EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000019543 (Gene tree)
Gene ID: 106911830
Gene Symbol: pum1 (1 of many)
Alias: -
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 22985 bases
Position: chrKQ555181.1:1351-24335
Accession: 106911830
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000016755	PUF	PF00806.19	4.3e-70	1	8
ENSPMEP00000016755	PUF	PF00806.19	4.3e-70	2	8
ENSPMEP00000016755	PUF	PF00806.19	4.3e-70	3	8
ENSPMEP00000016755	PUF	PF00806.19	4.3e-70	4	8
ENSPMEP00000016755	PUF	PF00806.19	4.3e-70	5	8
ENSPMEP00000016755	PUF	PF00806.19	4.3e-70	6	8
ENSPMEP00000016755	PUF	PF00806.19	4.3e-70	7	8
ENSPMEP00000016755	PUF	PF00806.19	4.3e-70	8	8
ENSPMEP00000016737	PUF	PF00806.19	2.9e-52	1	6
ENSPMEP00000016737	PUF	PF00806.19	2.9e-52	2	6
ENSPMEP00000016737	PUF	PF00806.19	2.9e-52	3	6
ENSPMEP00000016737	PUF	PF00806.19	2.9e-52	4	6
ENSPMEP00000016737	PUF	PF00806.19	2.9e-52	5	6
ENSPMEP00000016737	PUF	PF00806.19	2.9e-52	6	6

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000025431	-	5592	XM_014978650	ENSPMEP00000016755	1082 (aa)	XP_014834136	-
ENSPMET00000033516	-	3276	-	ENSPMEP00000016737	1091 (aa)	-	-

Gene Model

Click here to download ENSPMEG00000019543's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000019543's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000019543	pum1	99	65.000	ENSPMEG00000015766	pum2	91	69.231

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000019543	pum1	92	90.361	ENSG00000134644	PUM1	88	90.843	Homo_sapiens
ENSPMEG00000019543	pum1	99	97.479	ENSAPOG00000021632	pum1	92	97.479	Acanthochromis_polyacanthus
ENSPMEG00000019543	pum1	99	78.329	ENSAMEG00000017656	PUM1	87	77.369	Ailuropoda_melanoleuca
ENSPMEG00000019543	pum1	99	97.292	ENSACIG00000021013	pum1	93	97.292	Amphilophus_citrinellus
ENSPMEG00000019543	pum1	99	97.479	ENSAOCG00000003944	pum1	100	98.072	Amphiprion_ocellaris
ENSPMEG00000019543	pum1	99	97.479	ENSAPEG00000014550	pum1	100	98.072	Amphiprion_percula
ENSPMEG00000019543	pum1	99	96.825	ENSATEG00000016004	pum1	100	98.072	Anabas_testudineus
ENSPMEG00000019543	pum1	99	78.952	ENSAPLG00000009351	PUM1	90	77.808	Anas_platyrhynchos
ENSPMEG00000019543	pum1	99	78.065	ENSACAG00000000682	PUM1	88	77.470	Anolis_carolinensis
ENSPMEG00000019543	pum1	99	78.125	ENSANAG00000027865	PUM1	85	82.840	Aotus_nancymaae
ENSPMEG00000019543	pum1	98	97.277	ENSACLG00000019354	pum1	100	97.277	Astatotilapia_calliptera
ENSPMEG00000019543	pum1	99	82.468	ENSAMXG00000020607	pum1	88	83.117	Astyanax_mexicanus
ENSPMEG00000019543	pum1	99	78.381	ENSBTAG00000018979	PUM1	85	83.107	Bos_taurus
ENSPMEG00000019543	pum1	99	78.493	ENSCJAG00000006035	PUM1	85	83.086	Callithrix_jacchus
ENSPMEG00000019543	pum1	99	77.143	ENSCAFG00000011205	PUM1	90	76.454	Canis_familiaris
ENSPMEG00000019543	pum1	99	78.114	ENSCAFG00020024616	PUM1	95	83.086	Canis_lupus_dingo
ENSPMEG00000019543	pum1	99	78.381	ENSCHIG00000012952	PUM1	90	77.419	Capra_hircus
ENSPMEG00000019543	pum1	99	78.217	ENSTSYG00000008868	PUM1	89	81.928	Carlito_syrichta
ENSPMEG00000019543	pum1	99	78.125	ENSCPOG00000031613	PUM1	85	82.716	Cavia_porcellus
ENSPMEG00000019543	pum1	92	90.843	ENSCATG00000017991	PUM1	89	91.325	Cercocebus_atys
ENSPMEG00000019543	pum1	99	78.125	ENSCLAG00000007662	PUM1	85	82.716	Chinchilla_lanigera
ENSPMEG00000019543	pum1	99	77.161	ENSCSAG00000001028	PUM1	90	76.117	Chlorocebus_sabaeus
ENSPMEG00000019543	pum1	91	67.918	ENSCHOG00000010245	PUM1	83	67.065	Choloepus_hoffmanni
ENSPMEG00000019543	pum1	99	78.289	ENSCPBG00000009288	PUM1	99	76.226	Chrysemys_picta_bellii
ENSPMEG00000019543	pum1	92	90.361	ENSCANG00000042606	PUM1	89	90.843	Colobus_angolensis_palliatus
ENSPMEG00000019543	pum1	99	77.993	ENSCGRG00001024949	Pum1	85	82.695	Cricetulus_griseus_chok1gshd
ENSPMEG00000019543	pum1	99	77.993	ENSCGRG00000014197	Pum1	85	82.695	Cricetulus_griseus_crigri
ENSPMEG00000019543	pum1	98	95.033	ENSCSEG00000015981	pum1	100	95.220	Cynoglossus_semilaevis
ENSPMEG00000019543	pum1	99	97.666	ENSCVAG00000007043	pum1	92	97.666	Cyprinodon_variegatus
ENSPMEG00000019543	pum1	99	84.245	ENSDARG00000099256	pum1	91	82.468	Danio_rerio
ENSPMEG00000019543	pum1	99	78.676	ENSDNOG00000010939	PUM1	90	77.808	Dasypus_novemcinctus
ENSPMEG00000019543	pum1	97	72.046	ENSETEG00000004355	PUM1	87	71.662	Echinops_telfairi
ENSPMEG00000019543	pum1	99	78.473	ENSEASG00005010813	PUM1	90	77.512	Equus_asinus_asinus
ENSPMEG00000019543	pum1	99	78.309	ENSECAG00000021369	PUM1	90	77.348	Equus_caballus
ENSPMEG00000019543	pum1	73	90.000	ENSEEUG00000003871	PUM1	64	90.444	Erinaceus_europaeus
ENSPMEG00000019543	pum1	99	87.963	ENSELUG00000002409	pum1	92	96.875	Esox_lucius
ENSPMEG00000019543	pum1	99	78.401	ENSFCAG00000010374	PUM1	88	83.086	Felis_catus
ENSPMEG00000019543	pum1	99	78.408	ENSFALG00000001214	PUM1	87	77.544	Ficedula_albicollis
ENSPMEG00000019543	pum1	99	78.033	ENSFDAG00000011319	PUM1	85	82.593	Fukomys_damarensis
ENSPMEG00000019543	pum1	97	80.917	ENSGMOG00000010491	pum1	92	89.694	Gadus_morhua
ENSPMEG00000019543	pum1	95	89.940	ENSGALG00000042598	PUM1	89	89.940	Gallus_gallus
ENSPMEG00000019543	pum1	99	98.506	ENSGAFG00000015617	pum1	92	98.506	Gambusia_affinis
ENSPMEG00000019543	pum1	99	95.323	ENSGACG00000005717	pum1	92	95.042	Gasterosteus_aculeatus
ENSPMEG00000019543	pum1	95	90.141	ENSGAGG00000001290	PUM1	89	90.141	Gopherus_agassizii
ENSPMEG00000019543	pum1	92	90.361	ENSGGOG00000011983	PUM1	89	90.843	Gorilla_gorilla
ENSPMEG00000019543	pum1	99	97.292	ENSHBUG00000018718	pum1	92	97.292	Haplochromis_burtoni
ENSPMEG00000019543	pum1	99	78.033	ENSHGLG00000013819	Pum1	85	82.593	Heterocephalus_glaber_female
ENSPMEG00000019543	pum1	99	78.033	ENSHGLG00100008621	Pum1	85	82.593	Heterocephalus_glaber_male
ENSPMEG00000019543	pum1	98	89.962	ENSHCOG00000005149	pum1	100	88.649	Hippocampus_comes
ENSPMEG00000019543	pum1	99	81.659	ENSIPUG00000020421	pum1	100	76.627	Ictalurus_punctatus
ENSPMEG00000019543	pum1	99	78.381	ENSSTOG00000010757	PUM1	85	82.963	Ictidomys_tridecemlineatus
ENSPMEG00000019543	pum1	99	78.197	ENSJJAG00000000530	Pum1	85	82.716	Jaculus_jaculus
ENSPMEG00000019543	pum1	99	97.199	ENSKMAG00000003481	pum1	92	97.199	Kryptolebias_marmoratus
ENSPMEG00000019543	pum1	99	96.172	ENSLBEG00000002527	pum1	92	96.172	Labrus_bergylta
ENSPMEG00000019543	pum1	99	76.930	ENSLACG00000017188	PUM1	90	74.816	Latimeria_chalumnae
ENSPMEG00000019543	pum1	99	83.010	ENSLOCG00000005210	pum1	90	81.961	Lepisosteus_oculatus
ENSPMEG00000019543	pum1	99	78.309	ENSLAFG00000003178	PUM1	90	77.716	Loxodonta_africana
ENSPMEG00000019543	pum1	92	90.843	ENSMFAG00000010291	PUM1	89	91.325	Macaca_fascicularis
ENSPMEG00000019543	pum1	92	90.361	ENSMMUG00000013520	PUM1	89	90.843	Macaca_mulatta
ENSPMEG00000019543	pum1	92	90.361	ENSMNEG00000034639	PUM1	89	90.843	Macaca_nemestrina
ENSPMEG00000019543	pum1	92	90.361	ENSMLEG00000038743	PUM1	89	90.843	Mandrillus_leucophaeus
ENSPMEG00000019543	pum1	99	96.919	ENSMAMG00000011606	pum1	100	92.019	Mastacembelus_armatus
ENSPMEG00000019543	pum1	99	97.292	ENSMZEG00005005834	pum1	92	97.292	Maylandia_zebra
ENSPMEG00000019543	pum1	99	79.117	ENSMGAG00000000724	PUM1	90	78.157	Meleagris_gallopavo
ENSPMEG00000019543	pum1	99	78.085	ENSMAUG00000022090	Pum1	85	82.797	Mesocricetus_auratus
ENSPMEG00000019543	pum1	99	78.217	ENSMICG00000007713	-	85	82.840	Microcebus_murinus
ENSPMEG00000019543	pum1	92	89.423	ENSMICG00000012213	-	89	87.952	Microcebus_murinus
ENSPMEG00000019543	pum1	99	78.105	ENSMOCG00000015463	Pum1	85	82.695	Microtus_ochrogaster
ENSPMEG00000019543	pum1	91	97.349	ENSMMOG00000019817	pum1	57	97.349	Mola_mola
ENSPMEG00000019543	pum1	99	78.217	ENSMODG00000017067	PUM1	90	77.348	Monodelphis_domestica
ENSPMEG00000019543	pum1	99	77.829	MGP_CAROLIEiJ_G0026549	Pum1	85	82.593	Mus_caroli
ENSPMEG00000019543	pum1	99	77.829	ENSMUSG00000028580	Pum1	85	82.469	Mus_musculus
ENSPMEG00000019543	pum1	99	77.737	MGP_PahariEiJ_G0028881	Pum1	85	82.469	Mus_pahari
ENSPMEG00000019543	pum1	99	77.737	MGP_SPRETEiJ_G0027529	Pum1	85	82.346	Mus_spretus
ENSPMEG00000019543	pum1	99	78.565	ENSMPUG00000015454	PUM1	90	77.419	Mustela_putorius_furo
ENSPMEG00000019543	pum1	99	78.217	ENSMLUG00000006490	PUM1	90	76.980	Myotis_lucifugus
ENSPMEG00000019543	pum1	99	78.473	ENSNGAG00000002378	Pum1	85	82.963	Nannospalax_galili
ENSPMEG00000019543	pum1	74	98.375	ENSNBRG00000010689	pum1	86	98.375	Neolamprologus_brichardi
ENSPMEG00000019543	pum1	92	87.229	ENSNLEG00000001151	PUM1	89	87.711	Nomascus_leucogenys
ENSPMEG00000019543	pum1	70	77.931	ENSMEUG00000000976	-	59	80.108	Notamacropus_eugenii
ENSPMEG00000019543	pum1	80	91.589	ENSOPRG00000001776	PUM1	65	91.589	Ochotona_princeps
ENSPMEG00000019543	pum1	99	77.829	ENSODEG00000003465	PUM1	85	82.716	Octodon_degus
ENSPMEG00000019543	pum1	99	97.479	ENSONIG00000002290	pum1	92	97.479	Oreochromis_niloticus
ENSPMEG00000019543	pum1	91	63.535	ENSOANG00000004902	-	100	62.626	Ornithorhynchus_anatinus
ENSPMEG00000019543	pum1	99	78.269	ENSOCUG00000008641	PUM1	89	77.306	Oryctolagus_cuniculus
ENSPMEG00000019543	pum1	99	96.372	ENSORLG00000011482	pum1	92	96.372	Oryzias_latipes
ENSPMEG00000019543	pum1	99	96.372	ENSORLG00020019461	pum1	92	96.372	Oryzias_latipes_hni
ENSPMEG00000019543	pum1	99	96.465	ENSORLG00015011375	pum1	92	96.465	Oryzias_latipes_hsok
ENSPMEG00000019543	pum1	93	97.831	ENSOMEG00000009312	pum1	100	97.831	Oryzias_melastigma
ENSPMEG00000019543	pum1	99	75.321	ENSOGAG00000011063	PUM1	90	74.357	Otolemur_garnettii
ENSPMEG00000019543	pum1	99	77.665	ENSOARG00000001899	PUM1	90	76.703	Ovis_aries
ENSPMEG00000019543	pum1	92	90.361	ENSPPAG00000044003	PUM1	89	90.843	Pan_paniscus
ENSPMEG00000019543	pum1	99	78.473	ENSPPRG00000001370	PUM1	85	83.086	Panthera_pardus
ENSPMEG00000019543	pum1	99	78.289	ENSPTIG00000010798	PUM1	85	83.086	Panthera_tigris_altaica
ENSPMEG00000019543	pum1	92	90.361	ENSPTRG00000000453	PUM1	89	90.843	Pan_troglodytes
ENSPMEG00000019543	pum1	92	90.843	ENSPANG00000016338	PUM1	89	91.325	Papio_anubis
ENSPMEG00000019543	pum1	94	92.771	ENSPKIG00000010578	pum1	91	79.285	Paramormyrops_kingsleyae
ENSPMEG00000019543	pum1	99	79.025	ENSPSIG00000014118	PUM1	90	77.880	Pelodiscus_sinensis
ENSPMEG00000019543	pum1	75	96.875	ENSPMGG00000005836	pum1	92	96.875	Periophthalmus_magnuspinnatus
ENSPMEG00000019543	pum1	99	78.085	ENSPEMG00000010009	Pum1	85	82.797	Peromyscus_maniculatus_bairdii
ENSPMEG00000019543	pum1	99	78.217	ENSPCIG00000014151	PUM1	88	82.963	Phascolarctos_cinereus
ENSPMEG00000019543	pum1	99	99.441	ENSPFOG00000007289	pum1	99	99.228	Poecilia_formosa
ENSPMEG00000019543	pum1	99	96.649	ENSPLAG00000007256	pum1	91	99.683	Poecilia_latipinna
ENSPMEG00000019543	pum1	99	98.693	ENSPREG00000005195	pum1	92	100.000	Poecilia_reticulata
ENSPMEG00000019543	pum1	99	76.688	ENSPPYG00000001621	PUM1	90	75.744	Pongo_abelii
ENSPMEG00000019543	pum1	73	92.593	ENSPCAG00000001979	PUM1	64	92.593	Procavia_capensis
ENSPMEG00000019543	pum1	99	78.217	ENSPCOG00000004398	PUM1	85	82.840	Propithecus_coquereli
ENSPMEG00000019543	pum1	99	76.335	ENSPVAG00000005207	PUM1	87	75.369	Pteropus_vampyrus
ENSPMEG00000019543	pum1	99	97.386	ENSPNYG00000009518	pum1	100	92.965	Pundamilia_nyererei
ENSPMEG00000019543	pum1	99	82.746	ENSPNAG00000026728	pum1	91	83.488	Pygocentrus_nattereri
ENSPMEG00000019543	pum1	99	78.013	ENSRNOG00000011709	Pum1	90	77.051	Rattus_norvegicus
ENSPMEG00000019543	pum1	92	90.843	ENSRBIG00000042521	PUM1	89	91.325	Rhinopithecus_bieti
ENSPMEG00000019543	pum1	92	90.361	ENSRROG00000020156	PUM1	89	90.843	Rhinopithecus_roxellana
ENSPMEG00000019543	pum1	99	78.401	ENSSBOG00000032037	PUM1	86	82.295	Saimiri_boliviensis_boliviensis
ENSPMEG00000019543	pum1	99	78.125	ENSSHAG00000010918	PUM1	90	77.348	Sarcophilus_harrisii
ENSPMEG00000019543	pum1	99	95.892	ENSSMAG00000010918	pum1	100	98.072	Scophthalmus_maximus
ENSPMEG00000019543	pum1	99	97.292	ENSSDUG00000009021	pum1	92	97.292	Seriola_dumerili
ENSPMEG00000019543	pum1	93	97.672	ENSSLDG00000009667	pum1	91	97.672	Seriola_lalandi_dorsalis
ENSPMEG00000019543	pum1	92	80.909	ENSSARG00000003055	PUM1	78	80.952	Sorex_araneus
ENSPMEG00000019543	pum1	99	78.841	ENSSPUG00000006267	PUM1	90	77.696	Sphenodon_punctatus
ENSPMEG00000019543	pum1	99	97.572	ENSSPAG00000016636	pum1	100	98.072	Stegastes_partitus
ENSPMEG00000019543	pum1	99	88.531	ENSSSCG00000003591	PUM1	85	88.934	Sus_scrofa
ENSPMEG00000019543	pum1	99	96.172	ENSTRUG00000013121	pum1	92	96.875	Takifugu_rubripes
ENSPMEG00000019543	pum1	99	96.168	ENSTNIG00000016983	pum1	91	96.168	Tetraodon_nigroviridis
ENSPMEG00000019543	pum1	85	89.024	ENSTBEG00000013810	PUM1	78	89.024	Tupaia_belangeri
ENSPMEG00000019543	pum1	99	78.289	ENSTTRG00000007436	PUM1	87	77.327	Tursiops_truncatus
ENSPMEG00000019543	pum1	97	76.602	ENSUAMG00000018262	-	89	75.535	Ursus_americanus
ENSPMEG00000019543	pum1	91	83.704	ENSVPAG00000005902	PUM1	82	83.457	Vicugna_pacos
ENSPMEG00000019543	pum1	99	78.401	ENSVVUG00000014631	PUM1	90	77.440	Vulpes_vulpes
ENSPMEG00000019543	pum1	99	74.449	ENSXETG00000012904	pum1	90	73.849	Xenopus_tropicalis
ENSPMEG00000019543	pum1	99	98.506	ENSXMAG00000002945	pum1	92	98.506	Xiphophorus_maculatus