EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000023947 (Gene tree)
Gene ID: 106914654
Gene Symbol: r3hdm1
Alias: -
Full Name: R3H domain-containing protein 1-like
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 48606 bases
Position: chrKQ551110.1:25503-74108
Accession: 106914654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000034607	R3H	PF01424.22	1.3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000030460	-	3636	XM_014981584	ENSPMEP00000034607	949 (aa)	XP_014837070	-

Gene Model

Click here to download ENSPMEG00000023947's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000023947's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000023947	r3hdm1	62	63.296	ENSPMEG00000005330	r3hdm2	73	60.339

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000023947	r3hdm1	91	59.947	ENSG00000048991	R3HDM1	89	60.000	Homo_sapiens
ENSPMEG00000023947	r3hdm1	100	78.128	ENSAPOG00000020850	r3hdm1	96	78.128	Acanthochromis_polyacanthus
ENSPMEG00000023947	r3hdm1	95	49.143	ENSAMEG00000014886	R3HDM1	80	49.734	Ailuropoda_melanoleuca
ENSPMEG00000023947	r3hdm1	100	75.452	ENSAOCG00000005192	r3hdm1	100	75.547	Amphiprion_ocellaris
ENSPMEG00000023947	r3hdm1	100	80.943	ENSAPEG00000016108	r3hdm1	100	80.943	Amphiprion_percula
ENSPMEG00000023947	r3hdm1	100	76.931	ENSATEG00000000232	r3hdm1	100	76.931	Anabas_testudineus
ENSPMEG00000023947	r3hdm1	94	48.922	ENSAPLG00000015231	R3HDM1	78	49.189	Anas_platyrhynchos
ENSPMEG00000023947	r3hdm1	95	47.472	ENSACAG00000001676	R3HDM1	80	48.308	Anolis_carolinensis
ENSPMEG00000023947	r3hdm1	91	60.212	ENSANAG00000035334	R3HDM1	87	60.212	Aotus_nancymaae
ENSPMEG00000023947	r3hdm1	100	78.431	ENSACLG00000027282	r3hdm1	100	78.498	Astatotilapia_calliptera
ENSPMEG00000023947	r3hdm1	86	71.795	ENSAMXG00000003536	r3hdm1	77	73.510	Astyanax_mexicanus
ENSPMEG00000023947	r3hdm1	52	54.673	ENSAMXG00000020587	arpp21	76	53.333	Astyanax_mexicanus
ENSPMEG00000023947	r3hdm1	100	52.792	ENSAMXG00000012861	R3HDM1	89	52.876	Astyanax_mexicanus
ENSPMEG00000023947	r3hdm1	99	47.245	ENSBTAG00000013302	R3HDM1	89	46.945	Bos_taurus
ENSPMEG00000023947	r3hdm1	91	60.212	ENSCJAG00000011718	R3HDM1	87	60.212	Callithrix_jacchus
ENSPMEG00000023947	r3hdm1	95	49.252	ENSCAFG00000005075	R3HDM1	80	49.947	Canis_familiaris
ENSPMEG00000023947	r3hdm1	95	49.252	ENSCAFG00020016119	R3HDM1	79	61.641	Canis_lupus_dingo
ENSPMEG00000023947	r3hdm1	95	49.785	ENSCHIG00000020851	R3HDM1	80	50.214	Capra_hircus
ENSPMEG00000023947	r3hdm1	95	46.304	ENSCPOG00000012784	R3HDM1	91	59.508	Cavia_porcellus
ENSPMEG00000023947	r3hdm1	91	59.626	ENSCCAG00000027199	R3HDM1	87	59.626	Cebus_capucinus
ENSPMEG00000023947	r3hdm1	94	62.619	ENSCATG00000023642	R3HDM1	87	59.947	Cercocebus_atys
ENSPMEG00000023947	r3hdm1	94	47.713	ENSCLAG00000007962	R3HDM1	89	60.802	Chinchilla_lanigera
ENSPMEG00000023947	r3hdm1	95	47.466	ENSCSAG00000016356	R3HDM1	80	47.741	Chlorocebus_sabaeus
ENSPMEG00000023947	r3hdm1	79	66.406	ENSCHOG00000013638	R3HDM1	68	66.406	Choloepus_hoffmanni
ENSPMEG00000023947	r3hdm1	91	50.840	ENSCPBG00000009645	R3HDM1	87	50.950	Chrysemys_picta_bellii
ENSPMEG00000023947	r3hdm1	91	59.947	ENSCANG00000034748	R3HDM1	87	59.947	Colobus_angolensis_palliatus
ENSPMEG00000023947	r3hdm1	99	44.455	ENSCGRG00001012357	R3hdm1	86	44.641	Cricetulus_griseus_chok1gshd
ENSPMEG00000023947	r3hdm1	99	45.577	ENSCGRG00000012080	R3hdm1	100	59.122	Cricetulus_griseus_crigri
ENSPMEG00000023947	r3hdm1	100	64.321	ENSCSEG00000008944	r3hdm1	100	65.332	Cynoglossus_semilaevis
ENSPMEG00000023947	r3hdm1	100	82.530	ENSCVAG00000007582	r3hdm1	100	82.530	Cyprinodon_variegatus
ENSPMEG00000023947	r3hdm1	91	48.824	ENSDNOG00000000771	R3HDM1	76	49.275	Dasypus_novemcinctus
ENSPMEG00000023947	r3hdm1	94	45.137	ENSETEG00000013606	R3HDM1	79	45.730	Echinops_telfairi
ENSPMEG00000023947	r3hdm1	86	65.732	ENSEASG00005007392	R3HDM1	89	47.271	Equus_asinus_asinus
ENSPMEG00000023947	r3hdm1	99	46.915	ENSECAG00000019114	R3HDM1	89	46.125	Equus_caballus
ENSPMEG00000023947	r3hdm1	94	51.187	ENSELUG00000004909	R3HDM1	81	52.762	Esox_lucius
ENSPMEG00000023947	r3hdm1	90	51.390	ENSELUG00000014413	r3hdm1	83	52.667	Esox_lucius
ENSPMEG00000023947	r3hdm1	86	65.732	ENSFCAG00000027113	R3HDM1	88	48.439	Felis_catus
ENSPMEG00000023947	r3hdm1	76	48.912	ENSFALG00000013731	R3HDM1	81	44.028	Ficedula_albicollis
ENSPMEG00000023947	r3hdm1	95	47.342	ENSFDAG00000016478	R3HDM1	89	62.306	Fukomys_damarensis
ENSPMEG00000023947	r3hdm1	100	80.347	ENSFHEG00000018713	r3hdm1	100	80.636	Fundulus_heteroclitus
ENSPMEG00000023947	r3hdm1	65	59.871	ENSGMOG00000006042	-	79	54.955	Gadus_morhua
ENSPMEG00000023947	r3hdm1	80	65.347	ENSGALG00000012246	R3HDM1	84	59.143	Gallus_gallus
ENSPMEG00000023947	r3hdm1	100	92.782	ENSGAFG00000006203	r3hdm1	100	93.305	Gambusia_affinis
ENSPMEG00000023947	r3hdm1	95	72.993	ENSGACG00000014925	r3hdm1	92	73.306	Gasterosteus_aculeatus
ENSPMEG00000023947	r3hdm1	94	49.892	ENSGAGG00000007840	R3HDM1	83	46.988	Gopherus_agassizii
ENSPMEG00000023947	r3hdm1	91	59.947	ENSGGOG00000008156	R3HDM1	87	59.947	Gorilla_gorilla
ENSPMEG00000023947	r3hdm1	53	72.857	ENSHBUG00000015737	R3HDM1	99	73.524	Haplochromis_burtoni
ENSPMEG00000023947	r3hdm1	95	48.045	ENSHGLG00000015718	R3HDM1	89	61.915	Heterocephalus_glaber_female
ENSPMEG00000023947	r3hdm1	95	40.598	ENSHGLG00100015374	-	89	40.709	Heterocephalus_glaber_male
ENSPMEG00000023947	r3hdm1	95	47.840	ENSHGLG00100003184	-	89	61.915	Heterocephalus_glaber_male
ENSPMEG00000023947	r3hdm1	100	65.464	ENSHCOG00000013366	r3hdm1	100	65.464	Hippocampus_comes
ENSPMEG00000023947	r3hdm1	100	51.220	ENSIPUG00000001676	R3HDM1	100	51.972	Ictalurus_punctatus
ENSPMEG00000023947	r3hdm1	91	61.789	ENSIPUG00000013629	r3hdm1	88	60.976	Ictalurus_punctatus
ENSPMEG00000023947	r3hdm1	99	46.325	ENSSTOG00000007572	R3HDM1	100	58.446	Ictidomys_tridecemlineatus
ENSPMEG00000023947	r3hdm1	94	49.428	ENSLACG00000005334	R3HDM1	83	49.324	Latimeria_chalumnae
ENSPMEG00000023947	r3hdm1	94	52.597	ENSLOCG00000001641	r3hdm1	79	53.024	Lepisosteus_oculatus
ENSPMEG00000023947	r3hdm1	95	47.423	ENSLAFG00000009065	R3HDM1	80	47.996	Loxodonta_africana
ENSPMEG00000023947	r3hdm1	86	66.044	ENSMFAG00000030331	R3HDM1	87	59.947	Macaca_fascicularis
ENSPMEG00000023947	r3hdm1	91	59.947	ENSMMUG00000009844	R3HDM1	87	59.947	Macaca_mulatta
ENSPMEG00000023947	r3hdm1	86	66.044	ENSMNEG00000027793	R3HDM1	87	59.947	Macaca_nemestrina
ENSPMEG00000023947	r3hdm1	91	59.947	ENSMLEG00000043189	R3HDM1	87	59.947	Mandrillus_leucophaeus
ENSPMEG00000023947	r3hdm1	100	75.273	ENSMAMG00000004532	r3hdm1	100	75.273	Mastacembelus_armatus
ENSPMEG00000023947	r3hdm1	100	75.622	ENSMZEG00005003157	r3hdm1	100	75.694	Maylandia_zebra
ENSPMEG00000023947	r3hdm1	90	50.284	ENSMGAG00000012461	R3HDM1	78	49.130	Meleagris_gallopavo
ENSPMEG00000023947	r3hdm1	99	44.156	ENSMAUG00000010315	R3hdm1	100	58.784	Mesocricetus_auratus
ENSPMEG00000023947	r3hdm1	91	59.682	ENSMICG00000042655	-	92	59.682	Microcebus_murinus
ENSPMEG00000023947	r3hdm1	91	59.947	ENSMICG00000005900	-	87	59.947	Microcebus_murinus
ENSPMEG00000023947	r3hdm1	94	46.366	ENSMODG00000000923	R3HDM1	85	46.264	Monodelphis_domestica
ENSPMEG00000023947	r3hdm1	100	74.474	ENSMALG00000009000	r3hdm1	90	74.374	Monopterus_albus
ENSPMEG00000023947	r3hdm1	99	44.175	MGP_CAROLIEiJ_G0014543	R3hdm1	100	63.306	Mus_caroli
ENSPMEG00000023947	r3hdm1	99	44.455	ENSMUSG00000056211	R3hdm1	100	63.306	Mus_musculus
ENSPMEG00000023947	r3hdm1	99	44.030	MGP_PahariEiJ_G0027779	R3hdm1	100	63.306	Mus_pahari
ENSPMEG00000023947	r3hdm1	99	44.455	MGP_SPRETEiJ_G0015350	R3hdm1	100	63.306	Mus_spretus
ENSPMEG00000023947	r3hdm1	95	50.322	ENSMPUG00000002412	R3HDM1	80	50.266	Mustela_putorius_furo
ENSPMEG00000023947	r3hdm1	99	46.264	ENSMLUG00000013824	R3HDM1	89	46.552	Myotis_lucifugus
ENSPMEG00000023947	r3hdm1	91	59.626	ENSNLEG00000008622	R3HDM1	87	59.626	Nomascus_leucogenys
ENSPMEG00000023947	r3hdm1	88	45.274	ENSMEUG00000011784	R3HDM1	81	45.108	Notamacropus_eugenii
ENSPMEG00000023947	r3hdm1	94	47.213	ENSODEG00000008607	R3HDM1	89	61.915	Octodon_degus
ENSPMEG00000023947	r3hdm1	94	77.097	ENSONIG00000012017	r3hdm1	85	77.097	Oreochromis_niloticus
ENSPMEG00000023947	r3hdm1	94	48.272	ENSOANG00000007987	R3HDM1	79	49.458	Ornithorhynchus_anatinus
ENSPMEG00000023947	r3hdm1	95	49.411	ENSOCUG00000017366	R3HDM1	88	49.574	Oryctolagus_cuniculus
ENSPMEG00000023947	r3hdm1	100	71.399	ENSORLG00000004297	r3hdm1	100	72.228	Oryzias_latipes
ENSPMEG00000023947	r3hdm1	100	71.946	ENSORLG00015017355	r3hdm1	100	71.198	Oryzias_latipes_hsok
ENSPMEG00000023947	r3hdm1	51	72.233	ENSOMEG00000003882	-	98	72.233	Oryzias_melastigma
ENSPMEG00000023947	r3hdm1	94	49.619	ENSOGAG00000003136	R3HDM1	79	49.892	Otolemur_garnettii
ENSPMEG00000023947	r3hdm1	95	50.054	ENSOARG00000010788	R3HDM1	80	50.215	Ovis_aries
ENSPMEG00000023947	r3hdm1	91	59.947	ENSPPAG00000027858	R3HDM1	87	59.947	Pan_paniscus
ENSPMEG00000023947	r3hdm1	91	59.682	ENSPPRG00000002626	R3HDM1	87	59.682	Panthera_pardus
ENSPMEG00000023947	r3hdm1	91	59.682	ENSPTIG00000016581	R3HDM1	87	59.682	Panthera_tigris_altaica
ENSPMEG00000023947	r3hdm1	91	59.947	ENSPTRG00000012494	R3HDM1	87	59.947	Pan_troglodytes
ENSPMEG00000023947	r3hdm1	91	59.947	ENSPANG00000026448	R3HDM1	87	59.947	Papio_anubis
ENSPMEG00000023947	r3hdm1	90	70.552	ENSPKIG00000004328	r3hdm1	80	69.632	Paramormyrops_kingsleyae
ENSPMEG00000023947	r3hdm1	94	49.030	ENSPSIG00000012915	R3HDM1	78	48.984	Pelodiscus_sinensis
ENSPMEG00000023947	r3hdm1	94	47.083	ENSPEMG00000015187	R3hdm1	100	58.446	Peromyscus_maniculatus_bairdii
ENSPMEG00000023947	r3hdm1	84	67.532	ENSPCIG00000002491	R3HDM1	88	46.237	Phascolarctos_cinereus
ENSPMEG00000023947	r3hdm1	100	91.440	ENSPFOG00000015036	r3hdm1	100	91.440	Poecilia_formosa
ENSPMEG00000023947	r3hdm1	100	98.633	ENSPLAG00000018042	r3hdm1	100	98.633	Poecilia_latipinna
ENSPMEG00000023947	r3hdm1	100	94.665	ENSPREG00000007902	r3hdm1	100	94.665	Poecilia_reticulata
ENSPMEG00000023947	r3hdm1	95	48.180	ENSPPYG00000012815	R3HDM1	80	48.247	Pongo_abelii
ENSPMEG00000023947	r3hdm1	93	54.142	ENSPCAG00000006208	R3HDM1	73	69.604	Procavia_capensis
ENSPMEG00000023947	r3hdm1	81	69.565	ENSPCOG00000012698	R3HDM1	79	69.565	Propithecus_coquereli
ENSPMEG00000023947	r3hdm1	95	43.408	ENSPVAG00000006098	R3HDM1	79	43.366	Pteropus_vampyrus
ENSPMEG00000023947	r3hdm1	85	70.530	ENSPNAG00000005436	R3HDM1	87	69.536	Pygocentrus_nattereri
ENSPMEG00000023947	r3hdm1	82	73.179	ENSPNAG00000013952	r3hdm1	77	73.179	Pygocentrus_nattereri
ENSPMEG00000023947	r3hdm1	99	44.268	ENSRNOG00000004099	R3hdm1	89	44.362	Rattus_norvegicus
ENSPMEG00000023947	r3hdm1	81	69.675	ENSRBIG00000033317	R3HDM1	86	69.675	Rhinopithecus_bieti
ENSPMEG00000023947	r3hdm1	91	59.947	ENSRROG00000034534	R3HDM1	87	59.947	Rhinopithecus_roxellana
ENSPMEG00000023947	r3hdm1	91	60.477	ENSSBOG00000020389	R3HDM1	87	60.477	Saimiri_boliviensis_boliviensis
ENSPMEG00000023947	r3hdm1	99	47.720	ENSSHAG00000016999	R3HDM1	88	47.619	Sarcophilus_harrisii
ENSPMEG00000023947	r3hdm1	84	74.000	ENSSFOG00015014134	r3hdm1	78	73.000	Scleropages_formosus
ENSPMEG00000023947	r3hdm1	100	47.582	ENSSFOG00015019851	-	95	47.363	Scleropages_formosus
ENSPMEG00000023947	r3hdm1	100	74.089	ENSSMAG00000001669	r3hdm1	90	74.190	Scophthalmus_maximus
ENSPMEG00000023947	r3hdm1	100	78.310	ENSSDUG00000010749	r3hdm1	100	78.557	Seriola_dumerili
ENSPMEG00000023947	r3hdm1	100	76.214	ENSSLDG00000004499	r3hdm1	90	76.459	Seriola_lalandi_dorsalis
ENSPMEG00000023947	r3hdm1	99	45.349	ENSSPUG00000004167	R3HDM1	88	46.161	Sphenodon_punctatus
ENSPMEG00000023947	r3hdm1	100	80.061	ENSSPAG00000004648	r3hdm1	100	80.163	Stegastes_partitus
ENSPMEG00000023947	r3hdm1	91	56.952	ENSSSCG00000015692	R3HDM1	87	56.952	Sus_scrofa
ENSPMEG00000023947	r3hdm1	90	49.377	ENSTGUG00000011750	R3HDM1	79	48.860	Taeniopygia_guttata
ENSPMEG00000023947	r3hdm1	100	70.951	ENSTRUG00000011654	r3hdm1	99	70.951	Takifugu_rubripes
ENSPMEG00000023947	r3hdm1	98	65.927	ENSTNIG00000010362	r3hdm1	99	66.129	Tetraodon_nigroviridis
ENSPMEG00000023947	r3hdm1	94	48.087	ENSTTRG00000003935	R3HDM1	79	48.693	Tursiops_truncatus
ENSPMEG00000023947	r3hdm1	79	50.960	ENSUAMG00000024806	R3HDM1	93	55.504	Ursus_americanus
ENSPMEG00000023947	r3hdm1	91	59.682	ENSUMAG00000005552	R3HDM1	87	59.682	Ursus_maritimus
ENSPMEG00000023947	r3hdm1	87	49.593	ENSVPAG00000007333	R3HDM1	74	49.825	Vicugna_pacos
ENSPMEG00000023947	r3hdm1	91	59.682	ENSVVUG00000006457	R3HDM1	88	48.597	Vulpes_vulpes
ENSPMEG00000023947	r3hdm1	95	46.253	ENSXETG00000019330	r3hdm1	89	46.989	Xenopus_tropicalis
ENSPMEG00000023947	r3hdm1	78	87.114	ENSXCOG00000017448	r3hdm1	93	88.591	Xiphophorus_couchianus
ENSPMEG00000023947	r3hdm1	100	93.089	ENSXMAG00000007885	r3hdm1	97	94.031	Xiphophorus_maculatus