EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMGG00000000844 (Gene tree)
Gene ID: -
Gene Symbol: smg6
Alias: -
Full Name: SMG6 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Periophthalmus_magnuspinnatus
Status: putative
Strand: Plus strand
Length: 8799 bases
Position: chrKN462446.1:417249-426047
Accession: ZDB-GENE-081107-52
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMGP00000000931	EST1	PF10374.9	2.5e-13	1	1
ENSPMGP00000000928	EST1_DNA_bind	PF10373.9	3.4e-58	1	1
ENSPMGP00000000931	EST1_DNA_bind	PF10373.9	3.9e-57	1	1
ENSPMGP00000000928	PIN_4	PF13638.6	1.5e-20	1	1
ENSPMGP00000000931	PIN_4	PF13638.6	1.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMGT00000000983	-	4200	-	ENSPMGP00000000931	1399 (aa)	-	-
ENSPMGT00000000980	-	4206	-	ENSPMGP00000000928	1401 (aa)	-	-

Gene Model

Click here to download ENSPMGG00000000844's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMGG00000000844's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMGG00000000844	smg6	100	60.742	ENSG00000070366	SMG6	100	59.626	Homo_sapiens
ENSPMGG00000000844	smg6	100	68.620	ENSAPOG00000019448	smg6	95	81.335	Acanthochromis_polyacanthus
ENSPMGG00000000844	smg6	100	60.614	ENSAMEG00000007632	SMG6	98	60.614	Ailuropoda_melanoleuca
ENSPMGG00000000844	smg6	92	80.252	ENSACIG00000012997	smg6	93	80.252	Amphilophus_citrinellus
ENSPMGG00000000844	smg6	99	80.381	ENSAOCG00000002630	smg6	96	80.000	Amphiprion_ocellaris
ENSPMGG00000000844	smg6	99	80.109	ENSAPEG00000019101	smg6	95	81.063	Amphiprion_percula
ENSPMGG00000000844	smg6	99	79.728	ENSATEG00000006483	smg6	95	80.272	Anabas_testudineus
ENSPMGG00000000844	smg6	86	45.518	ENSACAG00000011783	SMG6	93	53.782	Anolis_carolinensis
ENSPMGG00000000844	smg6	100	60.614	ENSANAG00000035760	SMG6	100	49.967	Aotus_nancymaae
ENSPMGG00000000844	smg6	99	79.452	ENSACLG00000005288	smg6	95	79.589	Astatotilapia_calliptera
ENSPMGG00000000844	smg6	74	73.773	ENSAMXG00000017326	smg6	72	68.360	Astyanax_mexicanus
ENSPMGG00000000844	smg6	100	60.614	ENSBTAG00000000267	SMG6	100	50.033	Bos_taurus
ENSPMGG00000000844	smg6	100	60.742	ENSCJAG00000001820	SMG6	98	60.742	Callithrix_jacchus
ENSPMGG00000000844	smg6	100	60.870	ENSCAFG00000019260	SMG6	98	60.870	Canis_familiaris
ENSPMGG00000000844	smg6	100	60.870	ENSCAFG00020009770	SMG6	98	60.870	Canis_lupus_dingo
ENSPMGG00000000844	smg6	100	60.742	ENSCHIG00000021998	SMG6	100	50.033	Capra_hircus
ENSPMGG00000000844	smg6	100	60.614	ENSTSYG00000003406	SMG6	100	59.439	Carlito_syrichta
ENSPMGG00000000844	smg6	88	59.031	ENSCAPG00000016197	SMG6	99	52.995	Cavia_aperea
ENSPMGG00000000844	smg6	100	60.591	ENSCPOG00000014878	SMG6	98	60.591	Cavia_porcellus
ENSPMGG00000000844	smg6	100	60.870	ENSCCAG00000035801	SMG6	100	49.735	Cebus_capucinus
ENSPMGG00000000844	smg6	100	60.614	ENSCATG00000031956	SMG6	98	60.025	Cercocebus_atys
ENSPMGG00000000844	smg6	100	60.719	ENSCLAG00000006748	SMG6	98	60.719	Chinchilla_lanigera
ENSPMGG00000000844	smg6	100	60.870	ENSCSAG00000013800	SMG6	100	49.901	Chlorocebus_sabaeus
ENSPMGG00000000844	smg6	100	59.512	ENSCPBG00000020369	SMG6	93	59.512	Chrysemys_picta_bellii
ENSPMGG00000000844	smg6	89	60.870	ENSCANG00000031764	SMG6	100	60.000	Colobus_angolensis_palliatus
ENSPMGG00000000844	smg6	54	41.935	ENSCGRG00001019595	Smg6	97	41.726	Cricetulus_griseus_chok1gshd
ENSPMGG00000000844	smg6	98	45.970	ENSCGRG00000007782	Smg6	97	53.273	Cricetulus_griseus_crigri
ENSPMGG00000000844	smg6	99	76.294	ENSCSEG00000012757	smg6	94	78.445	Cynoglossus_semilaevis
ENSPMGG00000000844	smg6	100	75.798	ENSCVAG00000012789	smg6	95	76.228	Cyprinodon_variegatus
ENSPMGG00000000844	smg6	100	72.678	ENSDARG00000100481	smg6	95	72.642	Danio_rerio
ENSPMGG00000000844	smg6	100	60.764	ENSDNOG00000048283	SMG6	98	60.764	Dasypus_novemcinctus
ENSPMGG00000000844	smg6	98	58.790	ENSDORG00000016614	Smg6	92	58.790	Dipodomys_ordii
ENSPMGG00000000844	smg6	92	90.000	ENSETEG00000016790	SMG6	93	90.000	Echinops_telfairi
ENSPMGG00000000844	smg6	68	54.545	ENSEBUG00000005059	smg6	71	45.122	Eptatretus_burgeri
ENSPMGG00000000844	smg6	99	60.897	ENSEASG00005009318	SMG6	97	60.897	Equus_asinus_asinus
ENSPMGG00000000844	smg6	99	60.769	ENSECAG00000006519	SMG6	97	60.769	Equus_caballus
ENSPMGG00000000844	smg6	96	55.090	ENSEEUG00000003493	SMG6	100	44.003	Erinaceus_europaeus
ENSPMGG00000000844	smg6	80	72.275	ENSELUG00000005934	smg6	68	73.217	Esox_lucius
ENSPMGG00000000844	smg6	100	60.870	ENSFCAG00000028817	SMG6	98	60.870	Felis_catus
ENSPMGG00000000844	smg6	89	62.092	ENSFALG00000006538	SMG6	94	61.200	Ficedula_albicollis
ENSPMGG00000000844	smg6	100	60.719	ENSFDAG00000015106	SMG6	98	60.719	Fukomys_damarensis
ENSPMGG00000000844	smg6	99	76.567	ENSFHEG00000013282	smg6	95	76.431	Fundulus_heteroclitus
ENSPMGG00000000844	smg6	53	75.238	ENSGMOG00000019077	smg6	51	90.323	Gadus_morhua
ENSPMGG00000000844	smg6	100	61.119	ENSGALG00000003108	SMG6	98	48.141	Gallus_gallus
ENSPMGG00000000844	smg6	99	77.748	ENSGAFG00000000379	smg6	94	78.019	Gambusia_affinis
ENSPMGG00000000844	smg6	89	77.490	ENSGACG00000020521	smg6	93	77.490	Gasterosteus_aculeatus
ENSPMGG00000000844	smg6	98	58.809	ENSGAGG00000025617	SMG6	98	58.809	Gopherus_agassizii
ENSPMGG00000000844	smg6	100	60.870	ENSGGOG00000017156	SMG6	96	60.279	Gorilla_gorilla
ENSPMGG00000000844	smg6	99	79.452	ENSHBUG00000021311	smg6	95	79.589	Haplochromis_burtoni
ENSPMGG00000000844	smg6	100	62.584	ENSHGLG00000012882	SMG6	95	62.267	Heterocephalus_glaber_female
ENSPMGG00000000844	smg6	100	62.584	ENSHGLG00100017815	SMG6	95	62.267	Heterocephalus_glaber_male
ENSPMGG00000000844	smg6	74	67.891	ENSHCOG00000008761	smg6	83	68.426	Hippocampus_comes
ENSPMGG00000000844	smg6	95	70.000	ENSIPUG00000012493	smg6	87	70.000	Ictalurus_punctatus
ENSPMGG00000000844	smg6	100	60.870	ENSSTOG00000028127	SMG6	98	60.870	Ictidomys_tridecemlineatus
ENSPMGG00000000844	smg6	78	59.275	ENSJJAG00000015367	Smg6	93	56.548	Jaculus_jaculus
ENSPMGG00000000844	smg6	99	78.659	ENSKMAG00000000279	smg6	94	78.659	Kryptolebias_marmoratus
ENSPMGG00000000844	smg6	99	79.484	ENSLBEG00000002184	smg6	94	80.163	Labrus_bergylta
ENSPMGG00000000844	smg6	74	65.498	ENSLOCG00000006448	smg6	93	68.493	Lepisosteus_oculatus
ENSPMGG00000000844	smg6	100	60.462	ENSLAFG00000001261	SMG6	100	48.748	Loxodonta_africana
ENSPMGG00000000844	smg6	100	60.870	ENSMFAG00000003394	SMG6	98	60.279	Macaca_fascicularis
ENSPMGG00000000844	smg6	100	60.742	ENSMMUG00000023161	SMG6	98	60.152	Macaca_mulatta
ENSPMGG00000000844	smg6	100	57.143	ENSMNEG00000044592	SMG6	100	48.146	Macaca_nemestrina
ENSPMGG00000000844	smg6	92	70.130	ENSMLEG00000029353	SMG6	97	70.130	Mandrillus_leucophaeus
ENSPMGG00000000844	smg6	99	79.837	ENSMAMG00000020119	smg6	95	80.381	Mastacembelus_armatus
ENSPMGG00000000844	smg6	99	79.452	ENSMZEG00005024736	smg6	95	79.589	Maylandia_zebra
ENSPMGG00000000844	smg6	71	45.347	ENSMGAG00000005401	-	96	44.689	Meleagris_gallopavo
ENSPMGG00000000844	smg6	100	60.948	ENSMICG00000012913	SMG6	98	60.948	Microcebus_murinus
ENSPMGG00000000844	smg6	99	78.852	ENSMMOG00000010883	smg6	94	79.552	Mola_mola
ENSPMGG00000000844	smg6	100	60.691	ENSMODG00000010622	SMG6	100	49.599	Monodelphis_domestica
ENSPMGG00000000844	smg6	100	77.793	ENSMALG00000001106	smg6	96	78.856	Monopterus_albus
ENSPMGG00000000844	smg6	89	59.873	MGP_CAROLIEiJ_G0016729	Smg6	97	62.264	Mus_caroli
ENSPMGG00000000844	smg6	89	60.000	ENSMUSG00000038290	Smg6	91	67.868	Mus_musculus
ENSPMGG00000000844	smg6	100	59.949	MGP_PahariEiJ_G0017866	Smg6	91	68.072	Mus_pahari
ENSPMGG00000000844	smg6	100	49.049	MGP_SPRETEiJ_G0017572	Smg6	91	67.568	Mus_spretus
ENSPMGG00000000844	smg6	100	60.870	ENSMPUG00000013046	SMG6	100	50.066	Mustela_putorius_furo
ENSPMGG00000000844	smg6	100	50.199	ENSMLUG00000005739	SMG6	100	50.100	Myotis_lucifugus
ENSPMGG00000000844	smg6	98	49.324	ENSNGAG00000007287	Smg6	97	60.230	Nannospalax_galili
ENSPMGG00000000844	smg6	97	80.365	ENSNBRG00000009511	smg6	94	80.365	Neolamprologus_brichardi
ENSPMGG00000000844	smg6	89	60.870	ENSNLEG00000017171	SMG6	100	59.626	Nomascus_leucogenys
ENSPMGG00000000844	smg6	89	60.925	ENSMEUG00000015804	SMG6	88	53.246	Notamacropus_eugenii
ENSPMGG00000000844	smg6	57	60.106	ENSOPRG00000000579	SMG6	81	55.607	Ochotona_princeps
ENSPMGG00000000844	smg6	100	44.269	ENSODEG00000008038	SMG6	100	44.562	Octodon_degus
ENSPMGG00000000844	smg6	99	80.137	ENSONIG00000005594	smg6	96	78.820	Oreochromis_niloticus
ENSPMGG00000000844	smg6	100	60.536	ENSOCUG00000013018	SMG6	98	60.536	Oryctolagus_cuniculus
ENSPMGG00000000844	smg6	99	73.854	ENSORLG00000003317	smg6	94	75.848	Oryzias_latipes
ENSPMGG00000000844	smg6	99	74.830	ENSORLG00020015343	smg6	94	75.238	Oryzias_latipes_hni
ENSPMGG00000000844	smg6	99	73.585	ENSORLG00015020454	smg6	94	75.712	Oryzias_latipes_hsok
ENSPMGG00000000844	smg6	99	75.577	ENSOMEG00000010838	smg6	94	77.100	Oryzias_melastigma
ENSPMGG00000000844	smg6	100	60.870	ENSOGAG00000004483	SMG6	98	60.870	Otolemur_garnettii
ENSPMGG00000000844	smg6	99	60.742	ENSOARG00000015076	SMG6	99	49.966	Ovis_aries
ENSPMGG00000000844	smg6	100	60.870	ENSPPAG00000043296	SMG6	100	49.768	Pan_paniscus
ENSPMGG00000000844	smg6	100	60.870	ENSPPRG00000014581	SMG6	98	60.870	Panthera_pardus
ENSPMGG00000000844	smg6	98	60.870	ENSPTIG00000008925	SMG6	100	59.439	Panthera_tigris_altaica
ENSPMGG00000000844	smg6	100	60.870	ENSPTRG00000008544	SMG6	100	59.626	Pan_troglodytes
ENSPMGG00000000844	smg6	100	60.742	ENSPANG00000024588	SMG6	98	60.152	Papio_anubis
ENSPMGG00000000844	smg6	89	57.960	ENSPSIG00000006660	SMG6	96	47.345	Pelodiscus_sinensis
ENSPMGG00000000844	smg6	100	60.102	ENSPEMG00000020707	Smg6	98	60.102	Peromyscus_maniculatus_bairdii
ENSPMGG00000000844	smg6	99	77.582	ENSPFOG00000012035	smg6	94	78.261	Poecilia_formosa
ENSPMGG00000000844	smg6	99	77.717	ENSPLAG00000017660	smg6	94	77.989	Poecilia_latipinna
ENSPMGG00000000844	smg6	99	77.853	ENSPMEG00000000258	smg6	94	78.261	Poecilia_mexicana
ENSPMGG00000000844	smg6	99	77.717	ENSPREG00000010066	smg6	94	78.261	Poecilia_reticulata
ENSPMGG00000000844	smg6	100	53.934	ENSPPYG00000007790	SMG6	100	46.715	Pongo_abelii
ENSPMGG00000000844	smg6	96	61.215	ENSPCAG00000000552	SMG6	98	57.069	Procavia_capensis
ENSPMGG00000000844	smg6	100	60.742	ENSPCOG00000020925	SMG6	98	60.742	Propithecus_coquereli
ENSPMGG00000000844	smg6	75	62.853	ENSPVAG00000002159	SMG6	83	51.592	Pteropus_vampyrus
ENSPMGG00000000844	smg6	92	77.949	ENSPNYG00000024151	smg6	94	77.949	Pundamilia_nyererei
ENSPMGG00000000844	smg6	97	69.253	ENSPNAG00000015480	smg6	93	69.253	Pygocentrus_nattereri
ENSPMGG00000000844	smg6	100	60.102	ENSRNOG00000003041	Smg6	97	63.043	Rattus_norvegicus
ENSPMGG00000000844	smg6	100	60.870	ENSRBIG00000024746	SMG6	98	60.279	Rhinopithecus_bieti
ENSPMGG00000000844	smg6	100	60.870	ENSRROG00000030423	SMG6	100	60.000	Rhinopithecus_roxellana
ENSPMGG00000000844	smg6	100	60.614	ENSSBOG00000022518	SMG6	100	48.114	Saimiri_boliviensis_boliviensis
ENSPMGG00000000844	smg6	98	63.271	ENSSHAG00000010045	SMG6	97	49.966	Sarcophilus_harrisii
ENSPMGG00000000844	smg6	98	54.622	ENSSFOG00015005436	smg6	77	59.031	Scleropages_formosus
ENSPMGG00000000844	smg6	100	79.891	ENSSMAG00000019777	smg6	95	80.299	Scophthalmus_maximus
ENSPMGG00000000844	smg6	99	81.140	ENSSDUG00000016412	smg6	94	82.090	Seriola_dumerili
ENSPMGG00000000844	smg6	89	79.568	ENSSLDG00000020747	smg6	92	80.576	Seriola_lalandi_dorsalis
ENSPMGG00000000844	smg6	99	58.854	ENSSPUG00000007152	SMG6	99	48.723	Sphenodon_punctatus
ENSPMGG00000000844	smg6	99	80.790	ENSSPAG00000015633	smg6	95	81.608	Stegastes_partitus
ENSPMGG00000000844	smg6	100	60.997	ENSSSCG00000017826	SMG6	98	60.997	Sus_scrofa
ENSPMGG00000000844	smg6	100	49.037	ENSTGUG00000005836	SMG6	92	61.333	Taeniopygia_guttata
ENSPMGG00000000844	smg6	91	79.248	ENSTRUG00000000358	smg6	92	79.494	Takifugu_rubripes
ENSPMGG00000000844	smg6	100	65.802	ENSTNIG00000016164	smg6	100	66.076	Tetraodon_nigroviridis
ENSPMGG00000000844	smg6	100	56.577	ENSTBEG00000011424	SMG6	96	60.448	Tupaia_belangeri
ENSPMGG00000000844	smg6	97	57.518	ENSTTRG00000001175	SMG6	91	57.518	Tursiops_truncatus
ENSPMGG00000000844	smg6	100	60.127	ENSUAMG00000025152	SMG6	100	49.474	Ursus_americanus
ENSPMGG00000000844	smg6	98	60.614	ENSUMAG00000009306	SMG6	99	50.101	Ursus_maritimus
ENSPMGG00000000844	smg6	84	91.667	ENSVPAG00000000225	SMG6	87	91.667	Vicugna_pacos
ENSPMGG00000000844	smg6	100	60.870	ENSVVUG00000021727	SMG6	98	60.870	Vulpes_vulpes
ENSPMGG00000000844	smg6	77	53.626	ENSXETG00000023799	SMG6	86	50.877	Xenopus_tropicalis
ENSPMGG00000000844	smg6	97	78.541	ENSXCOG00000009867	smg6	93	78.541	Xiphophorus_couchianus
ENSPMGG00000000844	smg6	99	77.989	ENSXMAG00000010321	smg6	94	78.261	Xiphophorus_maculatus