EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPMEG00000018309 (Gene tree)
Gene ID
106925344
Gene Symbol
cpsf3
Alias
-
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Poecilia_mexicana
Status
putative
Strand
Minus strand
Length
6756 bases
Position
chrKQ551751.1:180499-187254
Accession
106925344
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPMEP00000031250CPSF73-100_CPF11718.87e-5311
ENSPMEP00000015678CPSF73-100_CPF11718.82.2e-5011
ENSPMEP00000031250Beta-CaspPF10996.81.6e-3311
ENSPMEP00000015678Beta-CaspPF10996.81.7e-3311
ENSPMEP00000031250Lactamase_BPF00753.271.8e-1811
ENSPMEP00000015678Lactamase_BPF00753.272.1e-1811
ENSPMEP00000031250RMMBLPF07521.121.8e-2111
ENSPMEP00000015678RMMBLPF07521.121.9e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPMET00000024033-2162XM_014999638ENSPMEP00000031250685 (aa)XP_014855124UPI00072DB0E7
ENSPMET00000024065-2073-ENSPMEP00000015678690 (aa)--
Gene Model
Click here to download ENSPMEG00000018309's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000018309's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPMEG00000018309cpsf36539.648ENSPMEG00000018956ints117439.648
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPMEG00000018309cpsf39984.897ENSG00000119203CPSF310098.529Homo_sapiens
ENSPMEG00000018309cpsf37594.942ENSAPOG00000012241CPSF39294.942Acanthochromis_polyacanthus
ENSPMEG00000018309cpsf310093.878ENSAPOG00000022087cpsf310093.878Acanthochromis_polyacanthus
ENSPMEG00000018309cpsf39985.044ENSAMEG00000008493CPSF39985.044Ailuropoda_melanoleuca
ENSPMEG00000018309cpsf39184.311ENSACIG00000023663CPSF310078.437Amphilophus_citrinellus
ENSPMEG00000018309cpsf39188.640ENSACIG00000009846cpsf310082.216Amphilophus_citrinellus
ENSPMEG00000018309cpsf310093.732ENSAOCG00000022056cpsf310093.732Amphiprion_ocellaris
ENSPMEG00000018309cpsf310086.812ENSAOCG00000010077CPSF310086.812Amphiprion_ocellaris
ENSPMEG00000018309cpsf310093.878ENSAPEG00000019526cpsf310093.878Amphiprion_percula
ENSPMEG00000018309cpsf310086.812ENSAPEG00000021167CPSF310086.812Amphiprion_percula
ENSPMEG00000018309cpsf39992.836ENSATEG00000003959cpsf39992.836Anabas_testudineus
ENSPMEG00000018309cpsf39983.140ENSATEG00000014525CPSF39983.140Anabas_testudineus
ENSPMEG00000018309cpsf39784.203ENSAPLG00000006941CPSF39884.203Anas_platyrhynchos
ENSPMEG00000018309cpsf39282.362ENSACAG00000001759CPSF39982.362Anolis_carolinensis
ENSPMEG00000018309cpsf39980.059ENSANAG00000031254CPSF39980.660Aotus_nancymaae
ENSPMEG00000018309cpsf310090.169ENSACLG00000014484cpsf39993.505Astatotilapia_calliptera
ENSPMEG00000018309cpsf39184.628ENSACLG00000018846CPSF39984.628Astatotilapia_calliptera
ENSPMEG00000018309cpsf39986.792ENSAMXG00000004786cpsf39986.792Astyanax_mexicanus
ENSPMEG00000018309cpsf39985.044ENSBTAG00000019735CPSF39985.044Bos_taurus
ENSPMEG00000018309cpsf39257.298WBGene00013460cpsf-39157.298Caenorhabditis_elegans
ENSPMEG00000018309cpsf39984.751ENSCJAG00000006276CPSF39984.751Callithrix_jacchus
ENSPMEG00000018309cpsf39985.044ENSCAFG00000003375CPSF39585.044Canis_familiaris
ENSPMEG00000018309cpsf39087.540ENSCAFG00020026799CPSF39987.540Canis_lupus_dingo
ENSPMEG00000018309cpsf39985.044ENSCHIG00000013973CPSF39985.044Capra_hircus
ENSPMEG00000018309cpsf39984.897ENSTSYG00000002967CPSF39984.897Carlito_syrichta
ENSPMEG00000018309cpsf39684.835ENSCAPG00000013851CPSF39984.835Cavia_aperea
ENSPMEG00000018309cpsf39984.751ENSCPOG00000011299CPSF39984.751Cavia_porcellus
ENSPMEG00000018309cpsf39984.751ENSCCAG00000036730CPSF39984.858Cebus_capucinus
ENSPMEG00000018309cpsf39983.407ENSCATG00000014770CPSF39990.501Cercocebus_atys
ENSPMEG00000018309cpsf39984.604ENSCLAG00000002727CPSF39984.604Chinchilla_lanigera
ENSPMEG00000018309cpsf39977.126ENSCSAG00000007125CPSF39977.126Chlorocebus_sabaeus
ENSPMEG00000018309cpsf385100.000ENSCHOG00000000180CPSF38560.633Choloepus_hoffmanni
ENSPMEG00000018309cpsf39984.928ENSCPBG00000014074CPSF39984.928Chrysemys_picta_bellii
ENSPMEG00000018309cpsf39867.695ENSCING00000007214-9867.695Ciona_intestinalis
ENSPMEG00000018309cpsf39975.620ENSCANG00000034435CPSF39975.620Colobus_angolensis_palliatus
ENSPMEG00000018309cpsf39984.604ENSCGRG00001013134Cpsf39984.604Cricetulus_griseus_chok1gshd
ENSPMEG00000018309cpsf39984.604ENSCGRG00000018319Cpsf39984.604Cricetulus_griseus_crigri
ENSPMEG00000018309cpsf310085.528ENSCSEG00000002021CPSF310085.626Cynoglossus_semilaevis
ENSPMEG00000018309cpsf310086.522ENSCVAG00000015067CPSF310086.522Cyprinodon_variegatus
ENSPMEG00000018309cpsf310086.957ENSDARG00000027649cpsf310086.957Danio_rerio
ENSPMEG00000018309cpsf39983.895ENSDNOG00000008940CPSF39583.895Dasypus_novemcinctus
ENSPMEG00000018309cpsf39586.154ENSDORG00000014263Cpsf39986.154Dipodomys_ordii
ENSPMEG00000018309cpsf39966.420FBgn0261065Cpsf739966.420Drosophila_melanogaster
ENSPMEG00000018309cpsf39574.154ENSETEG00000003893CPSF39974.154Echinops_telfairi
ENSPMEG00000018309cpsf39974.330ENSEBUG00000009018cpsf39974.330Eptatretus_burgeri
ENSPMEG00000018309cpsf39985.044ENSEASG00005003970CPSF39985.044Equus_asinus_asinus
ENSPMEG00000018309cpsf39985.044ENSECAG00000019911CPSF39690.339Equus_caballus
ENSPMEG00000018309cpsf39970.235ENSEEUG00000015422CPSF39970.235Erinaceus_europaeus
ENSPMEG00000018309cpsf39989.099ENSELUG00000013775cpsf39989.099Esox_lucius
ENSPMEG00000018309cpsf39985.044ENSFCAG00000007852CPSF39985.044Felis_catus
ENSPMEG00000018309cpsf39484.235ENSFALG00000006572CPSF310084.235Ficedula_albicollis
ENSPMEG00000018309cpsf39984.435ENSFDAG00000006317CPSF39984.435Fukomys_damarensis
ENSPMEG00000018309cpsf35865.610ENSFHEG00000012186CPSF310065.610Fundulus_heteroclitus
ENSPMEG00000018309cpsf310096.939ENSFHEG00000014774cpsf310096.939Fundulus_heteroclitus
ENSPMEG00000018309cpsf310089.405ENSGMOG00000003157cpsf310089.405Gadus_morhua
ENSPMEG00000018309cpsf39984.615ENSGALG00000016424CPSF39984.615Gallus_gallus
ENSPMEG00000018309cpsf39796.474ENSGAFG00000019449cpsf310089.927Gambusia_affinis
ENSPMEG00000018309cpsf310087.391ENSGAFG00000008016CPSF310087.391Gambusia_affinis
ENSPMEG00000018309cpsf36779.657ENSGAGG00000025583CPSF39379.657Gopherus_agassizii
ENSPMEG00000018309cpsf39982.783ENSGGOG00000001757CPSF39196.146Gorilla_gorilla
ENSPMEG00000018309cpsf35878.272ENSHBUG00000014332CPSF310078.272Haplochromis_burtoni
ENSPMEG00000018309cpsf310093.586ENSHBUG00000001188cpsf310093.586Haplochromis_burtoni
ENSPMEG00000018309cpsf39984.435ENSHGLG00000000666CPSF39984.435Heterocephalus_glaber_female
ENSPMEG00000018309cpsf39984.435ENSHGLG00100007765CPSF39984.435Heterocephalus_glaber_male
ENSPMEG00000018309cpsf39991.533ENSHCOG00000007251cpsf39991.533Hippocampus_comes
ENSPMEG00000018309cpsf39985.486ENSHCOG00000015957CPSF39985.486Hippocampus_comes
ENSPMEG00000018309cpsf310087.246ENSIPUG00000023488cpsf310087.246Ictalurus_punctatus
ENSPMEG00000018309cpsf39984.604ENSSTOG00000004476CPSF39984.604Ictidomys_tridecemlineatus
ENSPMEG00000018309cpsf39984.334ENSJJAG00000023415Cpsf39984.334Jaculus_jaculus
ENSPMEG00000018309cpsf310094.461ENSKMAG00000002806cpsf310094.461Kryptolebias_marmoratus
ENSPMEG00000018309cpsf310086.087ENSKMAG00000007317CPSF310086.087Kryptolebias_marmoratus
ENSPMEG00000018309cpsf39687.976ENSLBEG00000013492CPSF39987.976Labrus_bergylta
ENSPMEG00000018309cpsf39983.895ENSLBEG00000020569cpsf39683.895Labrus_bergylta
ENSPMEG00000018309cpsf35586.364ENSLBEG00000015018-9986.364Labrus_bergylta
ENSPMEG00000018309cpsf39978.665ENSLACG00000008308CPSF39978.665Latimeria_chalumnae
ENSPMEG00000018309cpsf310086.869ENSLOCG00000016823cpsf310086.869Lepisosteus_oculatus
ENSPMEG00000018309cpsf39884.094ENSLAFG00000009467CPSF39984.094Loxodonta_africana
ENSPMEG00000018309cpsf39984.751ENSMFAG00000001339CPSF39593.154Macaca_fascicularis
ENSPMEG00000018309cpsf39384.365ENSMMUG00000018038CPSF39293.154Macaca_mulatta
ENSPMEG00000018309cpsf39096.032ENSMNEG00000039447CPSF39996.032Macaca_nemestrina
ENSPMEG00000018309cpsf39984.897ENSMLEG00000026825CPSF39296.137Mandrillus_leucophaeus
ENSPMEG00000018309cpsf39184.152ENSMAMG00000008835CPSF310078.148Mastacembelus_armatus
ENSPMEG00000018309cpsf310091.691ENSMAMG00000003076cpsf310091.691Mastacembelus_armatus
ENSPMEG00000018309cpsf310093.586ENSMZEG00005014358cpsf310093.586Maylandia_zebra
ENSPMEG00000018309cpsf310086.667ENSMZEG00005006258CPSF310086.667Maylandia_zebra
ENSPMEG00000018309cpsf39684.558ENSMGAG00000013995CPSF310084.558Meleagris_gallopavo
ENSPMEG00000018309cpsf35474.933ENSMAUG00000000166Cpsf39974.933Mesocricetus_auratus
ENSPMEG00000018309cpsf39979.971ENSMICG00000002363CPSF39979.971Microcebus_murinus
ENSPMEG00000018309cpsf39982.153ENSMOCG00000020067Cpsf39982.153Microtus_ochrogaster
ENSPMEG00000018309cpsf38070.238ENSMMOG00000011923CPSF38576.786Mola_mola
ENSPMEG00000018309cpsf39386.385ENSMMOG00000018212CPSF39886.385Mola_mola
ENSPMEG00000018309cpsf39983.454ENSMODG00000014703CPSF39983.454Monodelphis_domestica
ENSPMEG00000018309cpsf310092.857ENSMALG00000016416cpsf310092.857Monopterus_albus
ENSPMEG00000018309cpsf39282.704ENSMALG00000011474CPSF39982.704Monopterus_albus
ENSPMEG00000018309cpsf39985.191MGP_CAROLIEiJ_G0017640Cpsf39985.191Mus_caroli
ENSPMEG00000018309cpsf39985.191ENSMUSG00000054309Cpsf39697.034Mus_musculus
ENSPMEG00000018309cpsf39985.044MGP_PahariEiJ_G0029397Cpsf39985.044Mus_pahari
ENSPMEG00000018309cpsf39985.191MGP_SPRETEiJ_G0018481Cpsf39985.191Mus_spretus
ENSPMEG00000018309cpsf39985.022ENSMPUG00000013213CPSF39985.022Mustela_putorius_furo
ENSPMEG00000018309cpsf39984.919ENSMLUG00000010636CPSF39984.919Myotis_lucifugus
ENSPMEG00000018309cpsf39984.897ENSNGAG00000019836Cpsf39984.897Nannospalax_galili
ENSPMEG00000018309cpsf39184.628ENSNBRG00000010525CPSF39984.628Neolamprologus_brichardi
ENSPMEG00000018309cpsf310093.440ENSNBRG00000004770cpsf310093.440Neolamprologus_brichardi
ENSPMEG00000018309cpsf39984.751ENSNLEG00000013359CPSF39196.146Nomascus_leucogenys
ENSPMEG00000018309cpsf39954.839ENSMEUG00000013117-9954.839Notamacropus_eugenii
ENSPMEG00000018309cpsf39976.505ENSOPRG00000008902CPSF39976.505Ochotona_princeps
ENSPMEG00000018309cpsf39984.751ENSODEG00000003129CPSF39984.751Octodon_degus
ENSPMEG00000018309cpsf310093.003ENSONIG00000018812cpsf310093.003Oreochromis_niloticus
ENSPMEG00000018309cpsf38182.060ENSOANG00000008577CPSF39982.060Ornithorhynchus_anatinus
ENSPMEG00000018309cpsf39985.044ENSOCUG00000003728CPSF39985.044Oryctolagus_cuniculus
ENSPMEG00000018309cpsf310092.711ENSORLG00000018854cpsf310092.711Oryzias_latipes
ENSPMEG00000018309cpsf310092.566ENSORLG00020013331cpsf310092.566Oryzias_latipes_hni
ENSPMEG00000018309cpsf310092.711ENSORLG00015011017cpsf310092.711Oryzias_latipes_hsok
ENSPMEG00000018309cpsf310092.566ENSOMEG00000010647cpsf39692.566Oryzias_melastigma
ENSPMEG00000018309cpsf39974.927ENSOGAG00000001680CPSF39974.927Otolemur_garnettii
ENSPMEG00000018309cpsf39985.044ENSOARG00000015073CPSF39985.044Ovis_aries
ENSPMEG00000018309cpsf39984.897ENSPPAG00000042457CPSF39196.146Pan_paniscus
ENSPMEG00000018309cpsf39984.897ENSPPRG00000016790CPSF39985.044Panthera_pardus
ENSPMEG00000018309cpsf39885.272ENSPTIG00000003920CPSF39985.420Panthera_tigris_altaica
ENSPMEG00000018309cpsf39984.897ENSPTRG00000011638CPSF39196.146Pan_troglodytes
ENSPMEG00000018309cpsf39984.897ENSPANG00000016798CPSF39593.154Papio_anubis
ENSPMEG00000018309cpsf310087.101ENSPKIG00000023646cpsf310087.101Paramormyrops_kingsleyae
ENSPMEG00000018309cpsf39984.018ENSPSIG00000016144CPSF39984.018Pelodiscus_sinensis
ENSPMEG00000018309cpsf38290.106ENSPMGG00000006141-9485.691Periophthalmus_magnuspinnatus
ENSPMEG00000018309cpsf35878.465ENSPMGG00000015311CPSF310078.465Periophthalmus_magnuspinnatus
ENSPMEG00000018309cpsf39984.604ENSPEMG00000017668Cpsf39984.751Peromyscus_maniculatus_bairdii
ENSPMEG00000018309cpsf37988.950ENSPMAG00000004841cpsf39988.950Petromyzon_marinus
ENSPMEG00000018309cpsf39684.535ENSPCIG00000009823CPSF39884.816Phascolarctos_cinereus
ENSPMEG00000018309cpsf310087.101ENSPFOG00000010418-10087.101Poecilia_formosa
ENSPMEG00000018309cpsf310099.854ENSPFOG00000015922cpsf310099.854Poecilia_formosa
ENSPMEG00000018309cpsf310099.854ENSPLAG00000000882cpsf310099.854Poecilia_latipinna
ENSPMEG00000018309cpsf35879.753ENSPLAG00000021300-10079.753Poecilia_latipinna
ENSPMEG00000018309cpsf310081.858ENSPREG00000004482CPSF310081.858Poecilia_reticulata
ENSPMEG00000018309cpsf39797.436ENSPREG00000014875cpsf310090.803Poecilia_reticulata
ENSPMEG00000018309cpsf39980.645ENSPPYG00000012666CPSF39980.645Pongo_abelii
ENSPMEG00000018309cpsf38564.286ENSPCAG00000015042CPSF38964.286Procavia_capensis
ENSPMEG00000018309cpsf38788.256ENSPCOG00000023016CPSF39788.256Propithecus_coquereli
ENSPMEG00000018309cpsf39985.169ENSPVAG00000005324CPSF39985.169Pteropus_vampyrus
ENSPMEG00000018309cpsf37990.590ENSPNYG00000021047CPSF39090.590Pundamilia_nyererei
ENSPMEG00000018309cpsf310093.586ENSPNYG00000004405cpsf310093.586Pundamilia_nyererei
ENSPMEG00000018309cpsf310086.957ENSPNAG00000023060cpsf310086.957Pygocentrus_nattereri
ENSPMEG00000018309cpsf39985.169ENSRNOG00000052418Cpsf39985.169Rattus_norvegicus
ENSPMEG00000018309cpsf39979.619ENSRBIG00000041615CPSF39980.650Rhinopithecus_bieti
ENSPMEG00000018309cpsf39984.897ENSRROG00000033792CPSF39984.897Rhinopithecus_roxellana
ENSPMEG00000018309cpsf39738.672YLR277CYSH19838.672Saccharomyces_cerevisiae
ENSPMEG00000018309cpsf39681.231ENSSBOG00000027263CPSF39781.231Saimiri_boliviensis_boliviensis
ENSPMEG00000018309cpsf39984.751ENSSHAG00000007024CPSF39984.751Sarcophilus_harrisii
ENSPMEG00000018309cpsf310086.957ENSSFOG00015002108cpsf310086.957Scleropages_formosus
ENSPMEG00000018309cpsf39687.652ENSSMAG00000020534CPSF39787.652Scophthalmus_maximus
ENSPMEG00000018309cpsf310086.522ENSSDUG00000018498CPSF310086.522Seriola_dumerili
ENSPMEG00000018309cpsf310092.420ENSSDUG00000002828cpsf39792.420Seriola_dumerili
ENSPMEG00000018309cpsf310086.522ENSSLDG00000005234CPSF310086.522Seriola_lalandi_dorsalis
ENSPMEG00000018309cpsf310092.128ENSSLDG00000008469cpsf39792.128Seriola_lalandi_dorsalis
ENSPMEG00000018309cpsf38982.519ENSSARG00000005186CPSF39082.519Sorex_araneus
ENSPMEG00000018309cpsf39683.433ENSSPUG00000015525CPSF39783.433Sphenodon_punctatus
ENSPMEG00000018309cpsf310093.149ENSSPAG00000018579cpsf310093.149Stegastes_partitus
ENSPMEG00000018309cpsf310086.522ENSSPAG00000002906CPSF310086.522Stegastes_partitus
ENSPMEG00000018309cpsf39985.044ENSSSCG00000020799CPSF39985.044Sus_scrofa
ENSPMEG00000018309cpsf39984.503ENSTGUG00000013016CPSF310084.503Taeniopygia_guttata
ENSPMEG00000018309cpsf39989.912ENSTRUG00000007030cpsf39889.912Takifugu_rubripes
ENSPMEG00000018309cpsf35871.712ENSTRUG00000013905CPSF39971.712Takifugu_rubripes
ENSPMEG00000018309cpsf38489.835ENSTBEG00000002707CPSF38489.835Tupaia_belangeri
ENSPMEG00000018309cpsf38773.123ENSTTRG00000000861CPSF38773.123Tursiops_truncatus
ENSPMEG00000018309cpsf39586.086ENSUAMG00000007535CPSF39486.086Ursus_americanus
ENSPMEG00000018309cpsf39384.675ENSUMAG00000003676CPSF39489.785Ursus_maritimus
ENSPMEG00000018309cpsf39285.331ENSVPAG00000008041CPSF310085.331Vicugna_pacos
ENSPMEG00000018309cpsf39985.044ENSVVUG00000002194CPSF39985.044Vulpes_vulpes
ENSPMEG00000018309cpsf39983.019ENSXETG00000008263cpsf39983.019Xenopus_tropicalis
ENSPMEG00000018309cpsf310098.248ENSXCOG00000019695cpsf310098.248Xiphophorus_couchianus
ENSPMEG00000018309cpsf35478.495ENSXCOG00000000957-8778.495Xiphophorus_couchianus
ENSPMEG00000018309cpsf310087.536ENSXMAG00000027291CPSF310087.536Xiphophorus_maculatus
ENSPMEG00000018309cpsf310098.834ENSXMAG00000009784cpsf310098.834Xiphophorus_maculatus

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