EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000020547 (Gene tree)
Gene ID: 106908092
Gene Symbol: ptcd1
Alias: -
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 5715 bases
Position: chrKQ551065.1:213537-219251
Accession: 106908092
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000032588	PPR	PF01535.20	3.1e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000033898	-	4007	XM_014974071	ENSPMEP00000032588	700 (aa)	XP_014829557	UPI00072E3E4E

Gene Model

Click here to download ENSPMEG00000020547's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000020547's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000020547	ptcd1	85	45.120	ENSG00000106246	PTCD1	86	46.166	Homo_sapiens
ENSPMEG00000020547	ptcd1	85	45.120	ENSG00000248919	ATP5MF-PTCD1	78	46.578	Homo_sapiens
ENSPMEG00000020547	ptcd1	88	62.921	ENSAPOG00000010679	ptcd1	96	62.600	Acanthochromis_polyacanthus
ENSPMEG00000020547	ptcd1	82	48.833	ENSAMEG00000006224	-	78	48.833	Ailuropoda_melanoleuca
ENSPMEG00000020547	ptcd1	87	70.161	ENSACIG00000017861	ptcd1	90	70.161	Amphilophus_citrinellus
ENSPMEG00000020547	ptcd1	87	64.687	ENSAOCG00000022617	ptcd1	93	64.687	Amphiprion_ocellaris
ENSPMEG00000020547	ptcd1	98	62.947	ENSAOCG00000020741	-	98	62.589	Amphiprion_ocellaris
ENSPMEG00000020547	ptcd1	99	62.166	ENSAPEG00000022632	ptcd1	99	61.905	Amphiprion_percula
ENSPMEG00000020547	ptcd1	95	64.741	ENSATEG00000007016	ptcd1	94	64.689	Anabas_testudineus
ENSPMEG00000020547	ptcd1	82	47.179	ENSAPLG00000006862	-	91	47.179	Anas_platyrhynchos
ENSPMEG00000020547	ptcd1	87	45.899	ENSACAG00000012871	-	80	46.732	Anolis_carolinensis
ENSPMEG00000020547	ptcd1	82	47.333	ENSANAG00000035790	-	86	47.264	Aotus_nancymaae
ENSPMEG00000020547	ptcd1	99	65.830	ENSACLG00000002824	ptcd1	99	65.830	Astatotilapia_calliptera
ENSPMEG00000020547	ptcd1	88	48.792	ENSAMXG00000037292	ptcd1	87	50.560	Astyanax_mexicanus
ENSPMEG00000020547	ptcd1	84	47.258	ENSBTAG00000020440	-	75	47.419	Bos_taurus
ENSPMEG00000020547	ptcd1	86	45.723	ENSCJAG00000015815	-	90	45.723	Callithrix_jacchus
ENSPMEG00000020547	ptcd1	86	47.476	ENSCAFG00000015055	-	83	47.476	Canis_familiaris
ENSPMEG00000020547	ptcd1	86	47.476	ENSCAFG00020014480	-	83	47.476	Canis_lupus_dingo
ENSPMEG00000020547	ptcd1	92	45.858	ENSCHIG00000027000	-	93	45.562	Capra_hircus
ENSPMEG00000020547	ptcd1	82	46.589	ENSTSYG00000029495	-	84	46.523	Carlito_syrichta
ENSPMEG00000020547	ptcd1	83	47.587	ENSCAPG00000014660	-	90	47.587	Cavia_aperea
ENSPMEG00000020547	ptcd1	83	48.253	ENSCPOG00000001780	-	85	48.253	Cavia_porcellus
ENSPMEG00000020547	ptcd1	82	48.485	ENSCCAG00000034025	-	84	48.241	Cebus_capucinus
ENSPMEG00000020547	ptcd1	82	48.567	ENSCATG00000040859	-	90	46.865	Cercocebus_atys
ENSPMEG00000020547	ptcd1	82	48.744	ENSCLAG00000006354	-	84	48.264	Chinchilla_lanigera
ENSPMEG00000020547	ptcd1	77	46.466	ENSCSAG00000017794	-	82	46.749	Chlorocebus_sabaeus
ENSPMEG00000020547	ptcd1	83	45.984	ENSCPBG00000020866	-	85	45.984	Chrysemys_picta_bellii
ENSPMEG00000020547	ptcd1	86	44.757	ENSCANG00000023441	-	90	44.914	Colobus_angolensis_palliatus
ENSPMEG00000020547	ptcd1	83	47.549	ENSCGRG00001023686	Ptcd1	83	47.754	Cricetulus_griseus_chok1gshd
ENSPMEG00000020547	ptcd1	83	47.549	ENSCGRG00000015031	Ptcd1	83	47.754	Cricetulus_griseus_crigri
ENSPMEG00000020547	ptcd1	92	60.511	ENSCSEG00000002378	ptcd1	93	60.661	Cynoglossus_semilaevis
ENSPMEG00000020547	ptcd1	99	75.000	ENSCVAG00000015826	ptcd1	99	74.646	Cyprinodon_variegatus
ENSPMEG00000020547	ptcd1	93	75.767	ENSCVAG00000003621	ptcd1	98	75.767	Cyprinodon_variegatus
ENSPMEG00000020547	ptcd1	92	48.353	ENSDARG00000076176	ptcd1	94	48.209	Danio_rerio
ENSPMEG00000020547	ptcd1	82	48.662	ENSDNOG00000009957	-	84	48.425	Dasypus_novemcinctus
ENSPMEG00000020547	ptcd1	82	45.605	ENSDORG00000000740	Ptcd1	86	45.827	Dipodomys_ordii
ENSPMEG00000020547	ptcd1	83	38.949	ENSEBUG00000014515	ptcd1	93	39.535	Eptatretus_burgeri
ENSPMEG00000020547	ptcd1	82	48.760	ENSEASG00005002480	-	86	48.089	Equus_asinus_asinus
ENSPMEG00000020547	ptcd1	82	48.926	ENSECAG00000016617	-	86	48.183	Equus_caballus
ENSPMEG00000020547	ptcd1	84	58.054	ENSELUG00000016517	ptcd1	82	58.509	Esox_lucius
ENSPMEG00000020547	ptcd1	86	46.929	ENSFCAG00000015069	-	89	47.087	Felis_catus
ENSPMEG00000020547	ptcd1	89	44.294	ENSFALG00000013803	-	91	44.713	Ficedula_albicollis
ENSPMEG00000020547	ptcd1	84	48.232	ENSFDAG00000006393	-	86	48.232	Fukomys_damarensis
ENSPMEG00000020547	ptcd1	79	78.727	ENSFHEG00000012491	ptcd1	95	78.727	Fundulus_heteroclitus
ENSPMEG00000020547	ptcd1	87	61.798	ENSGMOG00000007639	ptcd1	98	61.637	Gadus_morhua
ENSPMEG00000020547	ptcd1	82	46.711	ENSGALG00000004711	-	84	46.865	Gallus_gallus
ENSPMEG00000020547	ptcd1	99	90.701	ENSGAFG00000013175	ptcd1	100	90.701	Gambusia_affinis
ENSPMEG00000020547	ptcd1	90	66.983	ENSGACG00000016607	ptcd1	97	67.035	Gasterosteus_aculeatus
ENSPMEG00000020547	ptcd1	78	47.007	ENSGAGG00000021832	-	84	46.918	Gopherus_agassizii
ENSPMEG00000020547	ptcd1	85	45.048	ENSGGOG00000015123	-	86	46.166	Gorilla_gorilla
ENSPMEG00000020547	ptcd1	91	69.066	ENSHBUG00000018275	ptcd1	91	69.066	Haplochromis_burtoni
ENSPMEG00000020547	ptcd1	87	47.261	ENSHGLG00000017621	-	89	47.418	Heterocephalus_glaber_female
ENSPMEG00000020547	ptcd1	87	47.261	ENSHGLG00100007218	-	89	47.418	Heterocephalus_glaber_male
ENSPMEG00000020547	ptcd1	92	58.423	ENSHCOG00000010784	ptcd1	92	58.796	Hippocampus_comes
ENSPMEG00000020547	ptcd1	84	48.046	ENSSTOG00000001682	-	89	47.410	Ictidomys_tridecemlineatus
ENSPMEG00000020547	ptcd1	89	45.152	ENSJJAG00000000319	Ptcd1	89	46.069	Jaculus_jaculus
ENSPMEG00000020547	ptcd1	94	69.254	ENSKMAG00000008708	ptcd1	94	68.806	Kryptolebias_marmoratus
ENSPMEG00000020547	ptcd1	99	61.833	ENSLBEG00000008061	ptcd1	99	61.330	Labrus_bergylta
ENSPMEG00000020547	ptcd1	84	49.261	ENSLACG00000011172	ptcd1	82	49.915	Latimeria_chalumnae
ENSPMEG00000020547	ptcd1	85	49.768	ENSLOCG00000004833	ptcd1	93	50.251	Lepisosteus_oculatus
ENSPMEG00000020547	ptcd1	83	47.195	ENSLAFG00000002588	-	85	47.195	Loxodonta_africana
ENSPMEG00000020547	ptcd1	82	48.567	ENSMFAG00000041324	-	90	46.865	Macaca_fascicularis
ENSPMEG00000020547	ptcd1	86	46.395	ENSMMUG00000030408	-	90	46.708	Macaca_mulatta
ENSPMEG00000020547	ptcd1	82	48.567	ENSMNEG00000043786	-	90	46.865	Macaca_nemestrina
ENSPMEG00000020547	ptcd1	82	36.519	ENSMLEG00000031179	-	81	36.842	Mandrillus_leucophaeus
ENSPMEG00000020547	ptcd1	99	63.510	ENSMAMG00000007623	ptcd1	97	63.370	Mastacembelus_armatus
ENSPMEG00000020547	ptcd1	99	65.690	ENSMZEG00005012722	ptcd1	99	65.690	Maylandia_zebra
ENSPMEG00000020547	ptcd1	81	47.167	ENSMGAG00000004211	-	75	47.513	Meleagris_gallopavo
ENSPMEG00000020547	ptcd1	82	46.566	ENSMICG00000017428	-	84	46.922	Microcebus_murinus
ENSPMEG00000020547	ptcd1	99	64.779	ENSMMOG00000020243	ptcd1	94	70.636	Mola_mola
ENSPMEG00000020547	ptcd1	82	46.470	ENSMODG00000001350	-	82	46.470	Monodelphis_domestica
ENSPMEG00000020547	ptcd1	99	62.742	ENSMALG00000018442	ptcd1	98	62.989	Monopterus_albus
ENSPMEG00000020547	ptcd1	87	45.963	MGP_CAROLIEiJ_G0028011	Ptcd1	91	45.963	Mus_caroli
ENSPMEG00000020547	ptcd1	87	44.632	ENSMUSG00000029624	Ptcd1	91	45.342	Mus_musculus
ENSPMEG00000020547	ptcd1	82	48.398	MGP_PahariEiJ_G0024580	Ptcd1	84	48.398	Mus_pahari
ENSPMEG00000020547	ptcd1	87	44.939	MGP_SPRETEiJ_G0029012	Ptcd1	91	45.963	Mus_spretus
ENSPMEG00000020547	ptcd1	92	45.255	ENSMPUG00000016518	-	95	46.559	Mustela_putorius_furo
ENSPMEG00000020547	ptcd1	82	49.079	ENSMLUG00000010994	-	78	49.167	Myotis_lucifugus
ENSPMEG00000020547	ptcd1	97	63.766	ENSNBRG00000010079	ptcd1	95	67.071	Neolamprologus_brichardi
ENSPMEG00000020547	ptcd1	72	46.780	ENSNLEG00000011060	-	88	46.780	Nomascus_leucogenys
ENSPMEG00000020547	ptcd1	83	46.179	ENSMEUG00000006930	-	86	45.799	Notamacropus_eugenii
ENSPMEG00000020547	ptcd1	75	57.759	ENSOPRG00000013647	-	73	62.931	Ochotona_princeps
ENSPMEG00000020547	ptcd1	86	67.377	ENSONIG00000003168	ptcd1	100	67.377	Oreochromis_niloticus
ENSPMEG00000020547	ptcd1	82	45.246	ENSOANG00000007728	-	79	45.246	Ornithorhynchus_anatinus
ENSPMEG00000020547	ptcd1	87	46.677	ENSOCUG00000010584	-	82	47.579	Oryctolagus_cuniculus
ENSPMEG00000020547	ptcd1	89	70.128	ENSORLG00000009275	ptcd1	91	70.128	Oryzias_latipes
ENSPMEG00000020547	ptcd1	96	66.765	ENSORLG00020000988	ptcd1	98	66.765	Oryzias_latipes_hni
ENSPMEG00000020547	ptcd1	96	66.224	ENSORLG00015010557	ptcd1	98	66.224	Oryzias_latipes_hsok
ENSPMEG00000020547	ptcd1	96	66.276	ENSOMEG00000020627	ptcd1	96	67.841	Oryzias_melastigma
ENSPMEG00000020547	ptcd1	82	46.477	ENSOGAG00000010877	-	89	45.325	Otolemur_garnettii
ENSPMEG00000020547	ptcd1	89	41.916	ENSOARG00000018676	-	87	43.175	Ovis_aries
ENSPMEG00000020547	ptcd1	85	44.960	ENSPPAG00000036024	-	83	46.566	Pan_paniscus
ENSPMEG00000020547	ptcd1	82	48.997	ENSPPRG00000003478	-	84	48.997	Panthera_pardus
ENSPMEG00000020547	ptcd1	85	45.120	ENSPTRG00000019452	-	83	46.734	Pan_troglodytes
ENSPMEG00000020547	ptcd1	82	48.735	ENSPANG00000016730	-	90	47.022	Papio_anubis
ENSPMEG00000020547	ptcd1	82	50.850	ENSPKIG00000014215	ptcd1	85	51.613	Paramormyrops_kingsleyae
ENSPMEG00000020547	ptcd1	82	45.973	ENSPSIG00000011184	-	98	46.309	Pelodiscus_sinensis
ENSPMEG00000020547	ptcd1	71	41.618	ENSPMAG00000009667	ptcd1	99	41.618	Petromyzon_marinus
ENSPMEG00000020547	ptcd1	86	44.914	ENSPCIG00000024778	-	81	46.318	Phascolarctos_cinereus
ENSPMEG00000020547	ptcd1	100	98.714	ENSPFOG00000004458	ptcd1	100	98.714	Poecilia_formosa
ENSPMEG00000020547	ptcd1	100	97.571	ENSPLAG00000011051	ptcd1	100	97.571	Poecilia_latipinna
ENSPMEG00000020547	ptcd1	100	92.714	ENSPREG00000000059	ptcd1	100	92.429	Poecilia_reticulata
ENSPMEG00000020547	ptcd1	86	45.238	ENSPPYG00000017377	-	89	46.755	Pongo_abelii
ENSPMEG00000020547	ptcd1	72	60.630	ENSPCAG00000001852	-	82	60.630	Procavia_capensis
ENSPMEG00000020547	ptcd1	82	47.386	ENSPCOG00000018596	-	84	47.571	Propithecus_coquereli
ENSPMEG00000020547	ptcd1	53	56.618	ENSPVAG00000007529	-	54	61.538	Pteropus_vampyrus
ENSPMEG00000020547	ptcd1	92	68.950	ENSPNYG00000019993	ptcd1	91	68.950	Pundamilia_nyererei
ENSPMEG00000020547	ptcd1	90	50.700	ENSPNAG00000014931	ptcd1	95	49.104	Pygocentrus_nattereri
ENSPMEG00000020547	ptcd1	85	46.699	ENSRNOG00000000987	Ptcd1	87	47.282	Rattus_norvegicus
ENSPMEG00000020547	ptcd1	91	44.478	ENSRBIG00000043393	-	90	45.540	Rhinopithecus_bieti
ENSPMEG00000020547	ptcd1	91	45.427	ENSRROG00000036420	-	90	46.541	Rhinopithecus_roxellana
ENSPMEG00000020547	ptcd1	82	47.651	ENSSBOG00000024114	-	90	45.853	Saimiri_boliviensis_boliviensis
ENSPMEG00000020547	ptcd1	82	47.455	ENSSHAG00000011376	-	88	48.305	Sarcophilus_harrisii
ENSPMEG00000020547	ptcd1	86	50.877	ENSSFOG00015007909	ptcd1	81	51.809	Scleropages_formosus
ENSPMEG00000020547	ptcd1	89	65.039	ENSSMAG00000000218	ptcd1	99	65.354	Scophthalmus_maximus
ENSPMEG00000020547	ptcd1	89	67.555	ENSSDUG00000015671	ptcd1	88	70.328	Seriola_dumerili
ENSPMEG00000020547	ptcd1	89	67.085	ENSSLDG00000014261	ptcd1	87	70.213	Seriola_lalandi_dorsalis
ENSPMEG00000020547	ptcd1	88	43.713	ENSSPUG00000003540	-	89	43.862	Sphenodon_punctatus
ENSPMEG00000020547	ptcd1	99	65.162	ENSSPAG00000011049	ptcd1	98	64.993	Stegastes_partitus
ENSPMEG00000020547	ptcd1	82	48.403	ENSSSCG00000007622	-	89	48.328	Sus_scrofa
ENSPMEG00000020547	ptcd1	82	46.678	ENSTGUG00000007563	-	95	47.359	Taeniopygia_guttata
ENSPMEG00000020547	ptcd1	90	66.821	ENSTRUG00000013471	ptcd1	92	66.417	Takifugu_rubripes
ENSPMEG00000020547	ptcd1	90	65.635	ENSTNIG00000008271	ptcd1	90	66.987	Tetraodon_nigroviridis
ENSPMEG00000020547	ptcd1	82	48.013	ENSTBEG00000011021	-	84	48.013	Tupaia_belangeri
ENSPMEG00000020547	ptcd1	84	47.106	ENSTTRG00000003006	-	87	47.106	Tursiops_truncatus
ENSPMEG00000020547	ptcd1	82	47.833	ENSUAMG00000008049	-	84	48.167	Ursus_americanus
ENSPMEG00000020547	ptcd1	86	47.319	ENSVVUG00000008836	-	89	47.319	Vulpes_vulpes
ENSPMEG00000020547	ptcd1	84	47.087	ENSXETG00000009891	ptcd1	87	47.087	Xenopus_tropicalis
ENSPMEG00000020547	ptcd1	99	91.559	ENSXMAG00000015540	ptcd1	100	91.559	Xiphophorus_maculatus