EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000018146 (Gene tree)
Gene ID: 106927890
Gene Symbol: SMARCAL1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 9831 bases
Position: chrKQ551965.1:137725-147555
Accession: 106927890
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000031188	ResIII	PF04851.15	7.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000023893	SMARCAL1-201	3155	XM_015003770	ENSPMEP00000031188	889 (aa)	XP_014859256	UPI00072E89E6

Gene Model

Click here to download ENSPMEG00000018146's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000018146's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000018146	SMARCAL1	78	59.520	ENSG00000138375	SMARCAL1	99	65.217	Homo_sapiens
ENSPMEG00000018146	SMARCAL1	99	75.628	ENSAPOG00000020156	SMARCAL1	99	75.847	Acanthochromis_polyacanthus
ENSPMEG00000018146	SMARCAL1	93	75.331	ENSACIG00000001500	smarcal1	97	74.970	Amphilophus_citrinellus
ENSPMEG00000018146	SMARCAL1	97	76.121	ENSAOCG00000014266	SMARCAL1	99	76.906	Amphiprion_ocellaris
ENSPMEG00000018146	SMARCAL1	99	75.490	ENSAPEG00000015861	SMARCAL1	99	80.159	Amphiprion_percula
ENSPMEG00000018146	SMARCAL1	100	74.323	ENSATEG00000020624	SMARCAL1	100	74.106	Anabas_testudineus
ENSPMEG00000018146	SMARCAL1	94	52.581	ENSAPLG00000009864	SMARCAL1	96	63.994	Anas_platyrhynchos
ENSPMEG00000018146	SMARCAL1	100	52.328	ENSACAG00000004612	SMARCAL1	82	62.017	Anolis_carolinensis
ENSPMEG00000018146	SMARCAL1	99	76.080	ENSACLG00000015990	SMARCAL1	99	75.526	Astatotilapia_calliptera
ENSPMEG00000018146	SMARCAL1	100	65.449	ENSAMXG00000003350	smarcal1	99	65.449	Astyanax_mexicanus
ENSPMEG00000018146	SMARCAL1	96	61.769	ENSCPBG00000013599	SMARCAL1	73	62.759	Chrysemys_picta_bellii
ENSPMEG00000018146	SMARCAL1	72	49.062	ENSCING00000009308	-	99	49.062	Ciona_intestinalis
ENSPMEG00000018146	SMARCAL1	98	70.838	ENSCSEG00000010785	SMARCAL1	100	70.000	Cynoglossus_semilaevis
ENSPMEG00000018146	SMARCAL1	100	81.920	ENSCVAG00000018780	SMARCAL1	100	81.920	Cyprinodon_variegatus
ENSPMEG00000018146	SMARCAL1	62	55.977	ENSEBUG00000011906	SMARCAL1	73	55.977	Eptatretus_burgeri
ENSPMEG00000018146	SMARCAL1	80	73.464	ENSELUG00000010440	-	97	70.681	Esox_lucius
ENSPMEG00000018146	SMARCAL1	96	56.738	ENSFALG00000003981	SMARCAL1	71	64.672	Ficedula_albicollis
ENSPMEG00000018146	SMARCAL1	100	82.609	ENSFHEG00000008380	SMARCAL1	100	83.166	Fundulus_heteroclitus
ENSPMEG00000018146	SMARCAL1	59	72.066	ENSGMOG00000010034	smarcal1	90	72.066	Gadus_morhua
ENSPMEG00000018146	SMARCAL1	96	52.778	ENSGALG00000011475	RPL37A	82	63.304	Gallus_gallus
ENSPMEG00000018146	SMARCAL1	87	80.483	ENSGACG00000006073	SMARCAL1	100	82.593	Gasterosteus_aculeatus
ENSPMEG00000018146	SMARCAL1	93	53.913	ENSGAGG00000015660	SMARCAL1	70	65.798	Gopherus_agassizii
ENSPMEG00000018146	SMARCAL1	99	75.637	ENSHBUG00000002973	smarcal1	99	75.083	Haplochromis_burtoni
ENSPMEG00000018146	SMARCAL1	95	71.479	ENSHCOG00000017921	smarcal1	98	71.127	Hippocampus_comes
ENSPMEG00000018146	SMARCAL1	97	75.740	ENSKMAG00000012023	SMARCAL1	99	75.968	Kryptolebias_marmoratus
ENSPMEG00000018146	SMARCAL1	81	78.933	ENSLBEG00000022915	smarcal1	100	71.309	Labrus_bergylta
ENSPMEG00000018146	SMARCAL1	90	73.801	ENSLBEG00000003493	smarcal1	99	74.035	Labrus_bergylta
ENSPMEG00000018146	SMARCAL1	84	56.539	ENSLACG00000010974	SMARCAL1	90	51.467	Latimeria_chalumnae
ENSPMEG00000018146	SMARCAL1	93	60.900	ENSLOCG00000009637	smarcal1	99	60.592	Lepisosteus_oculatus
ENSPMEG00000018146	SMARCAL1	97	74.523	ENSMAMG00000000828	SMARCAL1	99	74.523	Mastacembelus_armatus
ENSPMEG00000018146	SMARCAL1	99	75.969	ENSMZEG00005007660	SMARCAL1	99	75.415	Maylandia_zebra
ENSPMEG00000018146	SMARCAL1	96	55.226	ENSMGAG00000011658	SMARCAL1	96	54.636	Meleagris_gallopavo
ENSPMEG00000018146	SMARCAL1	93	69.258	ENSMMOG00000003842	smarcal1	94	76.801	Mola_mola
ENSPMEG00000018146	SMARCAL1	96	52.417	ENSMODG00000015544	SMARCAL1	77	61.884	Monodelphis_domestica
ENSPMEG00000018146	SMARCAL1	93	82.454	ENSNBRG00000016273	smarcal1	97	81.740	Neolamprologus_brichardi
ENSPMEG00000018146	SMARCAL1	93	51.977	ENSMEUG00000004395	SMARCAL1	74	62.691	Notamacropus_eugenii
ENSPMEG00000018146	SMARCAL1	99	76.438	ENSONIG00000009036	smarcal1	100	84.134	Oreochromis_niloticus
ENSPMEG00000018146	SMARCAL1	100	72.088	ENSORLG00000016455	SMARCAL1	100	72.088	Oryzias_latipes
ENSPMEG00000018146	SMARCAL1	100	71.837	ENSORLG00020001610	SMARCAL1	100	71.837	Oryzias_latipes_hni
ENSPMEG00000018146	SMARCAL1	100	72.167	ENSORLG00015001865	SMARCAL1	100	72.167	Oryzias_latipes_hsok
ENSPMEG00000018146	SMARCAL1	100	72.626	ENSOMEG00000001845	smarcal1	100	72.626	Oryzias_melastigma
ENSPMEG00000018146	SMARCAL1	100	68.587	ENSPMGG00000019092	SMARCAL1	100	68.290	Periophthalmus_magnuspinnatus
ENSPMEG00000018146	SMARCAL1	78	61.351	ENSPCIG00000022514	SMARCAL1	72	62.538	Phascolarctos_cinereus
ENSPMEG00000018146	SMARCAL1	100	99.663	ENSPFOG00000000560	SMARCAL1	100	99.663	Poecilia_formosa
ENSPMEG00000018146	SMARCAL1	68	90.476	ENSPREG00000009591	SMARCAL1	97	96.092	Poecilia_reticulata
ENSPMEG00000018146	SMARCAL1	100	64.570	ENSPNAG00000014900	smarcal1	95	64.114	Pygocentrus_nattereri
ENSPMEG00000018146	SMARCAL1	88	56.327	ENSSHAG00000013538	SMARCAL1	85	56.396	Sarcophilus_harrisii
ENSPMEG00000018146	SMARCAL1	100	72.443	ENSSMAG00000010427	SMARCAL1	100	72.443	Scophthalmus_maximus
ENSPMEG00000018146	SMARCAL1	97	76.286	ENSSDUG00000017470	SMARCAL1	95	76.174	Seriola_dumerili
ENSPMEG00000018146	SMARCAL1	100	74.187	ENSSLDG00000007224	SMARCAL1	100	74.078	Seriola_lalandi_dorsalis
ENSPMEG00000018146	SMARCAL1	82	64.569	ENSSPUG00000015369	SMARCAL1	72	65.320	Sphenodon_punctatus
ENSPMEG00000018146	SMARCAL1	76	84.559	ENSSPAG00000003742	smarcal1	99	75.149	Stegastes_partitus
ENSPMEG00000018146	SMARCAL1	77	58.394	ENSSSCG00000035501	SMARCAL1	76	58.737	Sus_scrofa
ENSPMEG00000018146	SMARCAL1	77	62.463	ENSTGUG00000005079	SMARCAL1	99	62.463	Taeniopygia_guttata
ENSPMEG00000018146	SMARCAL1	97	63.883	ENSTRUG00000010701	SMARCAL1	98	64.132	Takifugu_rubripes
ENSPMEG00000018146	SMARCAL1	96	44.869	ENSTTRG00000009001	SMARCAL1	75	50.209	Tursiops_truncatus
ENSPMEG00000018146	SMARCAL1	88	60.886	ENSXETG00000000465	smarcal1	75	64.216	Xenopus_tropicalis