EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000017085 (Gene tree)
Gene ID: 106918726
Gene Symbol: smn1
Alias: -
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 6628 bases
Position: chrKQ551301.1:301612-308239
Accession: 106918726
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000030567	SMN	PF06003.12	1.8e-113	1	1
ENSPMEP00000030573	SMN	PF06003.12	3e-97	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000032683	-	2052	XM_014988709	ENSPMEP00000030567	283 (aa)	XP_014844195	UPI00044426AA
ENSPMET00000032681	-	774	-	ENSPMEP00000030573	257 (aa)	-	-

Gene Model

Click here to download ENSPMEG00000017085's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000017085's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000017085	smn1	93	56.846	ENSG00000205571	SMN2	83	68.421	Homo_sapiens
ENSPMEG00000017085	smn1	93	56.846	ENSG00000172062	SMN1	90	55.372	Homo_sapiens
ENSPMEG00000017085	smn1	100	82.332	ENSAPOG00000011324	smn1	100	82.332	Acanthochromis_polyacanthus
ENSPMEG00000017085	smn1	94	52.381	ENSAMEG00000003316	-	89	53.480	Ailuropoda_melanoleuca
ENSPMEG00000017085	smn1	65	79.167	ENSACIG00000007598	smn1	93	79.762	Amphilophus_citrinellus
ENSPMEG00000017085	smn1	93	76.426	ENSACIG00000019772	-	99	76.426	Amphilophus_citrinellus
ENSPMEG00000017085	smn1	100	83.039	ENSAOCG00000024444	smn1	100	83.039	Amphiprion_ocellaris
ENSPMEG00000017085	smn1	100	82.332	ENSAPEG00000016504	smn1	100	82.332	Amphiprion_percula
ENSPMEG00000017085	smn1	95	82.593	ENSATEG00000002182	smn1	82	82.593	Anabas_testudineus
ENSPMEG00000017085	smn1	66	44.388	ENSAPLG00000010912	-	96	48.454	Anas_platyrhynchos
ENSPMEG00000017085	smn1	98	50.909	ENSACAG00000010017	-	93	54.406	Anolis_carolinensis
ENSPMEG00000017085	smn1	96	51.220	ENSANAG00000032133	-	95	51.568	Aotus_nancymaae
ENSPMEG00000017085	smn1	99	78.136	ENSACLG00000007308	smn1	94	78.136	Astatotilapia_calliptera
ENSPMEG00000017085	smn1	100	61.972	ENSAMXG00000013884	smn1	100	64.460	Astyanax_mexicanus
ENSPMEG00000017085	smn1	94	52.381	ENSBTAG00000005743	SMN2	93	51.799	Bos_taurus
ENSPMEG00000017085	smn1	93	58.091	ENSCJAG00000016290	-	90	56.612	Callithrix_jacchus
ENSPMEG00000017085	smn1	94	53.480	ENSCAFG00000007812	SMN	93	53.846	Canis_familiaris
ENSPMEG00000017085	smn1	94	53.480	ENSCAFG00020019229	-	86	53.846	Canis_lupus_dingo
ENSPMEG00000017085	smn1	94	52.206	ENSCHIG00000015559	-	91	52.364	Capra_hircus
ENSPMEG00000017085	smn1	93	57.261	ENSTSYG00000012058	-	92	57.025	Carlito_syrichta
ENSPMEG00000017085	smn1	73	45.894	ENSCAPG00000011021	-	88	44.221	Cavia_aperea
ENSPMEG00000017085	smn1	94	50.896	ENSCPOG00000012328	-	93	51.613	Cavia_porcellus
ENSPMEG00000017085	smn1	94	51.460	ENSCPOG00000036973	-	92	51.825	Cavia_porcellus
ENSPMEG00000017085	smn1	93	57.676	ENSCCAG00000018127	-	90	56.198	Cebus_capucinus
ENSPMEG00000017085	smn1	93	56.846	ENSCATG00000037002	-	92	53.383	Cercocebus_atys
ENSPMEG00000017085	smn1	94	53.543	ENSCLAG00000000284	-	91	54.251	Chinchilla_lanigera
ENSPMEG00000017085	smn1	94	52.941	ENSCSAG00000015688	-	91	52.941	Chlorocebus_sabaeus
ENSPMEG00000017085	smn1	71	80.000	ENSCHOG00000007346	-	100	47.843	Choloepus_hoffmanni
ENSPMEG00000017085	smn1	96	50.694	ENSCPBG00000010968	-	96	53.600	Chrysemys_picta_bellii
ENSPMEG00000017085	smn1	93	57.261	ENSCANG00000038242	-	90	57.025	Colobus_angolensis_palliatus
ENSPMEG00000017085	smn1	94	52.263	ENSCANG00000033324	-	90	51.653	Colobus_angolensis_palliatus
ENSPMEG00000017085	smn1	94	53.704	ENSCGRG00001017959	-	93	53.846	Cricetulus_griseus_chok1gshd
ENSPMEG00000017085	smn1	94	42.164	ENSCGRG00001016998	-	91	40.364	Cricetulus_griseus_chok1gshd
ENSPMEG00000017085	smn1	94	53.704	ENSCGRG00000007698	Smn1	93	53.846	Cricetulus_griseus_crigri
ENSPMEG00000017085	smn1	97	64.561	ENSCSEG00000015227	smn1	99	64.912	Cynoglossus_semilaevis
ENSPMEG00000017085	smn1	100	90.141	ENSCVAG00000007498	smn1	100	90.141	Cyprinodon_variegatus
ENSPMEG00000017085	smn1	100	62.000	ENSDARG00000018494	smn1	100	63.574	Danio_rerio
ENSPMEG00000017085	smn1	82	46.218	ENSDNOG00000007283	-	97	47.107	Dasypus_novemcinctus
ENSPMEG00000017085	smn1	82	42.424	ENSDNOG00000045949	-	76	47.778	Dasypus_novemcinctus
ENSPMEG00000017085	smn1	93	43.939	ENSDORG00000007082	Smn1	90	44.906	Dipodomys_ordii
ENSPMEG00000017085	smn1	73	46.354	ENSETEG00000001406	-	86	47.486	Echinops_telfairi
ENSPMEG00000017085	smn1	96	38.811	ENSEBUG00000011902	smn1	96	40.845	Eptatretus_burgeri
ENSPMEG00000017085	smn1	89	46.094	ENSEASG00005018000	-	89	47.860	Equus_asinus_asinus
ENSPMEG00000017085	smn1	94	51.292	ENSECAG00000015215	-	93	52.747	Equus_caballus
ENSPMEG00000017085	smn1	88	50.570	ENSEEUG00000015777	-	100	49.035	Erinaceus_europaeus
ENSPMEG00000017085	smn1	97	68.000	ENSELUG00000018067	smn1	100	67.491	Esox_lucius
ENSPMEG00000017085	smn1	93	56.017	ENSFCAG00000028292	SMN	92	55.785	Felis_catus
ENSPMEG00000017085	smn1	95	55.797	ENSFALG00000012320	-	95	51.724	Ficedula_albicollis
ENSPMEG00000017085	smn1	94	47.163	ENSFDAG00000017683	-	92	51.237	Fukomys_damarensis
ENSPMEG00000017085	smn1	97	88.768	ENSFHEG00000018508	smn1	100	88.768	Fundulus_heteroclitus
ENSPMEG00000017085	smn1	100	62.456	ENSGMOG00000017279	smn1	98	63.604	Gadus_morhua
ENSPMEG00000017085	smn1	94	51.504	ENSGALG00000002430	SMN	95	55.814	Gallus_gallus
ENSPMEG00000017085	smn1	100	98.233	ENSGAFG00000009501	smn1	100	98.233	Gambusia_affinis
ENSPMEG00000017085	smn1	100	80.212	ENSGACG00000010584	smn1	97	78.445	Gasterosteus_aculeatus
ENSPMEG00000017085	smn1	97	35.294	ENSGAGG00000013639	-	95	39.378	Gopherus_agassizii
ENSPMEG00000017085	smn1	95	54.753	ENSGAGG00000011374	-	95	56.475	Gopherus_agassizii
ENSPMEG00000017085	smn1	90	57.082	ENSGGOG00000003872	-	93	55.794	Gorilla_gorilla
ENSPMEG00000017085	smn1	77	50.251	ENSGGOG00000026704	-	74	60.127	Gorilla_gorilla
ENSPMEG00000017085	smn1	100	80.565	ENSHBUG00000013987	smn1	100	80.565	Haplochromis_burtoni
ENSPMEG00000017085	smn1	94	47.101	ENSHGLG00000001905	-	94	50.735	Heterocephalus_glaber_female
ENSPMEG00000017085	smn1	94	50.000	ENSHGLG00000001018	-	92	50.370	Heterocephalus_glaber_female
ENSPMEG00000017085	smn1	94	50.000	ENSHGLG00100011252	-	92	50.370	Heterocephalus_glaber_male
ENSPMEG00000017085	smn1	92	47.037	ENSHGLG00100018676	-	96	50.752	Heterocephalus_glaber_male
ENSPMEG00000017085	smn1	94	67.986	ENSHCOG00000017136	smn1	89	72.453	Hippocampus_comes
ENSPMEG00000017085	smn1	100	65.278	ENSIPUG00000012580	smn1	86	65.950	Ictalurus_punctatus
ENSPMEG00000017085	smn1	91	51.154	ENSSTOG00000012288	-	93	52.075	Ictidomys_tridecemlineatus
ENSPMEG00000017085	smn1	56	50.350	ENSJJAG00000014853	-	91	46.524	Jaculus_jaculus
ENSPMEG00000017085	smn1	100	80.070	ENSKMAG00000007239	smn1	100	80.070	Kryptolebias_marmoratus
ENSPMEG00000017085	smn1	100	82.042	ENSLBEG00000022550	smn1	100	82.042	Labrus_bergylta
ENSPMEG00000017085	smn1	97	35.932	ENSLACG00000009808	-	95	35.354	Latimeria_chalumnae
ENSPMEG00000017085	smn1	98	30.952	ENSLOCG00000000801	-	94	30.903	Lepisosteus_oculatus
ENSPMEG00000017085	smn1	100	56.204	ENSLOCG00000011339	smn1	100	58.935	Lepisosteus_oculatus
ENSPMEG00000017085	smn1	94	50.725	ENSLAFG00000003425	-	99	45.333	Loxodonta_africana
ENSPMEG00000017085	smn1	93	57.676	ENSMFAG00000031523	SMN1	90	57.438	Macaca_fascicularis
ENSPMEG00000017085	smn1	94	50.000	ENSMFAG00000008812	-	91	50.000	Macaca_fascicularis
ENSPMEG00000017085	smn1	93	57.676	ENSMMUG00000020214	SMN1	90	57.438	Macaca_mulatta
ENSPMEG00000017085	smn1	94	49.265	ENSMMUG00000030594	-	91	49.275	Macaca_mulatta
ENSPMEG00000017085	smn1	93	57.676	ENSMNEG00000035094	-	90	57.438	Macaca_nemestrina
ENSPMEG00000017085	smn1	76	40.541	ENSMNEG00000036423	-	81	40.465	Macaca_nemestrina
ENSPMEG00000017085	smn1	93	57.676	ENSMLEG00000041902	-	91	57.438	Mandrillus_leucophaeus
ENSPMEG00000017085	smn1	100	80.282	ENSMAMG00000011034	smn1	100	80.282	Mastacembelus_armatus
ENSPMEG00000017085	smn1	100	80.919	ENSMZEG00005013634	smn1	100	80.919	Maylandia_zebra
ENSPMEG00000017085	smn1	69	49.490	ENSMGAG00000008889	-	94	48.691	Meleagris_gallopavo
ENSPMEG00000017085	smn1	94	50.936	ENSMAUG00000010262	Smn1	93	52.727	Mesocricetus_auratus
ENSPMEG00000017085	smn1	83	45.833	ENSMICG00000034708	-	71	60.625	Microcebus_murinus
ENSPMEG00000017085	smn1	94	53.875	ENSMOCG00000017833	Smn1	92	53.676	Microtus_ochrogaster
ENSPMEG00000017085	smn1	96	70.722	ENSMMOG00000005504	smn1	97	73.946	Mola_mola
ENSPMEG00000017085	smn1	97	51.379	ENSMODG00000001436	-	95	53.873	Monodelphis_domestica
ENSPMEG00000017085	smn1	100	82.042	ENSMALG00000008025	smn1	100	82.042	Monopterus_albus
ENSPMEG00000017085	smn1	94	54.074	MGP_CAROLIEiJ_G0018836	Smn1	93	53.480	Mus_caroli
ENSPMEG00000017085	smn1	94	53.704	ENSMUSG00000021645	Smn1	93	53.333	Mus_musculus
ENSPMEG00000017085	smn1	94	54.444	MGP_PahariEiJ_G0015911	Smn1	93	54.444	Mus_pahari
ENSPMEG00000017085	smn1	94	53.333	MGP_SPRETEiJ_G0019718	Smn1	93	52.963	Mus_spretus
ENSPMEG00000017085	smn1	92	53.383	ENSMPUG00000014470	-	93	52.364	Mustela_putorius_furo
ENSPMEG00000017085	smn1	94	52.174	ENSMLUG00000010603	-	89	52.708	Myotis_lucifugus
ENSPMEG00000017085	smn1	94	50.916	ENSNGAG00000019833	Smn1	93	51.064	Nannospalax_galili
ENSPMEG00000017085	smn1	100	82.332	ENSNBRG00000023000	smn1	100	82.332	Neolamprologus_brichardi
ENSPMEG00000017085	smn1	94	57.025	ENSNLEG00000004454	-	90	55.785	Nomascus_leucogenys
ENSPMEG00000017085	smn1	80	47.186	ENSMEUG00000011393	-	100	46.320	Notamacropus_eugenii
ENSPMEG00000017085	smn1	88	51.969	ENSOPRG00000002015	-	100	52.672	Ochotona_princeps
ENSPMEG00000017085	smn1	91	52.273	ENSODEG00000015976	-	91	51.538	Octodon_degus
ENSPMEG00000017085	smn1	100	81.979	ENSONIG00000011799	smn1	100	81.979	Oreochromis_niloticus
ENSPMEG00000017085	smn1	95	47.518	ENSOANG00000001626	-	95	53.455	Ornithorhynchus_anatinus
ENSPMEG00000017085	smn1	94	43.478	ENSOCUG00000025183	-	92	42.254	Oryctolagus_cuniculus
ENSPMEG00000017085	smn1	94	52.030	ENSOCUG00000017097	-	92	52.190	Oryctolagus_cuniculus
ENSPMEG00000017085	smn1	94	52.174	ENSOCUG00000026649	-	92	51.613	Oryctolagus_cuniculus
ENSPMEG00000017085	smn1	100	80.565	ENSORLG00000010552	smn1	100	80.565	Oryzias_latipes
ENSPMEG00000017085	smn1	100	81.081	ENSORLG00020007936	smn1	100	81.081	Oryzias_latipes_hni
ENSPMEG00000017085	smn1	100	80.565	ENSORLG00015022425	smn1	100	80.565	Oryzias_latipes_hsok
ENSPMEG00000017085	smn1	100	80.919	ENSOMEG00000007824	smn1	100	80.919	Oryzias_melastigma
ENSPMEG00000017085	smn1	91	48.134	ENSOGAG00000031414	-	92	46.886	Otolemur_garnettii
ENSPMEG00000017085	smn1	94	50.735	ENSOARG00000005425	-	97	50.725	Ovis_aries
ENSPMEG00000017085	smn1	93	55.602	ENSPPAG00000036640	-	92	52.852	Pan_paniscus
ENSPMEG00000017085	smn1	93	56.432	ENSPPRG00000005575	-	92	56.198	Panthera_pardus
ENSPMEG00000017085	smn1	93	56.432	ENSPTIG00000007745	-	92	56.198	Panthera_tigris_altaica
ENSPMEG00000017085	smn1	93	56.846	ENSPTRG00000016955	-	90	55.372	Pan_troglodytes
ENSPMEG00000017085	smn1	94	50.735	ENSPANG00000000253	-	91	50.607	Papio_anubis
ENSPMEG00000017085	smn1	94	57.438	ENSPANG00000013601	-	90	57.438	Papio_anubis
ENSPMEG00000017085	smn1	100	60.920	ENSPKIG00000011096	smn1	100	60.536	Paramormyrops_kingsleyae
ENSPMEG00000017085	smn1	92	52.015	ENSPSIG00000014787	-	83	53.516	Pelodiscus_sinensis
ENSPMEG00000017085	smn1	100	67.616	ENSPMGG00000012285	smn1	100	67.857	Periophthalmus_magnuspinnatus
ENSPMEG00000017085	smn1	92	41.636	ENSPMAG00000005004	smn1	89	40.824	Petromyzon_marinus
ENSPMEG00000017085	smn1	97	51.034	ENSPCIG00000025764	-	97	53.521	Phascolarctos_cinereus
ENSPMEG00000017085	smn1	100	100.000	ENSPFOG00000007786	smn1	100	100.000	Poecilia_formosa
ENSPMEG00000017085	smn1	100	99.647	ENSPLAG00000012071	smn1	100	99.647	Poecilia_latipinna
ENSPMEG00000017085	smn1	100	98.587	ENSPREG00000005824	smn1	100	98.587	Poecilia_reticulata
ENSPMEG00000017085	smn1	92	50.000	ENSPPYG00000015533	-	95	51.136	Pongo_abelii
ENSPMEG00000017085	smn1	88	40.161	ENSPPYG00000019189	-	99	42.478	Pongo_abelii
ENSPMEG00000017085	smn1	91	50.746	ENSPCAG00000004187	-	97	50.370	Procavia_capensis
ENSPMEG00000017085	smn1	70	51.381	ENSPCOG00000022307	-	65	58.333	Propithecus_coquereli
ENSPMEG00000017085	smn1	94	53.875	ENSPVAG00000005977	-	92	53.846	Pteropus_vampyrus
ENSPMEG00000017085	smn1	100	82.332	ENSPNYG00000014148	smn1	100	82.332	Pundamilia_nyererei
ENSPMEG00000017085	smn1	100	64.236	ENSPNAG00000014007	smn1	87	65.972	Pygocentrus_nattereri
ENSPMEG00000017085	smn1	95	52.747	ENSRNOG00000018067	Smn1	93	53.091	Rattus_norvegicus
ENSPMEG00000017085	smn1	93	57.261	ENSRBIG00000037052	-	90	57.025	Rhinopithecus_bieti
ENSPMEG00000017085	smn1	91	50.813	ENSRBIG00000036775	-	88	51.029	Rhinopithecus_bieti
ENSPMEG00000017085	smn1	94	50.199	ENSRROG00000031088	-	91	49.606	Rhinopithecus_roxellana
ENSPMEG00000017085	smn1	93	57.261	ENSRROG00000039399	-	90	57.025	Rhinopithecus_roxellana
ENSPMEG00000017085	smn1	56	57.333	ENSSBOG00000020112	-	87	46.800	Saimiri_boliviensis_boliviensis
ENSPMEG00000017085	smn1	93	58.506	ENSSBOG00000011665	-	90	57.025	Saimiri_boliviensis_boliviensis
ENSPMEG00000017085	smn1	96	51.557	ENSSHAG00000001499	-	98	52.747	Sarcophilus_harrisii
ENSPMEG00000017085	smn1	100	61.450	ENSSFOG00015015507	smn1	100	62.162	Scleropages_formosus
ENSPMEG00000017085	smn1	100	78.445	ENSSMAG00000007922	smn1	100	78.445	Scophthalmus_maximus
ENSPMEG00000017085	smn1	100	85.563	ENSSDUG00000018533	smn1	100	85.563	Seriola_dumerili
ENSPMEG00000017085	smn1	100	85.915	ENSSLDG00000021135	smn1	100	85.915	Seriola_lalandi_dorsalis
ENSPMEG00000017085	smn1	96	55.088	ENSSPUG00000000373	-	99	54.710	Sphenodon_punctatus
ENSPMEG00000017085	smn1	100	81.625	ENSSPAG00000004345	smn1	100	81.625	Stegastes_partitus
ENSPMEG00000017085	smn1	75	62.500	ENSSSCG00000029127	-	91	45.679	Sus_scrofa
ENSPMEG00000017085	smn1	94	53.506	ENSSSCG00000016970	-	92	52.857	Sus_scrofa
ENSPMEG00000017085	smn1	91	52.000	ENSTGUG00000001548	-	95	48.507	Taeniopygia_guttata
ENSPMEG00000017085	smn1	100	65.724	ENSTRUG00000000736	smn	100	68.198	Takifugu_rubripes
ENSPMEG00000017085	smn1	100	64.828	ENSTNIG00000009892	smn1	100	67.241	Tetraodon_nigroviridis
ENSPMEG00000017085	smn1	59	60.510	ENSTBEG00000002399	-	86	55.307	Tupaia_belangeri
ENSPMEG00000017085	smn1	59	58.974	ENSTTRG00000005080	-	91	52.708	Tursiops_truncatus
ENSPMEG00000017085	smn1	59	60.897	ENSUAMG00000024947	-	63	56.571	Ursus_americanus
ENSPMEG00000017085	smn1	94	53.114	ENSUMAG00000007842	-	69	54.212	Ursus_maritimus
ENSPMEG00000017085	smn1	63	77.778	ENSVPAG00000009887	-	93	49.434	Vicugna_pacos
ENSPMEG00000017085	smn1	94	53.480	ENSVVUG00000006934	-	93	53.846	Vulpes_vulpes
ENSPMEG00000017085	smn1	95	56.679	ENSXETG00000018189	smn2	95	55.789	Xenopus_tropicalis
ENSPMEG00000017085	smn1	51	65.517	ENSXETG00000004912	-	80	65.517	Xenopus_tropicalis
ENSPMEG00000017085	smn1	100	96.887	ENSXMAG00000001521	smn1	100	96.887	Xiphophorus_maculatus