EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000019811 (Gene tree)
Gene ID: -
Gene Symbol: sf3a1
Alias: -
Full Name: splicing factor 3a%2C subunit 1
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 8616 bases
Position: chrKQ552573.1:99120-107735
Accession: ZDB-GENE-030616-156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000032120	PRP21_like_P	PF12230.8	8.8e-53	1	1
ENSPMEP00000032120	Surp	PF01805.20	1.2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000025711	-	2034	-	ENSPMEP00000032120	677 (aa)	-	-

Gene Model

Click here to download ENSPMEG00000019811's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000019811's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000019811	sf3a1	98	85.392	ENSG00000099995	SF3A1	84	86.145	Homo_sapiens
ENSPMEG00000019811	sf3a1	100	95.188	ENSAPOG00000020465	sf3a1	96	95.188	Acanthochromis_polyacanthus
ENSPMEG00000019811	sf3a1	98	85.241	ENSAMEG00000007737	SF3A1	83	85.994	Ailuropoda_melanoleuca
ENSPMEG00000019811	sf3a1	100	95.188	ENSACIG00000020672	sf3a1	96	95.188	Amphilophus_citrinellus
ENSPMEG00000019811	sf3a1	100	94.887	ENSAOCG00000003060	sf3a1	96	94.887	Amphiprion_ocellaris
ENSPMEG00000019811	sf3a1	100	95.038	ENSAPEG00000010735	sf3a1	96	95.038	Amphiprion_percula
ENSPMEG00000019811	sf3a1	98	93.383	ENSATEG00000021201	sf3a1	89	91.298	Anabas_testudineus
ENSPMEG00000019811	sf3a1	98	84.361	ENSAPLG00000009057	SF3A1	86	84.985	Anas_platyrhynchos
ENSPMEG00000019811	sf3a1	98	81.672	ENSACAG00000009415	SF3A1	97	81.818	Anolis_carolinensis
ENSPMEG00000019811	sf3a1	98	85.241	ENSANAG00000032045	SF3A1	96	85.994	Aotus_nancymaae
ENSPMEG00000019811	sf3a1	100	92.922	ENSACLG00000012622	sf3a1	96	94.578	Astatotilapia_calliptera
ENSPMEG00000019811	sf3a1	99	87.706	ENSAMXG00000005382	sf3a1	96	88.006	Astyanax_mexicanus
ENSPMEG00000019811	sf3a1	98	85.241	ENSBTAG00000003390	SF3A1	84	85.994	Bos_taurus
ENSPMEG00000019811	sf3a1	78	45.346	WBGene00004188	prp-21	76	44.630	Caenorhabditis_elegans
ENSPMEG00000019811	sf3a1	98	85.090	ENSCJAG00000010370	SF3A1	84	85.843	Callithrix_jacchus
ENSPMEG00000019811	sf3a1	98	85.241	ENSCAFG00000012559	SF3A1	84	85.994	Canis_familiaris
ENSPMEG00000019811	sf3a1	98	85.241	ENSCAFG00020000838	SF3A1	84	85.994	Canis_lupus_dingo
ENSPMEG00000019811	sf3a1	98	85.392	ENSCHIG00000018642	SF3A1	84	86.145	Capra_hircus
ENSPMEG00000019811	sf3a1	98	85.392	ENSTSYG00000004739	SF3A1	84	86.145	Carlito_syrichta
ENSPMEG00000019811	sf3a1	95	67.337	ENSCAPG00000015414	SF3A1	84	68.111	Cavia_aperea
ENSPMEG00000019811	sf3a1	98	85.090	ENSCPOG00000014589	SF3A1	84	85.843	Cavia_porcellus
ENSPMEG00000019811	sf3a1	98	85.241	ENSCCAG00000032006	SF3A1	96	85.994	Cebus_capucinus
ENSPMEG00000019811	sf3a1	98	85.392	ENSCATG00000029241	SF3A1	84	86.145	Cercocebus_atys
ENSPMEG00000019811	sf3a1	98	85.090	ENSCLAG00000006508	SF3A1	84	85.843	Chinchilla_lanigera
ENSPMEG00000019811	sf3a1	98	85.392	ENSCSAG00000009470	SF3A1	84	86.145	Chlorocebus_sabaeus
ENSPMEG00000019811	sf3a1	53	93.210	ENSCHOG00000005201	SF3A1	51	93.210	Choloepus_hoffmanni
ENSPMEG00000019811	sf3a1	98	82.530	ENSCPBG00000007595	SF3A1	84	83.759	Chrysemys_picta_bellii
ENSPMEG00000019811	sf3a1	97	49.926	ENSCING00000008526	-	84	49.627	Ciona_intestinalis
ENSPMEG00000019811	sf3a1	97	48.580	ENSCSAVG00000005608	-	87	47.741	Ciona_savignyi
ENSPMEG00000019811	sf3a1	98	85.392	ENSCANG00000033564	SF3A1	84	86.145	Colobus_angolensis_palliatus
ENSPMEG00000019811	sf3a1	98	84.488	ENSCGRG00001008933	Sf3a1	84	85.542	Cricetulus_griseus_chok1gshd
ENSPMEG00000019811	sf3a1	98	84.488	ENSCGRG00000006127	Sf3a1	84	85.542	Cricetulus_griseus_crigri
ENSPMEG00000019811	sf3a1	100	90.390	ENSCSEG00000010792	sf3a1	96	90.841	Cynoglossus_semilaevis
ENSPMEG00000019811	sf3a1	100	95.606	ENSCVAG00000004560	sf3a1	96	95.606	Cyprinodon_variegatus
ENSPMEG00000019811	sf3a1	100	86.336	ENSDARG00000041887	sf3a1	97	87.688	Danio_rerio
ENSPMEG00000019811	sf3a1	98	85.586	ENSDNOG00000010629	SF3A1	84	85.736	Dasypus_novemcinctus
ENSPMEG00000019811	sf3a1	98	85.241	ENSDORG00000005613	Sf3a1	84	85.994	Dipodomys_ordii
ENSPMEG00000019811	sf3a1	61	59.910	FBgn0266917	Sf3a1	85	47.559	Drosophila_melanogaster
ENSPMEG00000019811	sf3a1	84	83.595	ENSETEG00000017194	SF3A1	82	84.817	Echinops_telfairi
ENSPMEG00000019811	sf3a1	99	65.272	ENSEBUG00000001285	sf3a1	85	66.900	Eptatretus_burgeri
ENSPMEG00000019811	sf3a1	98	85.241	ENSEASG00005010254	SF3A1	84	85.994	Equus_asinus_asinus
ENSPMEG00000019811	sf3a1	98	85.241	ENSECAG00000023962	SF3A1	84	85.994	Equus_caballus
ENSPMEG00000019811	sf3a1	76	91.803	ENSEEUG00000003159	SF3A1	73	91.803	Erinaceus_europaeus
ENSPMEG00000019811	sf3a1	100	85.757	ENSELUG00000022578	sf3a1	96	86.807	Esox_lucius
ENSPMEG00000019811	sf3a1	98	84.940	ENSFCAG00000011932	SF3A1	84	85.693	Felis_catus
ENSPMEG00000019811	sf3a1	98	82.655	ENSFALG00000006944	SF3A1	84	84.211	Ficedula_albicollis
ENSPMEG00000019811	sf3a1	98	85.090	ENSFDAG00000009560	SF3A1	84	85.843	Fukomys_damarensis
ENSPMEG00000019811	sf3a1	100	96.386	ENSFHEG00000010866	sf3a1	96	96.386	Fundulus_heteroclitus
ENSPMEG00000019811	sf3a1	100	86.930	ENSGMOG00000016024	sf3a1	96	86.556	Gadus_morhua
ENSPMEG00000019811	sf3a1	98	84.488	ENSGALG00000007937	SF3A1	84	84.581	Gallus_gallus
ENSPMEG00000019811	sf3a1	100	98.485	ENSGAFG00000009111	sf3a1	96	98.485	Gambusia_affinis
ENSPMEG00000019811	sf3a1	100	87.946	ENSGACG00000011893	sf3a1	96	89.242	Gasterosteus_aculeatus
ENSPMEG00000019811	sf3a1	93	82.092	ENSGAGG00000000762	SF3A1	83	83.228	Gopherus_agassizii
ENSPMEG00000019811	sf3a1	98	85.392	ENSGGOG00000012631	SF3A1	84	86.145	Gorilla_gorilla
ENSPMEG00000019811	sf3a1	100	94.729	ENSHBUG00000015795	sf3a1	96	94.729	Haplochromis_burtoni
ENSPMEG00000019811	sf3a1	98	85.090	ENSHGLG00000007907	SF3A1	84	85.843	Heterocephalus_glaber_female
ENSPMEG00000019811	sf3a1	98	85.090	ENSHGLG00100013799	SF3A1	84	85.843	Heterocephalus_glaber_male
ENSPMEG00000019811	sf3a1	100	89.426	ENSHCOG00000015423	sf3a1	96	89.426	Hippocampus_comes
ENSPMEG00000019811	sf3a1	98	85.263	ENSIPUG00000002470	sf3a1	85	85.564	Ictalurus_punctatus
ENSPMEG00000019811	sf3a1	98	85.090	ENSSTOG00000013892	SF3A1	84	85.843	Ictidomys_tridecemlineatus
ENSPMEG00000019811	sf3a1	98	85.090	ENSJJAG00000022566	Sf3a1	84	85.843	Jaculus_jaculus
ENSPMEG00000019811	sf3a1	100	93.534	ENSKMAG00000002400	sf3a1	96	93.684	Kryptolebias_marmoratus
ENSPMEG00000019811	sf3a1	100	92.133	ENSLBEG00000022974	sf3a1	96	92.133	Labrus_bergylta
ENSPMEG00000019811	sf3a1	100	83.784	ENSLACG00000003565	SF3A1	97	84.084	Latimeria_chalumnae
ENSPMEG00000019811	sf3a1	100	87.538	ENSLOCG00000008251	sf3a1	96	87.688	Lepisosteus_oculatus
ENSPMEG00000019811	sf3a1	98	85.542	ENSLAFG00000000448	SF3A1	84	86.295	Loxodonta_africana
ENSPMEG00000019811	sf3a1	98	56.334	ENSLAFG00000026032	-	85	54.815	Loxodonta_africana
ENSPMEG00000019811	sf3a1	98	85.241	ENSMFAG00000031979	SF3A1	84	85.994	Macaca_fascicularis
ENSPMEG00000019811	sf3a1	98	85.241	ENSMMUG00000005547	SF3A1	84	85.994	Macaca_mulatta
ENSPMEG00000019811	sf3a1	98	85.392	ENSMNEG00000037229	SF3A1	84	86.145	Macaca_nemestrina
ENSPMEG00000019811	sf3a1	98	85.392	ENSMLEG00000041908	SF3A1	84	86.145	Mandrillus_leucophaeus
ENSPMEG00000019811	sf3a1	98	92.782	ENSMAMG00000006460	sf3a1	96	87.518	Mastacembelus_armatus
ENSPMEG00000019811	sf3a1	100	92.922	ENSMZEG00005009633	sf3a1	96	94.578	Maylandia_zebra
ENSPMEG00000019811	sf3a1	98	84.488	ENSMGAG00000001330	SF3A1	86	84.581	Meleagris_gallopavo
ENSPMEG00000019811	sf3a1	98	80.271	ENSMAUG00000020317	Sf3a1	85	81.325	Mesocricetus_auratus
ENSPMEG00000019811	sf3a1	98	85.392	ENSMICG00000010038	SF3A1	84	86.145	Microcebus_murinus
ENSPMEG00000019811	sf3a1	98	84.639	ENSMOCG00000008438	Sf3a1	96	85.693	Microtus_ochrogaster
ENSPMEG00000019811	sf3a1	100	92.547	ENSMMOG00000015588	sf3a1	97	90.526	Mola_mola
ENSPMEG00000019811	sf3a1	98	83.560	ENSMODG00000009270	SF3A1	96	84.940	Monodelphis_domestica
ENSPMEG00000019811	sf3a1	100	93.223	ENSMALG00000000148	sf3a1	96	93.976	Monopterus_albus
ENSPMEG00000019811	sf3a1	98	84.488	MGP_CAROLIEiJ_G0016029	Sf3a1	96	85.392	Mus_caroli
ENSPMEG00000019811	sf3a1	98	84.488	ENSMUSG00000002129	Sf3a1	96	85.392	Mus_musculus
ENSPMEG00000019811	sf3a1	98	84.337	MGP_PahariEiJ_G0016862	Sf3a1	96	85.392	Mus_pahari
ENSPMEG00000019811	sf3a1	98	84.488	MGP_SPRETEiJ_G0016870	Sf3a1	96	85.392	Mus_spretus
ENSPMEG00000019811	sf3a1	98	84.940	ENSMPUG00000013144	SF3A1	84	86.145	Mustela_putorius_furo
ENSPMEG00000019811	sf3a1	98	85.090	ENSMLUG00000002139	SF3A1	84	85.843	Myotis_lucifugus
ENSPMEG00000019811	sf3a1	98	85.090	ENSNGAG00000016977	Sf3a1	84	85.843	Nannospalax_galili
ENSPMEG00000019811	sf3a1	100	94.729	ENSNBRG00000016642	sf3a1	96	94.729	Neolamprologus_brichardi
ENSPMEG00000019811	sf3a1	98	85.392	ENSNLEG00000003686	SF3A1	84	86.145	Nomascus_leucogenys
ENSPMEG00000019811	sf3a1	93	74.326	ENSMEUG00000008741	SF3A1	96	74.960	Notamacropus_eugenii
ENSPMEG00000019811	sf3a1	98	85.542	ENSOPRG00000016636	SF3A1	84	86.295	Ochotona_princeps
ENSPMEG00000019811	sf3a1	98	85.090	ENSODEG00000002571	SF3A1	96	85.843	Octodon_degus
ENSPMEG00000019811	sf3a1	100	94.887	ENSONIG00000010848	sf3a1	96	94.887	Oreochromis_niloticus
ENSPMEG00000019811	sf3a1	98	85.241	ENSOCUG00000007633	SF3A1	84	85.994	Oryctolagus_cuniculus
ENSPMEG00000019811	sf3a1	95	92.247	ENSORLG00000013050	sf3a1	96	93.829	Oryzias_latipes
ENSPMEG00000019811	sf3a1	99	90.455	ENSORLG00020003236	sf3a1	94	91.284	Oryzias_latipes_hni
ENSPMEG00000019811	sf3a1	100	92.180	ENSORLG00015017411	sf3a1	96	93.534	Oryzias_latipes_hsok
ENSPMEG00000019811	sf3a1	100	93.835	ENSOMEG00000013362	sf3a1	96	93.835	Oryzias_melastigma
ENSPMEG00000019811	sf3a1	98	85.392	ENSOGAG00000012931	SF3A1	84	86.145	Otolemur_garnettii
ENSPMEG00000019811	sf3a1	98	83.735	ENSOARG00000006849	SF3A1	83	84.488	Ovis_aries
ENSPMEG00000019811	sf3a1	98	84.488	ENSPPAG00000041790	SF3A1	84	85.090	Pan_paniscus
ENSPMEG00000019811	sf3a1	98	84.940	ENSPPRG00000004391	SF3A1	84	85.693	Panthera_pardus
ENSPMEG00000019811	sf3a1	98	84.789	ENSPTIG00000000844	SF3A1	86	85.542	Panthera_tigris_altaica
ENSPMEG00000019811	sf3a1	98	85.392	ENSPTRG00000014240	SF3A1	84	86.145	Pan_troglodytes
ENSPMEG00000019811	sf3a1	98	85.392	ENSPANG00000020772	SF3A1	84	86.145	Papio_anubis
ENSPMEG00000019811	sf3a1	81	91.209	ENSPSIG00000012803	SF3A1	83	91.209	Pelodiscus_sinensis
ENSPMEG00000019811	sf3a1	97	90.015	ENSPMGG00000023096	sf3a1	87	91.088	Periophthalmus_magnuspinnatus
ENSPMEG00000019811	sf3a1	98	84.639	ENSPEMG00000009494	Sf3a1	84	85.693	Peromyscus_maniculatus_bairdii
ENSPMEG00000019811	sf3a1	62	81.324	ENSPMAG00000007139	-	72	81.324	Petromyzon_marinus
ENSPMEG00000019811	sf3a1	98	83.560	ENSPCIG00000022692	SF3A1	96	84.940	Phascolarctos_cinereus
ENSPMEG00000019811	sf3a1	98	99.096	ENSPFOG00000016768	sf3a1	85	99.096	Poecilia_formosa
ENSPMEG00000019811	sf3a1	100	99.096	ENSPLAG00000017268	sf3a1	96	99.096	Poecilia_latipinna
ENSPMEG00000019811	sf3a1	100	98.795	ENSPREG00000010347	sf3a1	96	98.795	Poecilia_reticulata
ENSPMEG00000019811	sf3a1	98	85.392	ENSPPYG00000011707	SF3A1	84	86.145	Pongo_abelii
ENSPMEG00000019811	sf3a1	67	84.298	ENSPCAG00000003266	SF3A1	57	84.298	Procavia_capensis
ENSPMEG00000019811	sf3a1	98	85.090	ENSPCOG00000026630	SF3A1	84	85.843	Propithecus_coquereli
ENSPMEG00000019811	sf3a1	98	84.036	ENSPVAG00000017719	SF3A1	84	84.789	Pteropus_vampyrus
ENSPMEG00000019811	sf3a1	100	94.578	ENSPNYG00000018706	sf3a1	96	94.578	Pundamilia_nyererei
ENSPMEG00000019811	sf3a1	98	87.256	ENSPNAG00000003721	sf3a1	96	87.706	Pygocentrus_nattereri
ENSPMEG00000019811	sf3a1	98	84.337	ENSRNOG00000005218	Sf3a1	84	85.241	Rattus_norvegicus
ENSPMEG00000019811	sf3a1	98	85.241	ENSRBIG00000032167	SF3A1	84	85.994	Rhinopithecus_bieti
ENSPMEG00000019811	sf3a1	98	85.241	ENSRROG00000044908	SF3A1	84	85.994	Rhinopithecus_roxellana
ENSPMEG00000019811	sf3a1	98	85.241	ENSSBOG00000021960	SF3A1	98	85.994	Saimiri_boliviensis_boliviensis
ENSPMEG00000019811	sf3a1	98	80.543	ENSSHAG00000003666	SF3A1	84	82.078	Sarcophilus_harrisii
ENSPMEG00000019811	sf3a1	100	90.105	ENSSFOG00015004579	sf3a1	96	91.004	Scleropages_formosus
ENSPMEG00000019811	sf3a1	100	90.045	ENSSMAG00000004275	sf3a1	96	90.498	Scophthalmus_maximus
ENSPMEG00000019811	sf3a1	100	93.684	ENSSDUG00000022219	sf3a1	96	93.684	Seriola_dumerili
ENSPMEG00000019811	sf3a1	100	93.684	ENSSLDG00000012642	sf3a1	96	93.684	Seriola_lalandi_dorsalis
ENSPMEG00000019811	sf3a1	98	81.627	ENSSARG00000005960	SF3A1	86	82.380	Sorex_araneus
ENSPMEG00000019811	sf3a1	98	82.641	ENSSPUG00000018863	SF3A1	84	84.296	Sphenodon_punctatus
ENSPMEG00000019811	sf3a1	100	94.586	ENSSPAG00000011856	sf3a1	96	94.586	Stegastes_partitus
ENSPMEG00000019811	sf3a1	98	84.940	ENSSSCG00000010002	SF3A1	84	85.994	Sus_scrofa
ENSPMEG00000019811	sf3a1	98	84.234	ENSTGUG00000010547	SF3A1	86	84.858	Taeniopygia_guttata
ENSPMEG00000019811	sf3a1	100	88.956	ENSTRUG00000006118	sf3a1	96	88.956	Takifugu_rubripes
ENSPMEG00000019811	sf3a1	68	86.842	ENSTNIG00000005713	sf3a1	83	89.381	Tetraodon_nigroviridis
ENSPMEG00000019811	sf3a1	98	77.711	ENSTBEG00000012771	SF3A1	84	78.464	Tupaia_belangeri
ENSPMEG00000019811	sf3a1	98	85.392	ENSTTRG00000001535	SF3A1	84	86.145	Tursiops_truncatus
ENSPMEG00000019811	sf3a1	97	84.043	ENSUAMG00000006750	SF3A1	83	84.802	Ursus_americanus
ENSPMEG00000019811	sf3a1	98	85.241	ENSUMAG00000016665	SF3A1	98	82.681	Ursus_maritimus
ENSPMEG00000019811	sf3a1	98	85.241	ENSVVUG00000003075	SF3A1	84	85.994	Vulpes_vulpes
ENSPMEG00000019811	sf3a1	98	79.549	ENSXETG00000016144	sf3a1	86	91.870	Xenopus_tropicalis
ENSPMEG00000019811	sf3a1	100	98.182	ENSXCOG00000015653	sf3a1	96	98.182	Xiphophorus_couchianus
ENSPMEG00000019811	sf3a1	100	98.333	ENSXMAG00000002753	sf3a1	96	98.333	Xiphophorus_maculatus