMEG00000017009	UPF2	100	80.718	ENSFDAG00000014348	UPF2	100	79.938	Fukomys_damarensis
ENSPMEG00000017009	UPF2	99	96.838	ENSFHEG00000009826	UPF2	100	96.838	Fundulus_heteroclitus
ENSPMEG00000017009	UPF2	99	86.115	ENSGMOG00000005557	UPF2	100	86.037	Gadus_morhua
ENSPMEG00000017009	UPF2	100	83.242	ENSGALG00000033772	UPF2	100	82.893	Gallus_gallus
ENSPMEG00000017009	UPF2	100	98.470	ENSGAFG00000020867	UPF2	100	98.470	Gambusia_affinis
ENSPMEG00000017009	UPF2	99	90.461	ENSGACG00000001080	UPF2	100	90.618	Gasterosteus_aculeatus
ENSPMEG00000017009	UPF2	100	82.059	ENSGAGG00000002700	UPF2	100	82.293	Gopherus_agassizii
ENSPMEG00000017009	UPF2	100	81.917	ENSGGOG00000001479	UPF2	100	79.891	Gorilla_gorilla
ENSPMEG00000017009	UPF2	100	93.271	ENSHBUG00000004249	UPF2	100	93.809	Haplochromis_burtoni
ENSPMEG00000017009	UPF2	100	80.796	ENSHGLG00000015176	-	100	79.938	Heterocephalus_glaber_female
ENSPMEG00000017009	UPF2	99	72.166	ENSHGLG00000003822	-	99	72.400	Heterocephalus_glaber_female
ENSPMEG00000017009	UPF2	99	78.655	ENSHGLG00100010036	UPF2	95	81.045	Heterocephalus_glaber_male
ENSPMEG00000017009	UPF2	100	89.930	ENSHCOG00000004025	UPF2	99	89.930	Hippocampus_comes
ENSPMEG00000017009	UPF2	100	87.432	ENSIPUG00000015524	UPF2	100	87.119	Ictalurus_punctatus
ENSPMEG00000017009	UPF2	100	82.215	ENSSTOG00000013075	UPF2	100	79.984	Ictidomys_tridecemlineatus
ENSPMEG00000017009	UPF2	100	78.689	ENSJJAG00000004913	Upf2	100	79.034	Jaculus_jaculus
ENSPMEG00000017009	UPF2	99	93.454	ENSKMAG00000001071	UPF2	100	93.533	Kryptolebias_marmoratus
ENSPMEG00000017009	UPF2	80	89.324	ENSLBEG00000000728	-	94	89.756	Labrus_bergylta
ENSPMEG00000017009	UPF2	100	92.019	ENSLBEG00000016394	-	99	92.801	Labrus_bergylta
ENSPMEG00000017009	UPF2	99	75.916	ENSLACG00000015945	UPF2	99	76.150	Latimeria_chalumnae
ENSPMEG00000017009	UPF2	99	87.717	ENSLOCG00000015698	UPF2	100	87.323	Lepisosteus_oculatus
ENSPMEG00000017009	UPF2	100	81.917	ENSMFAG00000043865	UPF2	100	79.891	Macaca_fascicularis
ENSPMEG00000017009	UPF2	100	81.917	ENSMMUG00000008241	UPF2	100	79.891	Macaca_mulatta
ENSPMEG00000017009	UPF2	80	82.456	ENSMNEG00000008062	UPF2	99	79.435	Macaca_nemestrina
ENSPMEG00000017009	UPF2	99	79.875	ENSMLEG00000036120	UPF2	100	77.752	Mandrillus_leucophaeus
ENSPMEG00000017009	UPF2	100	91.549	ENSMAMG00000018276	UPF2	100	93.584	Mastacembelus_armatus
ENSPMEG00000017009	UPF2	100	93.427	ENSMZEG00005021595	UPF2	100	93.818	Maylandia_zebra
ENSPMEG00000017009	UPF2	99	82.694	ENSMGAG00000004573	UPF2	99	82.422	Meleagris_gallopavo
ENSPMEG00000017009	UPF2	100	79.625	ENSMAUG00000016512	Upf2	100	77.440	Mesocricetus_auratus
ENSPMEG00000017009	UPF2	99	79.688	ENSMICG00000001716	UPF2	100	76.989	Microcebus_murinus
ENSPMEG00000017009	UPF2	100	80.625	ENSMOCG00000008263	Upf2	100	79.766	Microtus_ochrogaster
ENSPMEG00000017009	UPF2	99	88.540	ENSMMOG00000006528	UPF2	100	88.619	Mola_mola
ENSPMEG00000017009	UPF2	100	80.187	ENSMODG00000016794	UPF2	92	85.324	Monodelphis_domestica
ENSPMEG00000017009	UPF2	99	92.229	ENSMALG00000002663	UPF2	100	92.308	Monopterus_albus
ENSPMEG00000017009	UPF2	100	81.499	MGP_CAROLIEiJ_G0023157	Upf2	99	84.522	Mus_caroli
ENSPMEG00000017009	UPF2	100	81.577	ENSMUSG00000043241	Upf2	99	83.585	Mus_musculus
ENSPMEG00000017009	UPF2	100	81.811	MGP_PahariEiJ_G0019217	Upf2	100	83.396	Mus_pahari
ENSPMEG00000017009	UPF2	100	81.811	MGP_SPRETEiJ_G0024075	Upf2	100	83.585	Mus_spretus
ENSPMEG00000017009	UPF2	100	82.293	ENSMPUG00000001064	UPF2	100	80.265	Mustela_putorius_furo
ENSPMEG00000017009	UPF2	99	81.279	ENSMLUG00000000228	UPF2	100	79.283	Myotis_lucifugus
ENSPMEG00000017009	UPF2	100	93.427	ENSNBRG00000013629	UPF2	100	93.818	Neolamprologus_brichardi
ENSPMEG00000017009	UPF2	100	81.839	ENSNLEG00000012058	UPF2	100	79.813	Nomascus_leucogenys
ENSPMEG00000017009	UPF2	72	93.662	ENSOPRG00000006801	-	73	93.662	Ochotona_princeps
ENSPMEG00000017009	UPF2	100	80.763	ENSODEG00000001290	UPF2	100	79.984	Octodon_degus
ENSPMEG00000017009	UPF2	100	93.036	ENSONIG00000017991	UPF2	100	93.427	Oreochromis_niloticus
ENSPMEG00000017009	UPF2	99	79.689	ENSOCUG00000006230	UPF2	92	84.877	Oryctolagus_cuniculus
ENSPMEG00000017009	UPF2	100	91.934	ENSORLG00000017189	UPF2	100	92.091	Oryzias_latipes
ENSPMEG00000017009	UPF2	100	92.013	ENSORLG00020005969	UPF2	100	92.169	Oryzias_latipes_hni
ENSPMEG00000017009	UPF2	100	92.013	ENSORLG00015005713	UPF2	100	92.169	Oryzias_latipes_hsok
ENSPMEG00000017009	UPF2	99	88.697	ENSOMEG00000023420	UPF2	99	87.991	Oryzias_melastigma
ENSPMEG00000017009	UPF2	100	82.059	ENSOGAG00000005796	UPF2	100	79.641	Otolemur_garnettii
ENSPMEG00000017009	UPF2	100	82.243	ENSOARG00000014587	UPF2	100	80.062	Ovis_aries
ENSPMEG00000017009	UPF2	99	79.407	ENSPPAG00000037953	UPF2	100	77.241	Pan_paniscus
ENSPMEG00000017009	UPF2	100	82.449	ENSPPRG00000000690	UPF2	100	80.265	Panthera_pardus
ENSPMEG00000017009	UPF2	100	82.449	ENSPTIG00000008867	UPF2	100	80.265	Panthera_tigris_altaica
ENSPMEG00000017009	UPF2	100	81.917	ENSPTRG00000002291	UPF2	100	79.891	Pan_troglodytes
ENSPMEG00000017009	UPF2	100	81.917	ENSPANG00000023399	UPF2	100	79.891	Papio_anubis
ENSPMEG00000017009	UPF2	100	87.656	ENSPKIG00000025502	UPF2	100	86.172	Paramormyrops_kingsleyae
ENSPMEG00000017009	UPF2	59	81.291	ENSPSIG00000015158	UPF2	95	80.764	Pelodiscus_sinensis
ENSPMEG00000017009	UPF2	99	88.924	ENSPMGG00000005259	UPF2	100	88.688	Periophthalmus_magnuspinnatus
ENSPMEG00000017009	UPF2	93	74.063	ENSPEMG00000015731	Upf2	90	82.700	Peromyscus_maniculatus_bairdii
ENSPMEG00000017009	UPF2	100	82.101	ENSPCIG00000006656	UPF2	100	80.156	Phascolarctos_cinereus
ENSPMEG00000017009	UPF2	100	99.686	ENSPFOG00000017118	UPF2	100	99.686	Poecilia_formosa
ENSPMEG00000017009	UPF2	100	99.770	ENSPLAG00000005094	UPF2	100	99.770	Poecilia_latipinna
ENSPMEG00000017009	UPF2	99	97.958	ENSPREG00000021880	UPF2	100	97.958	Poecilia_reticulata
ENSPMEG00000017009	UPF2	66	84.698	ENSPPYG00000002089	-	100	85.291	Pongo_abelii
ENSPMEG00000017009	UPF2	100	69.704	ENSPCAG00000000684	UPF2	86	75.456	Procavia_capensis
ENSPMEG00000017009	UPF2	99	79.141	ENSPCOG00000021656	UPF2	100	77.535	Propithecus_coquereli
ENSPMEG00000017009	UPF2	100	75.760	ENSPVAG00000017286	UPF2	100	73.655	Pteropus_vampyrus
ENSPMEG00000017009	UPF2	99	90.831	ENSPNYG00000017096	UPF2	100	91.223	Pundamilia_nyererei
ENSPMEG00000017009	UPF2	100	88.993	ENSPNAG00000009357	UPF2	100	88.837	Pygocentrus_nattereri
ENSPMEG00000017009	UPF2	99	77.494	ENSRNOG00000023593	Upf2	100	93.333	Rattus_norvegicus
ENSPMEG00000017009	UPF2	99	80.703	ENSRBIG00000037780	UPF2	100	78.499	Rhinopithecus_bieti
ENSPMEG00000017009	UPF2	100	81.684	ENSRROG00000043547	UPF2	100	79.579	Rhinopithecus_roxellana
ENSPMEG00000017009	UPF2	100	81.669	ENSSBOG00000020012	UPF2	100	79.719	Saimiri_boliviensis_boliviensis
ENSPMEG00000017009	UPF2	100	86.261	ENSSFOG00015023788	upf2	100	86.105	Scleropages_formosus
ENSPMEG00000017009	UPF2	90	91.493	ENSSMAG00000007637	UPF2	100	90.280	Scophthalmus_maximus
ENSPMEG00000017009	UPF2	100	94.357	ENSSDUG00000017244	UPF2	99	94.357	Seriola_dumerili
ENSPMEG00000017009	UPF2	99	90.738	ENSSLDG00000016866	UPF2	100	90.502	Seriola_lalandi_dorsalis
ENSPMEG00000017009	UPF2	100	79.095	ENSSARG00000008615	UPF2	100	81.357	Sorex_araneus
ENSPMEG00000017009	UPF2	99	80.218	ENSSPUG00000014544	UPF2	99	80.530	Sphenodon_punctatus
ENSPMEG00000017009	UPF2	68	84.571	ENSSSCG00000011117	-	99	85.029	Sus_scrofa
ENSPMEG00000017009	UPF2	99	83.268	ENSTGUG00000002163	-	100	83.268	Taeniopygia_guttata
ENSPMEG00000017009	UPF2	100	91.080	ENSTRUG00000007519	UPF2	99	91.393	Takifugu_rubripes
ENSPMEG00000017009	UPF2	100	88.281	ENSTNIG00000004453	UPF2	100	88.516	Tetraodon_nigroviridis
ENSPMEG00000017009	UPF2	93	72.460	ENSTBEG00000012679	UPF2	93	72.712	Tupaia_belangeri
ENSPMEG00000017009	UPF2	100	81.343	ENSTTRG00000016388	UPF2	100	80.406	Tursiops_truncatus
ENSPMEG00000017009	UPF2	87	93.258	ENSUAMG00000023560	UPF2	98	93.258	Ursus_americanus
ENSPMEG00000017009	UPF2	100	82.371	ENSUMAG00000012953	UPF2	95	80.140	Ursus_maritimus
ENSPMEG00000017009	UPF2	82	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSPMEG00000017009	UPF2	100	82.371	ENSVVUG00000006166	UPF2	100	80.187	Vulpes_vulpes
ENSPMEG00000017009	UPF2	100	79.517	ENSXETG00000033103	UPF2	91	83.721	Xenopus_tropicalis
ENSPMEG00000017009	UPF2	99	98.822	ENSXCOG00000011604	UPF2	100	98.822	Xiphophorus_couchianus
ENSPMEG00000017009	UPF2	100	99.005	ENSXMAG00000017209	UPF2	100	99.005	Xiphophorus_maculatus