EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000022350 (Gene tree)
Gene ID: 106917326
Gene Symbol: zgc:171927
Alias: -
Full Name: ras-related protein Rab-1B-like
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 7629 bases
Position: chrKQ550985.1:251919-259547
Accession: 106917326
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000032855	MMR_HSR1	PF01926.23	7e-05	1	1
ENSPMEP00000018119	MMR_HSR1	PF01926.23	7.7e-05	1	1
ENSPMEP00000018347	MMR_HSR1	PF01926.23	8.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000034069	-	549	-	ENSPMEP00000032853	182 (aa)	-	-
ENSPMET00000027144	-	645	XM_014986239	ENSPMEP00000018119	214 (aa)	XP_014841725	UPI000443CDDD
ENSPMET00000034070	-	624	-	ENSPMEP00000032855	207 (aa)	-	-
ENSPMET00000034160	-	567	-	ENSPMEP00000033001	188 (aa)	-	-
ENSPMET00000034166	-	663	-	ENSPMEP00000018347	220 (aa)	-	-
ENSPMET00000027202	-	369	-	ENSPMEP00000018155	122 (aa)	-	-

Gene Model

Click here to download ENSPMEG00000022350's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000022350's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000022350	zgc:171927	54	36.607	ENSPMEG00000018380	rras2	67	36.607
ENSPMEG00000022350	zgc:171927	92	43.216	ENSPMEG00000010152	zgc:101559	85	43.216
ENSPMEG00000022350	zgc:171927	78	40.373	ENSPMEG00000019167	rab6ba	77	40.373
ENSPMEG00000022350	zgc:171927	88	32.124	ENSPMEG00000011210	si:cabz01085950.1	92	32.124
ENSPMEG00000022350	zgc:171927	96	52.261	ENSPMEG00000022988	-	96	52.261
ENSPMEG00000022350	zgc:171927	97	34.112	ENSPMEG00000023735	rab9a	97	34.112
ENSPMEG00000022350	zgc:171927	75	34.177	ENSPMEG00000014302	rheb	85	34.177
ENSPMEG00000022350	zgc:171927	98	40.476	ENSPMEG00000001400	rab25b	96	40.476
ENSPMEG00000022350	zgc:171927	82	50.296	ENSPMEG00000021986	rab15	79	50.296
ENSPMEG00000022350	zgc:171927	99	43.128	ENSPMEG00000012389	rab11bb	96	43.128
ENSPMEG00000022350	zgc:171927	96	34.634	ENSPMEG00000013734	rab9b	89	34.634
ENSPMEG00000022350	zgc:171927	98	75.728	ENSPMEG00000003046	rab1ab	99	77.500
ENSPMEG00000022350	zgc:171927	82	30.769	ENSPMEG00000001179	-	86	30.769
ENSPMEG00000022350	zgc:171927	70	43.709	ENSPMEG00000019646	-	63	43.709
ENSPMEG00000022350	zgc:171927	82	45.562	ENSPMEG00000010857	rab14	79	45.562
ENSPMEG00000022350	zgc:171927	57	32.203	ENSPMEG00000017237	arl8a	64	31.452
ENSPMEG00000022350	zgc:171927	98	74.877	ENSPMEG00000005288	-	100	74.877
ENSPMEG00000022350	zgc:171927	99	43.602	ENSPMEG00000000804	rab11al	96	43.602
ENSPMEG00000022350	zgc:171927	99	43.602	ENSPMEG00000007842	-	96	43.602
ENSPMEG00000022350	zgc:171927	76	38.272	ENSPMEG00000019159	si:dkey-13a21.4	79	38.272
ENSPMEG00000022350	zgc:171927	86	44.134	ENSPMEG00000004946	RAB39B	84	44.134
ENSPMEG00000022350	zgc:171927	78	50.000	ENSPMEG00000008223	rab18b	79	50.000
ENSPMEG00000022350	zgc:171927	94	43.655	ENSPMEG00000007238	rab5aa	89	43.655
ENSPMEG00000022350	zgc:171927	56	35.000	ENSPMEG00000017927	RRAS2	85	35.000
ENSPMEG00000022350	zgc:171927	96	35.681	ENSPMEG00000002086	rab34a	77	35.681
ENSPMEG00000022350	zgc:171927	95	32.828	ENSPMEG00000000572	rras	96	32.828
ENSPMEG00000022350	zgc:171927	98	41.509	ENSPMEG00000005491	rab25a	96	41.509
ENSPMEG00000022350	zgc:171927	82	43.353	ENSPMEG00000017161	-	71	43.353
ENSPMEG00000022350	zgc:171927	95	42.857	ENSPMEG00000007917	rab11ba	72	42.857
ENSPMEG00000022350	zgc:171927	79	38.415	ENSPMEG00000019525	KRAS	91	37.572
ENSPMEG00000022350	zgc:171927	89	41.872	ENSPMEG00000006424	-	95	40.976
ENSPMEG00000022350	zgc:171927	84	46.243	ENSPMEG00000012205	rab4a	81	46.243
ENSPMEG00000022350	zgc:171927	83	46.512	ENSPMEG00000010417	rab12	73	46.111
ENSPMEG00000022350	zgc:171927	92	30.693	ENSPMEG00000000230	rasl11b	81	31.068
ENSPMEG00000022350	zgc:171927	57	30.508	ENSPMEG00000009058	arl8ba	61	30.508
ENSPMEG00000022350	zgc:171927	78	40.373	ENSPMEG00000021872	rab6bb	77	40.373
ENSPMEG00000022350	zgc:171927	76	36.709	ENSPMEG00000017300	rab23	87	34.831
ENSPMEG00000022350	zgc:171927	78	51.852	ENSPMEG00000013085	rab18a	79	51.852
ENSPMEG00000022350	zgc:171927	80	35.714	ENSPMEG00000012042	si:ch73-116o1.2	80	35.714
ENSPMEG00000022350	zgc:171927	79	48.466	ENSPMEG00000000408	RAB15	78	48.466
ENSPMEG00000022350	zgc:171927	78	40.994	ENSPMEG00000014170	rab41	76	40.994
ENSPMEG00000022350	zgc:171927	79	46.012	ENSPMEG00000011336	rab5c	85	44.211
ENSPMEG00000022350	zgc:171927	96	32.093	ENSPMEG00000021807	RAB29	99	32.093
ENSPMEG00000022350	zgc:171927	80	39.645	ENSPMEG00000021641	-	82	39.645
ENSPMEG00000022350	zgc:171927	78	45.122	ENSPMEG00000019497	rab42a	77	44.048
ENSPMEG00000022350	zgc:171927	94	34.359	ENSPMEG00000020891	hrasb	97	34.359
ENSPMEG00000022350	zgc:171927	70	42.000	ENSPMEG00000015292	rab36	84	42.000
ENSPMEG00000022350	zgc:171927	56	35.000	ENSPMEG00000010573	-	85	35.000
ENSPMEG00000022350	zgc:171927	94	36.923	ENSPMEG00000003743	rab22a	97	36.923
ENSPMEG00000022350	zgc:171927	96	34.634	ENSPMEG00000024399	rab9b	89	34.634
ENSPMEG00000022350	zgc:171927	94	38.916	ENSPMEG00000003177	rab33a	58	42.683
ENSPMEG00000022350	zgc:171927	80	39.645	ENSPMEG00000004392	RAB7A	82	39.645
ENSPMEG00000022350	zgc:171927	77	65.000	ENSPMEG00000007165	si:dkey-16l2.16	77	64.198
ENSPMEG00000022350	zgc:171927	86	43.575	ENSPMEG00000007976	-	84	43.575
ENSPMEG00000022350	zgc:171927	100	71.963	ENSPMEG00000002054	rab1ba	100	73.892
ENSPMEG00000022350	zgc:171927	57	32.800	ENSPMEG00000021972	arl4d	61	32.800
ENSPMEG00000022350	zgc:171927	74	33.766	ENSPMEG00000020579	rhebl1	83	33.766
ENSPMEG00000022350	zgc:171927	69	30.201	ENSPMEG00000007064	-	78	30.201
ENSPMEG00000022350	zgc:171927	82	41.040	ENSPMEG00000012932	si:dkey-34d22.5	78	41.040
ENSPMEG00000022350	zgc:171927	96	52.261	ENSPMEG00000008020	-	96	52.261
ENSPMEG00000022350	zgc:171927	99	46.445	ENSPMEG00000009701	rab30	98	47.549
ENSPMEG00000022350	zgc:171927	75	37.736	ENSPMEG00000010190	RAB9A	73	37.736
ENSPMEG00000022350	zgc:171927	80	43.017	ENSPMEG00000022709	rab33ba	74	43.017
ENSPMEG00000022350	zgc:171927	97	46.117	ENSPMEG00000007932	rab11a	96	46.117
ENSPMEG00000022350	zgc:171927	86	31.795	ENSPMEG00000018145	rasl11a	75	31.795
ENSPMEG00000022350	zgc:171927	78	66.049	ENSPMEG00000021947	rab35b	80	66.049
ENSPMEG00000022350	zgc:171927	75	36.478	ENSPMEG00000004703	rabl2	69	36.478
ENSPMEG00000022350	zgc:171927	82	43.529	ENSPMEG00000012614	-	78	43.678
ENSPMEG00000022350	zgc:171927	91	36.946	ENSPMEG00000003369	rab6a	92	36.946
ENSPMEG00000022350	zgc:171927	82	43.353	ENSPMEG00000002564	-	71	43.353
ENSPMEG00000022350	zgc:171927	94	36.275	ENSPMEG00000013297	rab34b	80	36.275

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000022350	zgc:171927	100	93.458	ENSAPOG00000004980	-	100	93.458	Acanthochromis_polyacanthus
ENSPMEG00000022350	zgc:171927	100	92.991	ENSACIG00000009006	zgc:171927	100	92.991	Amphilophus_citrinellus
ENSPMEG00000022350	zgc:171927	73	89.677	ENSAOCG00000013808	-	93	98.347	Amphiprion_ocellaris
ENSPMEG00000022350	zgc:171927	100	91.589	ENSAOCG00000024149	-	100	91.589	Amphiprion_ocellaris
ENSPMEG00000022350	zgc:171927	100	92.056	ENSAPEG00000022171	zgc:171927	99	92.056	Amphiprion_percula
ENSPMEG00000022350	zgc:171927	100	92.991	ENSATEG00000003430	zgc:171927	100	92.991	Anabas_testudineus
ENSPMEG00000022350	zgc:171927	100	92.991	ENSACLG00000013734	-	100	92.991	Astatotilapia_calliptera
ENSPMEG00000022350	zgc:171927	100	78.605	ENSAMXG00000039486	zgc:171927	100	78.605	Astyanax_mexicanus
ENSPMEG00000022350	zgc:171927	100	89.252	ENSCSEG00000014416	zgc:171927	100	89.252	Cynoglossus_semilaevis
ENSPMEG00000022350	zgc:171927	100	93.925	ENSCVAG00000009222	zgc:171927	100	93.925	Cyprinodon_variegatus
ENSPMEG00000022350	zgc:171927	100	78.605	ENSDARG00000033056	zgc:171927	100	78.605	Danio_rerio
ENSPMEG00000022350	zgc:171927	100	79.167	ENSELUG00000011680	zgc:171927	100	79.167	Esox_lucius
ENSPMEG00000022350	zgc:171927	100	93.925	ENSFHEG00000022176	zgc:171927	100	93.925	Fundulus_heteroclitus
ENSPMEG00000022350	zgc:171927	98	77.251	ENSGMOG00000004979	-	98	76.995	Gadus_morhua
ENSPMEG00000022350	zgc:171927	98	96.172	ENSGAFG00000015702	zgc:171927	87	93.981	Gambusia_affinis
ENSPMEG00000022350	zgc:171927	100	89.720	ENSGACG00000013401	zgc:171927	99	89.720	Gasterosteus_aculeatus
ENSPMEG00000022350	zgc:171927	100	92.991	ENSHBUG00000002397	-	100	92.991	Haplochromis_burtoni
ENSPMEG00000022350	zgc:171927	100	92.523	ENSKMAG00000009856	zgc:171927	100	92.523	Kryptolebias_marmoratus
ENSPMEG00000022350	zgc:171927	98	90.431	ENSLBEG00000027226	-	89	90.431	Labrus_bergylta
ENSPMEG00000022350	zgc:171927	100	91.121	ENSLBEG00000005791	-	100	91.121	Labrus_bergylta
ENSPMEG00000022350	zgc:171927	98	71.905	ENSLOCG00000014692	zgc:171927	99	71.163	Lepisosteus_oculatus
ENSPMEG00000022350	zgc:171927	100	90.654	ENSMAMG00000020135	zgc:171927	100	90.654	Mastacembelus_armatus
ENSPMEG00000022350	zgc:171927	100	92.991	ENSMZEG00005024685	-	100	92.991	Maylandia_zebra
ENSPMEG00000022350	zgc:171927	100	88.318	ENSMMOG00000009833	-	100	88.318	Mola_mola
ENSPMEG00000022350	zgc:171927	100	89.252	ENSMALG00000021129	zgc:171927	100	89.252	Monopterus_albus
ENSPMEG00000022350	zgc:171927	100	92.523	ENSNBRG00000006202	zgc:171927	100	92.523	Neolamprologus_brichardi
ENSPMEG00000022350	zgc:171927	100	90.187	ENSORLG00000000602	zgc:171927	100	90.187	Oryzias_latipes
ENSPMEG00000022350	zgc:171927	100	90.187	ENSORLG00020021071	zgc:171927	100	90.187	Oryzias_latipes_hni
ENSPMEG00000022350	zgc:171927	100	90.187	ENSORLG00015010098	zgc:171927	100	90.187	Oryzias_latipes_hsok
ENSPMEG00000022350	zgc:171927	100	91.121	ENSOMEG00000020594	zgc:171927	100	91.121	Oryzias_melastigma
ENSPMEG00000022350	zgc:171927	100	100.000	ENSPFOG00000013810	zgc:171927	99	100.000	Poecilia_formosa
ENSPMEG00000022350	zgc:171927	100	98.131	ENSPLAG00000005869	zgc:171927	100	98.131	Poecilia_latipinna
ENSPMEG00000022350	zgc:171927	100	99.065	ENSPREG00000017517	zgc:171927	100	99.065	Poecilia_reticulata
ENSPMEG00000022350	zgc:171927	100	92.991	ENSPNYG00000007520	-	100	92.991	Pundamilia_nyererei
ENSPMEG00000022350	zgc:171927	100	79.535	ENSPNAG00000029574	zgc:171927	100	79.535	Pygocentrus_nattereri
ENSPMEG00000022350	zgc:171927	100	77.209	ENSSFOG00015005464	zgc:171927	99	77.209	Scleropages_formosus
ENSPMEG00000022350	zgc:171927	100	90.187	ENSSMAG00000004416	-	100	90.187	Scophthalmus_maximus
ENSPMEG00000022350	zgc:171927	100	93.458	ENSSDUG00000004445	zgc:171927	100	93.458	Seriola_dumerili
ENSPMEG00000022350	zgc:171927	100	93.458	ENSSLDG00000018024	zgc:171927	100	93.458	Seriola_lalandi_dorsalis
ENSPMEG00000022350	zgc:171927	100	93.458	ENSSPAG00000013533	zgc:171927	100	93.458	Stegastes_partitus
ENSPMEG00000022350	zgc:171927	100	97.664	ENSXCOG00000010695	zgc:171927	100	97.664	Xiphophorus_couchianus
ENSPMEG00000022350	zgc:171927	100	98.131	ENSXMAG00000004683	zgc:171927	100	98.131	Xiphophorus_maculatus