EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000021353 (Gene tree)
Gene ID: 106906992
Gene Symbol: lig4
Alias: -
Full Name: DNA ligase 4
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 7411 bases
Position: chrKQ553447.1:39669-47079
Accession: 106906992
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000018414	RNA_ligase	PF09414.10	8.7e-09	1	1
ENSPMEP00000033054	RNA_ligase	PF09414.10	8.7e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000027536	-	4707	-	ENSPMEP00000033054	908 (aa)	-	UPI00072DDE93
ENSPMET00000034187	-	4583	XM_014972488	ENSPMEP00000018414	908 (aa)	XP_014827974	UPI00072DDE93

Gene Model

Click here to download ENSPMEG00000021353's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000021353's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000021353	lig4	99	65.714	ENSG00000174405	LIG4	100	66.351	Homo_sapiens
ENSPMEG00000021353	lig4	100	89.254	ENSAPOG00000000866	lig4	100	88.816	Acanthochromis_polyacanthus
ENSPMEG00000021353	lig4	99	64.442	ENSAMEG00000019685	LIG4	98	64.850	Ailuropoda_melanoleuca
ENSPMEG00000021353	lig4	99	89.462	ENSACIG00000018309	lig4	98	90.045	Amphilophus_citrinellus
ENSPMEG00000021353	lig4	100	88.925	ENSAOCG00000011768	lig4	100	88.487	Amphiprion_ocellaris
ENSPMEG00000021353	lig4	100	89.145	ENSAPEG00000017815	lig4	100	88.706	Amphiprion_percula
ENSPMEG00000021353	lig4	100	88.596	ENSATEG00000005583	lig4	100	88.158	Anabas_testudineus
ENSPMEG00000021353	lig4	96	67.617	ENSAPLG00000001673	LIG4	99	67.503	Anas_platyrhynchos
ENSPMEG00000021353	lig4	99	67.885	ENSACAG00000014566	LIG4	99	68.233	Anolis_carolinensis
ENSPMEG00000021353	lig4	99	65.495	ENSANAG00000012446	LIG4	99	65.628	Aotus_nancymaae
ENSPMEG00000021353	lig4	99	87.925	ENSACLG00000027051	lig4	100	87.500	Astatotilapia_calliptera
ENSPMEG00000021353	lig4	100	80.916	ENSAMXG00000008192	lig4	95	80.916	Astyanax_mexicanus
ENSPMEG00000021353	lig4	99	65.055	ENSBTAG00000015868	LIG4	99	65.184	Bos_taurus
ENSPMEG00000021353	lig4	99	64.945	ENSCJAG00000014689	LIG4	99	65.295	Callithrix_jacchus
ENSPMEG00000021353	lig4	99	64.835	ENSCAFG00000006031	LIG4	99	65.184	Canis_familiaris
ENSPMEG00000021353	lig4	99	64.835	ENSCAFG00020021230	LIG4	99	65.184	Canis_lupus_dingo
ENSPMEG00000021353	lig4	99	64.945	ENSCHIG00000001019	LIG4	99	65.072	Capra_hircus
ENSPMEG00000021353	lig4	98	64.452	ENSCAPG00000006284	LIG4	99	64.294	Cavia_aperea
ENSPMEG00000021353	lig4	99	63.956	ENSCPOG00000014266	LIG4	99	64.182	Cavia_porcellus
ENSPMEG00000021353	lig4	99	65.495	ENSCCAG00000019971	LIG4	99	65.628	Cebus_capucinus
ENSPMEG00000021353	lig4	99	65.934	ENSCATG00000021075	LIG4	99	65.740	Cercocebus_atys
ENSPMEG00000021353	lig4	99	65.165	ENSCLAG00000003376	LIG4	99	65.406	Chinchilla_lanigera
ENSPMEG00000021353	lig4	99	65.604	ENSCSAG00000000211	LIG4	99	65.740	Chlorocebus_sabaeus
ENSPMEG00000021353	lig4	98	69.145	ENSCPBG00000023291	LIG4	98	69.308	Chrysemys_picta_bellii
ENSPMEG00000021353	lig4	70	46.832	ENSCING00000009536	-	96	47.310	Ciona_intestinalis
ENSPMEG00000021353	lig4	83	45.000	ENSCSAVG00000010336	-	98	44.914	Ciona_savignyi
ENSPMEG00000021353	lig4	99	64.945	ENSCANG00000005805	LIG4	99	65.406	Colobus_angolensis_palliatus
ENSPMEG00000021353	lig4	99	64.325	ENSCGRG00001012072	Lig4	99	64.556	Cricetulus_griseus_chok1gshd
ENSPMEG00000021353	lig4	99	64.325	ENSCGRG00000013417	Lig4	99	64.556	Cricetulus_griseus_crigri
ENSPMEG00000021353	lig4	97	85.152	ENSCSEG00000013905	lig4	96	85.152	Cynoglossus_semilaevis
ENSPMEG00000021353	lig4	100	91.895	ENSCVAG00000007896	lig4	100	91.128	Cyprinodon_variegatus
ENSPMEG00000021353	lig4	100	80.263	ENSDARG00000060620	lig4	100	79.715	Danio_rerio
ENSPMEG00000021353	lig4	99	64.874	ENSDNOG00000000513	LIG4	99	65.000	Dasypus_novemcinctus
ENSPMEG00000021353	lig4	99	65.604	ENSDORG00000027303	Lig4	99	65.628	Dipodomys_ordii
ENSPMEG00000021353	lig4	89	30.978	FBgn0030506	Lig4	86	31.475	Drosophila_melanogaster
ENSPMEG00000021353	lig4	98	63.525	ENSETEG00000015563	LIG4	99	63.444	Echinops_telfairi
ENSPMEG00000021353	lig4	99	45.121	ENSEBUG00000014243	lig4	98	44.658	Eptatretus_burgeri
ENSPMEG00000021353	lig4	99	64.945	ENSEASG00005022073	LIG4	99	65.072	Equus_asinus_asinus
ENSPMEG00000021353	lig4	99	64.725	ENSECAG00000003257	LIG4	99	64.850	Equus_caballus
ENSPMEG00000021353	lig4	98	83.333	ENSELUG00000006787	lig4	98	83.389	Esox_lucius
ENSPMEG00000021353	lig4	98	64.895	ENSFCAG00000031985	LIG4	99	64.850	Felis_catus
ENSPMEG00000021353	lig4	88	69.678	ENSFALG00000004214	LIG4	96	70.455	Ficedula_albicollis
ENSPMEG00000021353	lig4	99	63.846	ENSFDAG00000008973	LIG4	99	63.849	Fukomys_damarensis
ENSPMEG00000021353	lig4	100	92.325	ENSFHEG00000007398	lig4	91	91.776	Fundulus_heteroclitus
ENSPMEG00000021353	lig4	86	78.306	ENSGMOG00000012843	lig4	98	78.312	Gadus_morhua
ENSPMEG00000021353	lig4	99	66.009	ENSGALG00000016854	LIG4	98	66.629	Gallus_gallus
ENSPMEG00000021353	lig4	99	98.020	ENSGAFG00000019779	lig4	96	98.020	Gambusia_affinis
ENSPMEG00000021353	lig4	99	84.327	ENSGACG00000014135	lig4	98	84.787	Gasterosteus_aculeatus
ENSPMEG00000021353	lig4	99	65.495	ENSGGOG00000027771	LIG4	99	65.628	Gorilla_gorilla
ENSPMEG00000021353	lig4	99	87.706	ENSHBUG00000006245	lig4	100	87.281	Haplochromis_burtoni
ENSPMEG00000021353	lig4	99	64.396	ENSHGLG00000000718	LIG4	99	64.627	Heterocephalus_glaber_female
ENSPMEG00000021353	lig4	99	64.396	ENSHGLG00100003265	LIG4	99	64.627	Heterocephalus_glaber_male
ENSPMEG00000021353	lig4	100	82.585	ENSHCOG00000012010	lig4	100	82.475	Hippocampus_comes
ENSPMEG00000021353	lig4	100	78.618	ENSIPUG00000013748	lig4	98	79.083	Ictalurus_punctatus
ENSPMEG00000021353	lig4	98	66.002	ENSSTOG00000024303	LIG4	99	65.740	Ictidomys_tridecemlineatus
ENSPMEG00000021353	lig4	99	64.396	ENSJJAG00000006750	Lig4	99	64.739	Jaculus_jaculus
ENSPMEG00000021353	lig4	100	86.952	ENSKMAG00000001149	lig4	100	86.952	Kryptolebias_marmoratus
ENSPMEG00000021353	lig4	91	86.699	ENSLBEG00000014578	lig4	100	86.699	Labrus_bergylta
ENSPMEG00000021353	lig4	98	69.077	ENSLACG00000003282	LIG4	98	69.162	Latimeria_chalumnae
ENSPMEG00000021353	lig4	99	73.149	ENSLOCG00000008901	lig4	97	73.326	Lepisosteus_oculatus
ENSPMEG00000021353	lig4	99	64.474	ENSLAFG00000031152	LIG4	99	64.373	Loxodonta_africana
ENSPMEG00000021353	lig4	99	65.714	ENSMFAG00000037235	LIG4	99	65.851	Macaca_fascicularis
ENSPMEG00000021353	lig4	99	65.495	ENSMMUG00000008874	LIG4	99	65.628	Macaca_mulatta
ENSPMEG00000021353	lig4	99	65.714	ENSMNEG00000023575	LIG4	99	65.851	Macaca_nemestrina
ENSPMEG00000021353	lig4	99	65.495	ENSMLEG00000026720	LIG4	99	65.628	Mandrillus_leucophaeus
ENSPMEG00000021353	lig4	100	88.706	ENSMAMG00000008472	lig4	99	88.268	Mastacembelus_armatus
ENSPMEG00000021353	lig4	99	87.925	ENSMZEG00005001855	lig4	100	87.500	Maylandia_zebra
ENSPMEG00000021353	lig4	98	66.667	ENSMGAG00000015532	LIG4	98	66.741	Meleagris_gallopavo
ENSPMEG00000021353	lig4	99	63.516	ENSMOCG00000019000	Lig4	99	63.849	Microtus_ochrogaster
ENSPMEG00000021353	lig4	100	86.184	ENSMMOG00000004390	lig4	100	86.075	Mola_mola
ENSPMEG00000021353	lig4	99	65.752	ENSMODG00000025064	LIG4	99	66.000	Monodelphis_domestica
ENSPMEG00000021353	lig4	100	88.106	ENSMALG00000008555	lig4	100	87.555	Monopterus_albus
ENSPMEG00000021353	lig4	99	64.396	MGP_CAROLIEiJ_G0030809	Lig4	99	64.627	Mus_caroli
ENSPMEG00000021353	lig4	99	63.956	ENSMUSG00000049717	Lig4	99	64.182	Mus_musculus
ENSPMEG00000021353	lig4	99	64.505	MGP_PahariEiJ_G0021270	Lig4	99	64.739	Mus_pahari
ENSPMEG00000021353	lig4	99	64.286	MGP_SPRETEiJ_G0031917	Lig4	99	64.516	Mus_spretus
ENSPMEG00000021353	lig4	99	65.055	ENSMPUG00000018675	LIG4	99	65.072	Mustela_putorius_furo
ENSPMEG00000021353	lig4	99	65.495	ENSMLUG00000001267	LIG4	99	65.628	Myotis_lucifugus
ENSPMEG00000021353	lig4	99	64.835	ENSNGAG00000013258	Lig4	99	65.072	Nannospalax_galili
ENSPMEG00000021353	lig4	99	87.706	ENSNBRG00000021252	lig4	100	87.281	Neolamprologus_brichardi
ENSPMEG00000021353	lig4	99	65.165	ENSNLEG00000007888	LIG4	99	65.295	Nomascus_leucogenys
ENSPMEG00000021353	lig4	99	63.626	ENSOPRG00000005765	LIG4	99	63.626	Ochotona_princeps
ENSPMEG00000021353	lig4	99	63.886	ENSODEG00000019683	LIG4	99	63.960	Octodon_degus
ENSPMEG00000021353	lig4	99	87.925	ENSONIG00000011969	lig4	99	87.500	Oreochromis_niloticus
ENSPMEG00000021353	lig4	99	64.286	ENSOCUG00000015734	LIG4	99	64.405	Oryctolagus_cuniculus
ENSPMEG00000021353	lig4	100	83.607	ENSORLG00000004041	lig4	98	84.521	Oryzias_latipes
ENSPMEG00000021353	lig4	100	84.044	ENSORLG00020019607	lig4	98	84.967	Oryzias_latipes_hni
ENSPMEG00000021353	lig4	100	83.716	ENSORLG00015017754	lig4	98	84.633	Oryzias_latipes_hsok
ENSPMEG00000021353	lig4	76	89.130	ENSOMEG00000003459	lig4	100	89.130	Oryzias_melastigma
ENSPMEG00000021353	lig4	99	64.989	ENSOGAG00000032120	LIG4	98	65.517	Otolemur_garnettii
ENSPMEG00000021353	lig4	82	68.817	ENSOARG00000005590	LIG4	97	69.441	Ovis_aries
ENSPMEG00000021353	lig4	99	65.495	ENSPPAG00000032998	LIG4	99	65.628	Pan_paniscus
ENSPMEG00000021353	lig4	98	65.449	ENSPPRG00000017804	LIG4	99	65.406	Panthera_pardus
ENSPMEG00000021353	lig4	98	65.338	ENSPTIG00000010051	LIG4	99	65.295	Panthera_tigris_altaica
ENSPMEG00000021353	lig4	99	65.604	ENSPTRG00000006025	LIG4	99	65.740	Pan_troglodytes
ENSPMEG00000021353	lig4	99	66.044	ENSPANG00000007562	LIG4	99	65.851	Papio_anubis
ENSPMEG00000021353	lig4	99	78.808	ENSPKIG00000011645	lig4	97	79.195	Paramormyrops_kingsleyae
ENSPMEG00000021353	lig4	99	68.578	ENSPSIG00000001504	LIG4	98	69.239	Pelodiscus_sinensis
ENSPMEG00000021353	lig4	98	81.626	ENSPMGG00000013486	lig4	100	80.958	Periophthalmus_magnuspinnatus
ENSPMEG00000021353	lig4	98	64.491	ENSPEMG00000000076	Lig4	99	64.222	Peromyscus_maniculatus_bairdii
ENSPMEG00000021353	lig4	99	65.203	ENSPCIG00000021882	LIG4	99	65.667	Phascolarctos_cinereus
ENSPMEG00000021353	lig4	100	99.670	ENSPFOG00000000797	lig4	100	99.670	Poecilia_formosa
ENSPMEG00000021353	lig4	100	99.559	ENSPLAG00000001196	lig4	100	99.559	Poecilia_latipinna
ENSPMEG00000021353	lig4	100	98.568	ENSPREG00000007323	lig4	100	98.568	Poecilia_reticulata
ENSPMEG00000021353	lig4	99	64.945	ENSPPYG00000005540	LIG4	99	65.072	Pongo_abelii
ENSPMEG00000021353	lig4	99	64.725	ENSPVAG00000016403	LIG4	99	64.850	Pteropus_vampyrus
ENSPMEG00000021353	lig4	99	87.925	ENSPNYG00000009660	lig4	100	87.500	Pundamilia_nyererei
ENSPMEG00000021353	lig4	98	82.405	ENSPNAG00000028069	LIG4	99	82.327	Pygocentrus_nattereri
ENSPMEG00000021353	lig4	98	82.405	ENSPNAG00000028056	lig4	99	82.327	Pygocentrus_nattereri
ENSPMEG00000021353	lig4	99	64.066	ENSRNOG00000014605	Lig4	99	64.182	Rattus_norvegicus
ENSPMEG00000021353	lig4	99	64.835	ENSRBIG00000039962	LIG4	99	64.961	Rhinopithecus_bieti
ENSPMEG00000021353	lig4	99	65.385	ENSRROG00000006040	LIG4	99	65.517	Rhinopithecus_roxellana
ENSPMEG00000021353	lig4	99	65.165	ENSSBOG00000019029	LIG4	99	65.295	Saimiri_boliviensis_boliviensis
ENSPMEG00000021353	lig4	99	63.337	ENSSHAG00000009525	LIG4	99	64.111	Sarcophilus_harrisii
ENSPMEG00000021353	lig4	99	79.405	ENSSFOG00015012835	lig4	98	79.978	Scleropages_formosus
ENSPMEG00000021353	lig4	100	83.224	ENSSMAG00000011267	lig4	100	82.675	Scophthalmus_maximus
ENSPMEG00000021353	lig4	100	88.087	ENSSDUG00000010343	lig4	100	87.869	Seriola_dumerili
ENSPMEG00000021353	lig4	100	86.557	ENSSLDG00000003239	lig4	100	86.339	Seriola_lalandi_dorsalis
ENSPMEG00000021353	lig4	99	64.796	ENSSARG00000006573	LIG4	99	64.856	Sorex_araneus
ENSPMEG00000021353	lig4	92	69.405	ENSSPUG00000002444	LIG4	100	69.167	Sphenodon_punctatus
ENSPMEG00000021353	lig4	100	89.583	ENSSPAG00000001609	lig4	100	89.035	Stegastes_partitus
ENSPMEG00000021353	lig4	99	64.796	ENSSSCG00000009540	LIG4	99	65.145	Sus_scrofa
ENSPMEG00000021353	lig4	98	67.444	ENSTGUG00000010795	LIG4	99	67.522	Taeniopygia_guttata
ENSPMEG00000021353	lig4	100	86.952	ENSTRUG00000009984	lig4	100	86.294	Takifugu_rubripes
ENSPMEG00000021353	lig4	100	84.211	ENSTNIG00000010348	lig4	100	84.101	Tetraodon_nigroviridis
ENSPMEG00000021353	lig4	99	65.055	ENSTBEG00000017741	LIG4	99	65.184	Tupaia_belangeri
ENSPMEG00000021353	lig4	99	64.176	ENSTTRG00000012660	LIG4	99	64.294	Tursiops_truncatus
ENSPMEG00000021353	lig4	99	64.615	ENSUAMG00000003773	LIG4	99	64.850	Ursus_americanus
ENSPMEG00000021353	lig4	98	68.374	ENSXETG00000002654	lig4	98	68.374	Xenopus_tropicalis
ENSPMEG00000021353	lig4	100	98.018	ENSXCOG00000017401	lig4	100	98.018	Xiphophorus_couchianus
ENSPMEG00000021353	lig4	100	98.238	ENSXMAG00000015142	lig4	99	98.238	Xiphophorus_maculatus