EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000023532 (Gene tree)
Gene ID: 106915297
Gene Symbol: upf3b
Alias: -
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 8366 bases
Position: chrKQ551138.1:459699-468064
Accession: 106915297
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000020421	Smg4_UPF3	PF03467.15	4.5e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000035044	-	3793	XM_014982788	ENSPMEP00000020421	453 (aa)	XP_014838274	UPI00072EE3FA

Gene Model

Click here to download ENSPMEG00000023532's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000023532's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000023532	upf3b	88	43.627	ENSG00000169062	UPF3A	82	41.832	Homo_sapiens
ENSPMEG00000023532	upf3b	96	56.616	ENSG00000125351	UPF3B	96	66.507	Homo_sapiens
ENSPMEG00000023532	upf3b	100	81.441	ENSAPOG00000012775	upf3b	100	80.786	Acanthochromis_polyacanthus
ENSPMEG00000023532	upf3b	96	57.582	ENSAMEG00000000163	UPF3B	96	56.608	Ailuropoda_melanoleuca
ENSPMEG00000023532	upf3b	93	49.773	ENSAMEG00000004259	UPF3A	90	41.080	Ailuropoda_melanoleuca
ENSPMEG00000023532	upf3b	100	74.138	ENSACIG00000013582	upf3b	100	75.216	Amphilophus_citrinellus
ENSPMEG00000023532	upf3b	100	79.913	ENSAOCG00000000706	upf3b	100	79.258	Amphiprion_ocellaris
ENSPMEG00000023532	upf3b	100	81.223	ENSAPEG00000005545	upf3b	100	80.786	Amphiprion_percula
ENSPMEG00000023532	upf3b	100	79.095	ENSATEG00000018742	upf3b	100	79.741	Anabas_testudineus
ENSPMEG00000023532	upf3b	91	47.796	ENSACAG00000001540	UPF3A	98	42.518	Anolis_carolinensis
ENSPMEG00000023532	upf3b	94	60.722	ENSACAG00000003625	UPF3B	94	59.050	Anolis_carolinensis
ENSPMEG00000023532	upf3b	96	54.148	ENSANAG00000025598	-	92	59.809	Aotus_nancymaae
ENSPMEG00000023532	upf3b	96	57.549	ENSANAG00000021894	-	97	66.507	Aotus_nancymaae
ENSPMEG00000023532	upf3b	100	79.565	ENSACLG00000001649	upf3b	100	78.913	Astatotilapia_calliptera
ENSPMEG00000023532	upf3b	66	79.615	ENSAMXG00000000199	upf3b	91	81.818	Astyanax_mexicanus
ENSPMEG00000023532	upf3b	57	66.545	ENSBTAG00000035615	UPF3B	91	66.507	Bos_taurus
ENSPMEG00000023532	upf3b	96	57.363	ENSCJAG00000004975	UPF3B	97	66.029	Callithrix_jacchus
ENSPMEG00000023532	upf3b	96	55.338	ENSCAFG00000018426	UPF3B	98	54.846	Canis_familiaris
ENSPMEG00000023532	upf3b	96	53.377	ENSCAFG00020004074	UPF3B	96	52.643	Canis_lupus_dingo
ENSPMEG00000023532	upf3b	96	55.745	ENSCHIG00000018011	-	91	66.029	Capra_hircus
ENSPMEG00000023532	upf3b	96	55.957	ENSCHIG00000000247	-	96	54.818	Capra_hircus
ENSPMEG00000023532	upf3b	96	57.330	ENSTSYG00000014690	UPF3B	96	60.465	Carlito_syrichta
ENSPMEG00000023532	upf3b	93	39.002	ENSCCAG00000029813	-	69	53.695	Cebus_capucinus
ENSPMEG00000023532	upf3b	57	49.805	ENSCCAG00000021964	-	86	45.596	Cebus_capucinus
ENSPMEG00000023532	upf3b	96	56.616	ENSCATG00000017506	UPF3B	97	65.072	Cercocebus_atys
ENSPMEG00000023532	upf3b	96	58.242	ENSCLAG00000003260	UPF3B	96	57.489	Chinchilla_lanigera
ENSPMEG00000023532	upf3b	96	55.063	ENSCSAG00000018348	UPF3B	96	54.818	Chlorocebus_sabaeus
ENSPMEG00000023532	upf3b	94	59.184	ENSCPBG00000020685	UPF3B	99	56.438	Chrysemys_picta_bellii
ENSPMEG00000023532	upf3b	57	66.300	ENSCANG00000029220	UPF3B	88	66.507	Colobus_angolensis_palliatus
ENSPMEG00000023532	upf3b	75	54.494	ENSCGRG00001013643	-	92	53.509	Cricetulus_griseus_chok1gshd
ENSPMEG00000023532	upf3b	94	54.967	ENSCGRG00001006858	-	94	53.812	Cricetulus_griseus_chok1gshd
ENSPMEG00000023532	upf3b	86	58.250	ENSCGRG00000007627	Upf3b	93	56.997	Cricetulus_griseus_crigri
ENSPMEG00000023532	upf3b	93	50.340	ENSCSEG00000005106	upf3a	85	44.470	Cynoglossus_semilaevis
ENSPMEG00000023532	upf3b	99	74.895	ENSCSEG00000002046	upf3b	99	75.732	Cynoglossus_semilaevis
ENSPMEG00000023532	upf3b	100	89.912	ENSCVAG00000005030	upf3b	100	89.912	Cyprinodon_variegatus
ENSPMEG00000023532	upf3b	94	71.167	ENSDARG00000000489	upf3b	97	69.147	Danio_rerio
ENSPMEG00000023532	upf3b	88	50.488	ENSDARG00000069297	upf3a	51	56.356	Danio_rerio
ENSPMEG00000023532	upf3b	94	56.114	ENSDNOG00000008665	UPF3B	96	54.390	Dasypus_novemcinctus
ENSPMEG00000023532	upf3b	96	56.923	ENSDORG00000006077	Upf3b	94	55.856	Dipodomys_ordii
ENSPMEG00000023532	upf3b	96	56.044	ENSEASG00005012919	UPF3B	96	50.220	Equus_asinus_asinus
ENSPMEG00000023532	upf3b	96	56.044	ENSECAG00000016947	UPF3B	96	50.220	Equus_caballus
ENSPMEG00000023532	upf3b	89	50.948	ENSELUG00000011050	upf3a	83	45.297	Esox_lucius
ENSPMEG00000023532	upf3b	99	63.843	ENSELUG00000020389	upf3b	100	66.804	Esox_lucius
ENSPMEG00000023532	upf3b	96	48.222	ENSFCAG00000014602	UPF3A	86	41.109	Felis_catus
ENSPMEG00000023532	upf3b	96	55.579	ENSFCAG00000004388	UPF3B	96	56.455	Felis_catus
ENSPMEG00000023532	upf3b	94	49.474	ENSFALG00000001569	UPF3B	94	49.049	Ficedula_albicollis
ENSPMEG00000023532	upf3b	96	58.242	ENSFDAG00000018869	UPF3B	96	57.048	Fukomys_damarensis
ENSPMEG00000023532	upf3b	100	87.826	ENSFHEG00000017895	upf3b	100	85.652	Fundulus_heteroclitus
ENSPMEG00000023532	upf3b	100	65.393	ENSGMOG00000001621	upf3b	100	66.242	Gadus_morhua
ENSPMEG00000023532	upf3b	94	57.965	ENSGALG00000008618	UPF3B	94	58.186	Gallus_gallus
ENSPMEG00000023532	upf3b	100	96.909	ENSGAFG00000000829	upf3b	100	96.909	Gambusia_affinis
ENSPMEG00000023532	upf3b	100	74.298	ENSGACG00000017435	upf3b	94	86.381	Gasterosteus_aculeatus
ENSPMEG00000023532	upf3b	94	63.122	ENSGAGG00000001219	UPF3B	99	59.442	Gopherus_agassizii
ENSPMEG00000023532	upf3b	96	56.616	ENSGGOG00000023995	UPF3B	88	66.507	Gorilla_gorilla
ENSPMEG00000023532	upf3b	100	79.565	ENSHBUG00000017393	upf3b	100	78.913	Haplochromis_burtoni
ENSPMEG00000023532	upf3b	70	57.612	ENSHGLG00000011189	-	80	54.706	Heterocephalus_glaber_female
ENSPMEG00000023532	upf3b	96	57.582	ENSHGLG00000019582	-	96	56.388	Heterocephalus_glaber_female
ENSPMEG00000023532	upf3b	96	55.165	ENSHGLG00100002042	-	96	53.744	Heterocephalus_glaber_male
ENSPMEG00000023532	upf3b	70	57.612	ENSHGLG00100001889	-	81	54.706	Heterocephalus_glaber_male
ENSPMEG00000023532	upf3b	100	70.513	ENSHCOG00000017004	upf3b	100	70.323	Hippocampus_comes
ENSPMEG00000023532	upf3b	100	70.386	ENSIPUG00000019249	upf3b	100	69.528	Ictalurus_punctatus
ENSPMEG00000023532	upf3b	96	57.143	ENSSTOG00000001101	UPF3B	96	56.167	Ictidomys_tridecemlineatus
ENSPMEG00000023532	upf3b	94	57.174	ENSJJAG00000000053	Upf3b	96	54.486	Jaculus_jaculus
ENSPMEG00000023532	upf3b	100	84.026	ENSKMAG00000020300	upf3b	100	82.713	Kryptolebias_marmoratus
ENSPMEG00000023532	upf3b	61	86.957	ENSLBEG00000028689	upf3b	59	86.667	Labrus_bergylta
ENSPMEG00000023532	upf3b	100	59.873	ENSLACG00000008691	UPF3B	100	58.491	Latimeria_chalumnae
ENSPMEG00000023532	upf3b	93	52.425	ENSLOCG00000002665	upf3a	50	59.072	Lepisosteus_oculatus
ENSPMEG00000023532	upf3b	100	63.816	ENSLOCG00000015238	upf3b	100	69.214	Lepisosteus_oculatus
ENSPMEG00000023532	upf3b	96	56.616	ENSLAFG00000001267	UPF3B	96	56.388	Loxodonta_africana
ENSPMEG00000023532	upf3b	96	56.399	ENSMFAG00000045414	UPF3B	97	65.072	Macaca_fascicularis
ENSPMEG00000023532	upf3b	96	56.399	ENSMMUG00000020222	UPF3B	97	65.072	Macaca_mulatta
ENSPMEG00000023532	upf3b	96	56.399	ENSMNEG00000039794	UPF3B	97	65.072	Macaca_nemestrina
ENSPMEG00000023532	upf3b	96	56.616	ENSMLEG00000010999	UPF3B	97	65.072	Mandrillus_leucophaeus
ENSPMEG00000023532	upf3b	100	79.348	ENSMZEG00005007871	upf3b	100	78.696	Maylandia_zebra
ENSPMEG00000023532	upf3b	87	48.293	ENSMGAG00000014837	UPF3A	97	40.750	Meleagris_gallopavo
ENSPMEG00000023532	upf3b	78	59.280	ENSMGAG00000007728	UPF3B	92	59.557	Meleagris_gallopavo
ENSPMEG00000023532	upf3b	94	54.810	ENSMAUG00000008705	Upf3b	94	52.915	Mesocricetus_auratus
ENSPMEG00000023532	upf3b	57	66.909	ENSMICG00000001743	UPF3B	88	66.507	Microcebus_murinus
ENSPMEG00000023532	upf3b	97	52.966	ENSMOCG00000017893	Upf3b	96	52.677	Microtus_ochrogaster
ENSPMEG00000023532	upf3b	100	76.805	ENSMMOG00000004183	upf3b	100	77.243	Mola_mola
ENSPMEG00000023532	upf3b	91	61.190	ENSMODG00000010232	UPF3B	97	57.995	Monodelphis_domestica
ENSPMEG00000023532	upf3b	100	77.897	ENSMALG00000008042	upf3b	100	77.682	Monopterus_albus
ENSPMEG00000023532	upf3b	94	55.507	MGP_CAROLIEiJ_G0032999	Upf3b	94	53.812	Mus_caroli
ENSPMEG00000023532	upf3b	94	55.727	ENSMUSG00000036572	Upf3b	94	54.036	Mus_musculus
ENSPMEG00000023532	upf3b	94	56.167	MGP_PahariEiJ_G0031543	Upf3b	94	54.484	Mus_pahari
ENSPMEG00000023532	upf3b	94	55.727	MGP_SPRETEiJ_G0034152	Upf3b	94	54.036	Mus_spretus
ENSPMEG00000023532	upf3b	96	57.768	ENSMPUG00000001531	UPF3B	98	54.846	Mustela_putorius_furo
ENSPMEG00000023532	upf3b	91	44.262	ENSMLUG00000015905	UPF3A	98	43.119	Myotis_lucifugus
ENSPMEG00000023532	upf3b	96	57.759	ENSMLUG00000010821	UPF3B	96	57.143	Myotis_lucifugus
ENSPMEG00000023532	upf3b	94	53.057	ENSNGAG00000008231	Upf3b	94	54.036	Nannospalax_galili
ENSPMEG00000023532	upf3b	92	58.629	ENSNLEG00000014897	UPF3B	86	58.519	Nomascus_leucogenys
ENSPMEG00000023532	upf3b	96	55.824	ENSODEG00000002186	-	96	55.066	Octodon_degus
ENSPMEG00000023532	upf3b	100	80.215	ENSONIG00000002536	upf3b	100	80.430	Oreochromis_niloticus
ENSPMEG00000023532	upf3b	89	56.563	ENSOANG00000002594	-	97	55.582	Ornithorhynchus_anatinus
ENSPMEG00000023532	upf3b	97	55.085	ENSOCUG00000010213	UPF3B	96	54.604	Oryctolagus_cuniculus
ENSPMEG00000023532	upf3b	100	77.511	ENSORLG00000001026	upf3b	100	76.856	Oryzias_latipes
ENSPMEG00000023532	upf3b	92	49.206	ENSORLG00020014317	upf3a	56	63.469	Oryzias_latipes_hni
ENSPMEG00000023532	upf3b	100	77.074	ENSORLG00020003758	upf3b	100	77.519	Oryzias_latipes_hni
ENSPMEG00000023532	upf3b	100	76.856	ENSORLG00015012954	upf3b	100	76.201	Oryzias_latipes_hsok
ENSPMEG00000023532	upf3b	92	50.229	ENSOMEG00000014425	upf3a	82	47.103	Oryzias_melastigma
ENSPMEG00000023532	upf3b	100	77.074	ENSOMEG00000014736	upf3b	100	76.419	Oryzias_melastigma
ENSPMEG00000023532	upf3b	96	57.363	ENSOGAG00000004643	-	96	56.167	Otolemur_garnettii
ENSPMEG00000023532	upf3b	99	53.797	ENSOGAG00000033003	-	98	54.902	Otolemur_garnettii
ENSPMEG00000023532	upf3b	96	55.603	ENSOARG00000016051	-	96	54.468	Ovis_aries
ENSPMEG00000023532	upf3b	90	46.324	ENSOARG00000007869	-	94	44.039	Ovis_aries
ENSPMEG00000023532	upf3b	88	48.786	ENSPPAG00000042267	UPF3A	82	41.832	Pan_paniscus
ENSPMEG00000023532	upf3b	96	56.616	ENSPPAG00000040390	UPF3B	88	66.507	Pan_paniscus
ENSPMEG00000023532	upf3b	96	48.222	ENSPPRG00000025062	UPF3A	86	41.339	Panthera_pardus
ENSPMEG00000023532	upf3b	96	57.860	ENSPPRG00000023536	UPF3B	96	56.484	Panthera_pardus
ENSPMEG00000023532	upf3b	96	53.236	ENSPTIG00000015264	UPF3B	88	66.029	Panthera_tigris_altaica
ENSPMEG00000023532	upf3b	88	48.786	ENSPTRG00000006073	UPF3A	82	41.832	Pan_troglodytes
ENSPMEG00000023532	upf3b	96	56.616	ENSPTRG00000022228	UPF3B	88	66.507	Pan_troglodytes
ENSPMEG00000023532	upf3b	87	38.287	ENSPTRG00000051640	-	86	35.516	Pan_troglodytes
ENSPMEG00000023532	upf3b	96	56.616	ENSPANG00000000900	UPF3B	97	65.072	Papio_anubis
ENSPMEG00000023532	upf3b	99	67.028	ENSPKIG00000019226	upf3b	93	84.028	Paramormyrops_kingsleyae
ENSPMEG00000023532	upf3b	87	50.000	ENSPSIG00000007468	UPF3A	99	41.981	Pelodiscus_sinensis
ENSPMEG00000023532	upf3b	57	65.152	ENSPSIG00000005833	UPF3B	88	65.737	Pelodiscus_sinensis
ENSPMEG00000023532	upf3b	58	85.932	ENSPMGG00000016067	upf3b	95	85.932	Periophthalmus_magnuspinnatus
ENSPMEG00000023532	upf3b	100	53.958	ENSPEMG00000012352	Upf3b	94	54.362	Peromyscus_maniculatus_bairdii
ENSPMEG00000023532	upf3b	76	54.419	ENSPCIG00000019590	-	63	66.667	Phascolarctos_cinereus
ENSPMEG00000023532	upf3b	93	58.372	ENSPCIG00000028914	UPF3B	87	55.024	Phascolarctos_cinereus
ENSPMEG00000023532	upf3b	100	99.558	ENSPLAG00000005105	upf3b	100	99.558	Poecilia_latipinna
ENSPMEG00000023532	upf3b	91	48.941	ENSPLAG00000011960	upf3a	86	50.361	Poecilia_latipinna
ENSPMEG00000023532	upf3b	100	99.558	ENSPLAG00000019922	upf3b	100	99.558	Poecilia_latipinna
ENSPMEG00000023532	upf3b	62	61.824	ENSPPYG00000020675	-	63	66.507	Pongo_abelii
ENSPMEG00000023532	upf3b	98	54.507	ENSPCAG00000009464	UPF3B	98	53.347	Procavia_capensis
ENSPMEG00000023532	upf3b	96	57.549	ENSPCOG00000021960	UPF3B	84	66.507	Propithecus_coquereli
ENSPMEG00000023532	upf3b	96	47.021	ENSPVAG00000014075	UPF3B	96	45.824	Pteropus_vampyrus
ENSPMEG00000023532	upf3b	100	80.131	ENSPNYG00000009846	upf3b	100	79.913	Pundamilia_nyererei
ENSPMEG00000023532	upf3b	99	71.520	ENSPNAG00000021528	upf3b	94	84.536	Pygocentrus_nattereri
ENSPMEG00000023532	upf3b	94	55.727	ENSRNOG00000039994	Upf3b	94	54.036	Rattus_norvegicus
ENSPMEG00000023532	upf3b	81	56.417	ENSRBIG00000037219	UPF3B	95	56.948	Rhinopithecus_bieti
ENSPMEG00000023532	upf3b	96	56.616	ENSRROG00000041031	UPF3B	97	65.072	Rhinopithecus_roxellana
ENSPMEG00000023532	upf3b	96	57.363	ENSSBOG00000019740	UPF3B	99	65.072	Saimiri_boliviensis_boliviensis
ENSPMEG00000023532	upf3b	98	56.992	ENSSHAG00000008634	UPF3B	98	54.565	Sarcophilus_harrisii
ENSPMEG00000023532	upf3b	99	69.147	ENSSFOG00015005614	upf3b	100	68.996	Scleropages_formosus
ENSPMEG00000023532	upf3b	100	76.660	ENSSMAG00000012913	upf3b	100	90.272	Scophthalmus_maximus
ENSPMEG00000023532	upf3b	100	79.004	ENSSDUG00000005682	upf3b	100	79.004	Seriola_dumerili
ENSPMEG00000023532	upf3b	89	43.596	ENSSDUG00000009680	upf3a	55	76.404	Seriola_dumerili
ENSPMEG00000023532	upf3b	100	80.303	ENSSLDG00000003130	upf3b	100	78.788	Seriola_lalandi_dorsalis
ENSPMEG00000023532	upf3b	86	56.468	ENSSARG00000004147	UPF3B	97	56.132	Sorex_araneus
ENSPMEG00000023532	upf3b	86	37.406	ENSSARG00000007262	UPF3A	92	34.264	Sorex_araneus
ENSPMEG00000023532	upf3b	98	56.639	ENSSPUG00000013082	UPF3B	99	55.602	Sphenodon_punctatus
ENSPMEG00000023532	upf3b	91	48.810	ENSSPAG00000007938	upf3a	72	71.338	Stegastes_partitus
ENSPMEG00000023532	upf3b	99	81.538	ENSSPAG00000009989	upf3b	99	81.538	Stegastes_partitus
ENSPMEG00000023532	upf3b	97	57.267	ENSSSCG00000012617	UPF3B	96	56.388	Sus_scrofa
ENSPMEG00000023532	upf3b	90	60.386	ENSTGUG00000003413	UPF3B	93	61.307	Taeniopygia_guttata
ENSPMEG00000023532	upf3b	87	52.088	ENSTGUG00000009493	UPF3A	98	43.073	Taeniopygia_guttata
ENSPMEG00000023532	upf3b	100	74.891	ENSTRUG00000010645	upf3b	100	72.489	Takifugu_rubripes
ENSPMEG00000023532	upf3b	89	50.121	ENSTRUG00000012730	upf3a	50	63.900	Takifugu_rubripes
ENSPMEG00000023532	upf3b	100	66.377	ENSTNIG00000015763	upf3b	100	62.987	Tetraodon_nigroviridis
ENSPMEG00000023532	upf3b	94	48.140	ENSTBEG00000003229	UPF3B	93	48.132	Tupaia_belangeri
ENSPMEG00000023532	upf3b	96	54.644	ENSUAMG00000024565	UPF3B	96	54.505	Ursus_americanus
ENSPMEG00000023532	upf3b	89	54.479	ENSUMAG00000002150	UPF3B	87	54.926	Ursus_maritimus
ENSPMEG00000023532	upf3b	84	57.360	ENSVPAG00000009971	UPF3B	95	56.234	Vicugna_pacos
ENSPMEG00000023532	upf3b	96	53.159	ENSVVUG00000011594	UPF3B	97	66.507	Vulpes_vulpes
ENSPMEG00000023532	upf3b	94	56.364	ENSXETG00000007440	upf3b	84	76.289	Xenopus_tropicalis
ENSPMEG00000023532	upf3b	100	85.872	ENSXCOG00000016586	upf3b	98	97.449	Xiphophorus_couchianus
ENSPMEG00000023532	upf3b	100	96.026	ENSXMAG00000013680	upf3b	100	96.026	Xiphophorus_maculatus
ENSPMEG00000023532	upf3b	60	70.667	ENSXMAG00000013452	upf3a	85	44.526	Xiphophorus_maculatus