EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000019475 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: -
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 14797 bases
Position: chrKQ552084.1:100576-115372
Accession: 106929207
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000031933	ResIII	PF04851.15	4.8e-13	1	1
ENSPMEP00000031933	DEAD	PF00270.29	4.1e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000025354	-	3267	XM_015005934	ENSPMEP00000031933	1088 (aa)	XP_014861420	-

Gene Model

Click here to download ENSPMEG00000019475's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000019475's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000019475	hfm1	72	31.695	ENSPMEG00000021166	snrnp200	72	31.695

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000019475	hfm1	92	64.306	ENSG00000162669	HFM1	71	64.306	Homo_sapiens
ENSPMEG00000019475	hfm1	78	86.093	ENSAPOG00000005304	hfm1	96	86.093	Acanthochromis_polyacanthus
ENSPMEG00000019475	hfm1	93	63.391	ENSAMEG00000000432	HFM1	71	63.391	Ailuropoda_melanoleuca
ENSPMEG00000019475	hfm1	95	74.976	ENSACIG00000021553	hfm1	94	74.976	Amphilophus_citrinellus
ENSPMEG00000019475	hfm1	76	82.688	ENSAOCG00000022839	hfm1	96	85.606	Amphiprion_ocellaris
ENSPMEG00000019475	hfm1	73	85.823	ENSAPEG00000014316	hfm1	96	85.823	Amphiprion_percula
ENSPMEG00000019475	hfm1	93	80.190	ENSATEG00000019181	hfm1	85	79.553	Anabas_testudineus
ENSPMEG00000019475	hfm1	93	61.390	ENSAPLG00000013639	HFM1	71	61.390	Anas_platyrhynchos
ENSPMEG00000019475	hfm1	92	62.610	ENSANAG00000029513	HFM1	70	62.610	Aotus_nancymaae
ENSPMEG00000019475	hfm1	95	74.071	ENSACLG00000009033	hfm1	96	79.686	Astatotilapia_calliptera
ENSPMEG00000019475	hfm1	85	71.564	ENSAMXG00000006108	hfm1	66	71.564	Astyanax_mexicanus
ENSPMEG00000019475	hfm1	92	63.178	ENSBTAG00000020856	HFM1	71	63.178	Bos_taurus
ENSPMEG00000019475	hfm1	92	63.566	ENSCJAG00000001843	HFM1	71	63.566	Callithrix_jacchus
ENSPMEG00000019475	hfm1	93	63.198	ENSCAFG00000020187	HFM1	73	61.296	Canis_familiaris
ENSPMEG00000019475	hfm1	93	63.056	ENSTSYG00000014250	HFM1	71	63.056	Carlito_syrichta
ENSPMEG00000019475	hfm1	93	61.992	ENSCPOG00000007421	HFM1	73	61.992	Cavia_porcellus
ENSPMEG00000019475	hfm1	92	62.645	ENSCCAG00000033206	HFM1	71	62.645	Cebus_capucinus
ENSPMEG00000019475	hfm1	92	63.919	ENSCATG00000030987	HFM1	71	63.919	Cercocebus_atys
ENSPMEG00000019475	hfm1	86	64.475	ENSCLAG00000005173	HFM1	63	64.475	Chinchilla_lanigera
ENSPMEG00000019475	hfm1	58	73.684	ENSCHOG00000011824	-	50	73.684	Choloepus_hoffmanni
ENSPMEG00000019475	hfm1	64	52.089	ENSCSAVG00000005094	-	100	52.089	Ciona_savignyi
ENSPMEG00000019475	hfm1	90	60.060	ENSCGRG00001016995	Hfm1	70	60.060	Cricetulus_griseus_chok1gshd
ENSPMEG00000019475	hfm1	92	61.831	ENSCGRG00000017181	Hfm1	71	61.831	Cricetulus_griseus_crigri
ENSPMEG00000019475	hfm1	95	72.133	ENSCSEG00000017659	hfm1	96	72.227	Cynoglossus_semilaevis
ENSPMEG00000019475	hfm1	65	90.155	ENSCVAG00000005075	hfm1	86	90.155	Cyprinodon_variegatus
ENSPMEG00000019475	hfm1	76	71.928	ENSDARG00000104288	hfm1	75	71.928	Danio_rerio
ENSPMEG00000019475	hfm1	86	65.672	ENSDNOG00000004776	HFM1	63	65.672	Dasypus_novemcinctus
ENSPMEG00000019475	hfm1	93	61.036	ENSDORG00000014661	Hfm1	71	61.036	Dipodomys_ordii
ENSPMEG00000019475	hfm1	91	62.624	ENSEASG00005015424	HFM1	96	62.624	Equus_asinus_asinus
ENSPMEG00000019475	hfm1	93	61.603	ENSECAG00000024039	HFM1	72	61.603	Equus_caballus
ENSPMEG00000019475	hfm1	83	74.536	ENSELUG00000018944	hfm1	97	74.536	Esox_lucius
ENSPMEG00000019475	hfm1	93	63.973	ENSFCAG00000029116	HFM1	71	63.973	Felis_catus
ENSPMEG00000019475	hfm1	88	63.552	ENSFALG00000001781	HFM1	72	61.427	Ficedula_albicollis
ENSPMEG00000019475	hfm1	86	65.319	ENSFDAG00000020816	HFM1	63	65.319	Fukomys_damarensis
ENSPMEG00000019475	hfm1	85	70.896	ENSGMOG00000017436	hfm1	97	70.896	Gadus_morhua
ENSPMEG00000019475	hfm1	95	91.246	ENSGAFG00000018093	hfm1	99	91.246	Gambusia_affinis
ENSPMEG00000019475	hfm1	85	75.745	ENSGACG00000015686	hfm1	97	75.745	Gasterosteus_aculeatus
ENSPMEG00000019475	hfm1	92	64.390	ENSGGOG00000038524	HFM1	71	64.390	Gorilla_gorilla
ENSPMEG00000019475	hfm1	95	75.477	ENSHBUG00000007309	hfm1	97	75.477	Haplochromis_burtoni
ENSPMEG00000019475	hfm1	75	77.518	ENSHCOG00000019632	hfm1	97	77.518	Hippocampus_comes
ENSPMEG00000019475	hfm1	86	71.704	ENSIPUG00000017020	hfm1	91	72.618	Ictalurus_punctatus
ENSPMEG00000019475	hfm1	86	64.530	ENSJJAG00000017198	Hfm1	67	64.530	Jaculus_jaculus
ENSPMEG00000019475	hfm1	82	80.111	ENSKMAG00000002282	hfm1	91	80.111	Kryptolebias_marmoratus
ENSPMEG00000019475	hfm1	95	73.745	ENSLBEG00000006759	hfm1	96	79.688	Labrus_bergylta
ENSPMEG00000019475	hfm1	85	65.116	ENSLACG00000010698	HFM1	100	60.882	Latimeria_chalumnae
ENSPMEG00000019475	hfm1	95	66.006	ENSLOCG00000004931	hfm1	97	66.006	Lepisosteus_oculatus
ENSPMEG00000019475	hfm1	62	71.852	ENSLAFG00000015903	-	91	71.852	Loxodonta_africana
ENSPMEG00000019475	hfm1	92	61.234	ENSMFAG00000003649	HFM1	71	61.234	Macaca_fascicularis
ENSPMEG00000019475	hfm1	92	63.919	ENSMMUG00000006819	HFM1	71	63.919	Macaca_mulatta
ENSPMEG00000019475	hfm1	74	86.136	ENSMAMG00000004623	hfm1	97	81.356	Mastacembelus_armatus
ENSPMEG00000019475	hfm1	95	74.071	ENSMZEG00005004679	hfm1	96	79.686	Maylandia_zebra
ENSPMEG00000019475	hfm1	70	68.635	ENSMGAG00000008437	HFM1	95	68.635	Meleagris_gallopavo
ENSPMEG00000019475	hfm1	93	60.718	ENSMAUG00000018858	Hfm1	71	61.009	Mesocricetus_auratus
ENSPMEG00000019475	hfm1	93	62.959	ENSMICG00000037935	HFM1	71	62.959	Microcebus_murinus
ENSPMEG00000019475	hfm1	93	61.486	ENSMOCG00000014812	Hfm1	71	61.776	Microtus_ochrogaster
ENSPMEG00000019475	hfm1	82	78.315	ENSMMOG00000006148	hfm1	92	80.987	Mola_mola
ENSPMEG00000019475	hfm1	95	74.349	ENSMALG00000002401	hfm1	94	81.280	Monopterus_albus
ENSPMEG00000019475	hfm1	78	72.131	MGP_CAROLIEiJ_G0027496	Hfm1	61	72.131	Mus_caroli
ENSPMEG00000019475	hfm1	92	60.933	ENSMUSG00000043410	Hfm1	71	60.933	Mus_musculus
ENSPMEG00000019475	hfm1	92	61.516	MGP_PahariEiJ_G0017268	Hfm1	71	61.516	Mus_pahari
ENSPMEG00000019475	hfm1	94	61.095	MGP_SPRETEiJ_G0028495	Hfm1	72	61.095	Mus_spretus
ENSPMEG00000019475	hfm1	93	61.064	ENSMPUG00000004594	HFM1	72	61.064	Mustela_putorius_furo
ENSPMEG00000019475	hfm1	93	62.286	ENSMLUG00000010200	HFM1	71	62.286	Myotis_lucifugus
ENSPMEG00000019475	hfm1	94	71.347	ENSNBRG00000002910	hfm1	97	80.218	Neolamprologus_brichardi
ENSPMEG00000019475	hfm1	92	61.187	ENSNLEG00000010285	HFM1	71	61.187	Nomascus_leucogenys
ENSPMEG00000019475	hfm1	85	60.165	ENSMEUG00000015788	HFM1	66	60.165	Notamacropus_eugenii
ENSPMEG00000019475	hfm1	79	61.772	ENSOPRG00000013916	HFM1	60	61.772	Ochotona_princeps
ENSPMEG00000019475	hfm1	91	75.516	ENSONIG00000010590	hfm1	98	75.532	Oreochromis_niloticus
ENSPMEG00000019475	hfm1	75	80.074	ENSORLG00000026844	hfm1	100	80.074	Oryzias_latipes
ENSPMEG00000019475	hfm1	85	69.551	ENSORLG00020002951	hfm1	76	68.262	Oryzias_latipes_hni
ENSPMEG00000019475	hfm1	93	71.255	ENSOMEG00000016474	hfm1	74	71.255	Oryzias_melastigma
ENSPMEG00000019475	hfm1	86	66.880	ENSOGAG00000032369	HFM1	76	66.880	Otolemur_garnettii
ENSPMEG00000019475	hfm1	92	63.450	ENSOARG00000015812	HFM1	71	63.450	Ovis_aries
ENSPMEG00000019475	hfm1	92	64.403	ENSPPAG00000024582	HFM1	77	64.403	Pan_paniscus
ENSPMEG00000019475	hfm1	93	63.452	ENSPPRG00000003270	HFM1	71	63.452	Panthera_pardus
ENSPMEG00000019475	hfm1	93	63.452	ENSPTIG00000018881	HFM1	71	63.452	Panthera_tigris_altaica
ENSPMEG00000019475	hfm1	92	64.306	ENSPTRG00000000948	HFM1	71	64.306	Pan_troglodytes
ENSPMEG00000019475	hfm1	92	63.822	ENSPANG00000009838	HFM1	71	63.822	Papio_anubis
ENSPMEG00000019475	hfm1	95	64.410	ENSPKIG00000003810	hfm1	94	72.044	Paramormyrops_kingsleyae
ENSPMEG00000019475	hfm1	76	76.000	ENSPMGG00000011059	hfm1	99	76.000	Periophthalmus_magnuspinnatus
ENSPMEG00000019475	hfm1	92	61.568	ENSPEMG00000022852	Hfm1	71	61.568	Peromyscus_maniculatus_bairdii
ENSPMEG00000019475	hfm1	93	60.037	ENSPCIG00000014233	HFM1	73	60.037	Phascolarctos_cinereus
ENSPMEG00000019475	hfm1	93	92.646	ENSPFOG00000017194	hfm1	100	92.646	Poecilia_formosa
ENSPMEG00000019475	hfm1	99	98.799	ENSPLAG00000000571	hfm1	98	98.799	Poecilia_latipinna
ENSPMEG00000019475	hfm1	99	95.802	ENSPREG00000007803	hfm1	100	95.802	Poecilia_reticulata
ENSPMEG00000019475	hfm1	92	63.751	ENSPPYG00000001163	HFM1	71	63.751	Pongo_abelii
ENSPMEG00000019475	hfm1	86	60.684	ENSPVAG00000009713	HFM1	66	60.684	Pteropus_vampyrus
ENSPMEG00000019475	hfm1	95	73.855	ENSPNYG00000001795	hfm1	96	79.565	Pundamilia_nyererei
ENSPMEG00000019475	hfm1	77	73.050	ENSPNAG00000010865	hfm1	84	73.050	Pygocentrus_nattereri
ENSPMEG00000019475	hfm1	92	61.133	ENSRNOG00000023299	Hfm1	71	61.133	Rattus_norvegicus
ENSPMEG00000019475	hfm1	92	63.460	ENSRROG00000045569	HFM1	71	63.460	Rhinopithecus_roxellana
ENSPMEG00000019475	hfm1	86	66.208	ENSSBOG00000027456	HFM1	66	66.208	Saimiri_boliviensis_boliviensis
ENSPMEG00000019475	hfm1	54	71.791	ENSSHAG00000014616	-	67	71.791	Sarcophilus_harrisii
ENSPMEG00000019475	hfm1	86	71.130	ENSSFOG00015020129	hfm1	64	71.130	Scleropages_formosus
ENSPMEG00000019475	hfm1	82	80.291	ENSSMAG00000006907	hfm1	87	80.291	Scophthalmus_maximus
ENSPMEG00000019475	hfm1	77	81.818	ENSSDUG00000011424	hfm1	94	81.818	Seriola_dumerili
ENSPMEG00000019475	hfm1	76	82.410	ENSSLDG00000016386	hfm1	92	82.410	Seriola_lalandi_dorsalis
ENSPMEG00000019475	hfm1	92	74.041	ENSSPAG00000001023	hfm1	93	82.930	Stegastes_partitus
ENSPMEG00000019475	hfm1	92	61.423	ENSSSCG00000006912	HFM1	78	61.423	Sus_scrofa
ENSPMEG00000019475	hfm1	86	64.256	ENSTGUG00000006172	HFM1	99	64.256	Taeniopygia_guttata
ENSPMEG00000019475	hfm1	93	63.060	ENSTTRG00000013933	HFM1	72	63.060	Tursiops_truncatus
ENSPMEG00000019475	hfm1	93	61.486	ENSVPAG00000011331	HFM1	71	61.486	Vicugna_pacos
ENSPMEG00000019475	hfm1	91	61.659	ENSVVUG00000020760	HFM1	99	61.659	Vulpes_vulpes
ENSPMEG00000019475	hfm1	75	94.219	ENSXMAG00000004178	hfm1	90	94.219	Xiphophorus_maculatus