EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMGG00000002648 (Gene tree)
Gene ID: -
Gene Symbol: xrn1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Periophthalmus_magnuspinnatus
Status: putative
Strand: Minus strand
Length: 6628 bases
Position: chrKN466519.1:132039-138666
Accession: ZDB-GENE-040426-1203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMGP00000003036	XRN_N	PF03159.18	2.4e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMGT00000003221	-	2898	-	ENSPMGP00000003036	965 (aa)	-	-

Gene Model

Click here to download ENSPMGG00000002648's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMGG00000002648's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMGG00000002648	xrn1	98	78.650	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSPMGG00000002648	xrn1	99	87.261	ENSAPOG00000000622	xrn1	94	82.803	Acanthochromis_polyacanthus
ENSPMGG00000002648	xrn1	98	77.865	ENSAMEG00000012538	XRN1	56	77.394	Ailuropoda_melanoleuca
ENSPMGG00000002648	xrn1	99	86.446	ENSACIG00000001057	xrn1	60	87.122	Amphilophus_citrinellus
ENSPMGG00000002648	xrn1	99	87.859	ENSAOCG00000014097	xrn1	95	75.560	Amphiprion_ocellaris
ENSPMGG00000002648	xrn1	99	87.859	ENSAPEG00000006620	xrn1	62	87.859	Amphiprion_percula
ENSPMGG00000002648	xrn1	99	84.036	ENSATEG00000009752	xrn1	61	83.728	Anabas_testudineus
ENSPMGG00000002648	xrn1	95	78.571	ENSAPLG00000004905	XRN1	55	75.493	Anas_platyrhynchos
ENSPMGG00000002648	xrn1	98	78.527	ENSACAG00000004985	XRN1	54	76.332	Anolis_carolinensis
ENSPMGG00000002648	xrn1	98	78.964	ENSANAG00000029013	XRN1	85	77.708	Aotus_nancymaae
ENSPMGG00000002648	xrn1	99	86.446	ENSACLG00000004806	xrn1	57	85.692	Astatotilapia_calliptera
ENSPMGG00000002648	xrn1	99	78.550	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSPMGG00000002648	xrn1	98	76.777	ENSBTAG00000011524	XRN1	57	76.766	Bos_taurus
ENSPMGG00000002648	xrn1	98	78.493	ENSCJAG00000001872	XRN1	59	77.394	Callithrix_jacchus
ENSPMGG00000002648	xrn1	98	79.491	ENSCAFG00000007783	XRN1	57	79.491	Canis_familiaris
ENSPMGG00000002648	xrn1	98	78.807	ENSCAFG00020009120	XRN1	99	73.018	Canis_lupus_dingo
ENSPMGG00000002648	xrn1	98	76.935	ENSCHIG00000019192	XRN1	56	76.923	Capra_hircus
ENSPMGG00000002648	xrn1	98	77.373	ENSTSYG00000002705	XRN1	57	76.923	Carlito_syrichta
ENSPMGG00000002648	xrn1	96	58.767	ENSCAPG00000004604	-	99	58.140	Cavia_aperea
ENSPMGG00000002648	xrn1	98	78.807	ENSCCAG00000034800	XRN1	99	74.277	Cebus_capucinus
ENSPMGG00000002648	xrn1	98	78.650	ENSCATG00000041794	XRN1	57	77.394	Cercocebus_atys
ENSPMGG00000002648	xrn1	99	78.323	ENSCLAG00000001451	XRN1	99	74.690	Chinchilla_lanigera
ENSPMGG00000002648	xrn1	98	78.807	ENSCSAG00000011265	XRN1	57	77.551	Chlorocebus_sabaeus
ENSPMGG00000002648	xrn1	82	63.845	ENSCSAVG00000008584	-	61	63.492	Ciona_savignyi
ENSPMGG00000002648	xrn1	98	78.807	ENSCANG00000037495	XRN1	99	73.967	Colobus_angolensis_palliatus
ENSPMGG00000002648	xrn1	98	78.650	ENSCGRG00001019411	Xrn1	99	73.760	Cricetulus_griseus_chok1gshd
ENSPMGG00000002648	xrn1	98	78.650	ENSCGRG00000012464	Xrn1	99	73.760	Cricetulus_griseus_crigri
ENSPMGG00000002648	xrn1	99	87.159	ENSCSEG00000021285	xrn1	94	99.038	Cynoglossus_semilaevis
ENSPMGG00000002648	xrn1	99	85.370	ENSCVAG00000013089	xrn1	85	84.566	Cyprinodon_variegatus
ENSPMGG00000002648	xrn1	99	81.732	ENSDARG00000091652	xrn1	98	80.973	Danio_rerio
ENSPMGG00000002648	xrn1	99	77.708	ENSDORG00000013833	Xrn1	56	77.080	Dipodomys_ordii
ENSPMGG00000002648	xrn1	96	54.589	FBgn0020261	pcm	56	54.589	Drosophila_melanogaster
ENSPMGG00000002648	xrn1	98	79.180	ENSEASG00005002687	XRN1	99	74.483	Equus_asinus_asinus
ENSPMGG00000002648	xrn1	98	78.650	ENSECAG00000008301	XRN1	57	77.551	Equus_caballus
ENSPMGG00000002648	xrn1	99	81.847	ENSELUG00000000169	xrn1	57	82.962	Esox_lucius
ENSPMGG00000002648	xrn1	98	68.612	ENSFCAG00000027589	XRN1	99	79.610	Felis_catus
ENSPMGG00000002648	xrn1	98	77.866	ENSFALG00000007021	XRN1	54	75.868	Ficedula_albicollis
ENSPMGG00000002648	xrn1	99	78.481	ENSFDAG00000020494	XRN1	99	73.967	Fukomys_damarensis
ENSPMGG00000002648	xrn1	99	82.476	ENSGMOG00000006396	xrn1	57	80.868	Gadus_morhua
ENSPMGG00000002648	xrn1	98	78.571	ENSGALG00000002706	XRN1	55	75.906	Gallus_gallus
ENSPMGG00000002648	xrn1	99	85.510	ENSGACG00000014328	xrn1	57	85.510	Gasterosteus_aculeatus
ENSPMGG00000002648	xrn1	99	78.571	ENSGAGG00000017535	XRN1	58	78.571	Gopherus_agassizii
ENSPMGG00000002648	xrn1	98	78.493	ENSGGOG00000008047	XRN1	57	77.237	Gorilla_gorilla
ENSPMGG00000002648	xrn1	99	86.446	ENSHBUG00000005908	xrn1	98	79.296	Haplochromis_burtoni
ENSPMGG00000002648	xrn1	99	78.165	ENSHGLG00000014476	XRN1	99	74.174	Heterocephalus_glaber_female
ENSPMGG00000002648	xrn1	99	78.165	ENSHGLG00100015130	XRN1	99	74.174	Heterocephalus_glaber_male
ENSPMGG00000002648	xrn1	99	82.835	ENSHCOG00000014062	xrn1	61	82.544	Hippocampus_comes
ENSPMGG00000002648	xrn1	99	81.081	ENSIPUG00000015229	xrn1	58	81.081	Ictalurus_punctatus
ENSPMGG00000002648	xrn1	98	77.865	ENSSTOG00000013552	XRN1	99	74.380	Ictidomys_tridecemlineatus
ENSPMGG00000002648	xrn1	95	76.606	ENSJJAG00000010863	Xrn1	99	73.673	Jaculus_jaculus
ENSPMGG00000002648	xrn1	100	86.817	ENSKMAG00000021356	xrn1	95	84.829	Kryptolebias_marmoratus
ENSPMGG00000002648	xrn1	99	87.299	ENSLBEG00000018656	xrn1	99	98.095	Labrus_bergylta
ENSPMGG00000002648	xrn1	99	77.918	ENSLACG00000009020	XRN1	56	75.394	Latimeria_chalumnae
ENSPMGG00000002648	xrn1	99	82.616	ENSLOCG00000007944	xrn1	56	81.804	Lepisosteus_oculatus
ENSPMGG00000002648	xrn1	98	76.526	ENSLAFG00000015426	XRN1	90	77.080	Loxodonta_africana
ENSPMGG00000002648	xrn1	98	78.493	ENSMFAG00000032599	XRN1	57	77.394	Macaca_fascicularis
ENSPMGG00000002648	xrn1	98	78.493	ENSMMUG00000014038	XRN1	57	77.394	Macaca_mulatta
ENSPMGG00000002648	xrn1	98	78.336	ENSMNEG00000034217	XRN1	57	77.237	Macaca_nemestrina
ENSPMGG00000002648	xrn1	99	87.560	ENSMAMG00000013219	xrn1	92	87.339	Mastacembelus_armatus
ENSPMGG00000002648	xrn1	99	86.446	ENSMZEG00005015099	xrn1	57	86.010	Maylandia_zebra
ENSPMGG00000002648	xrn1	95	74.795	ENSMGAG00000006333	XRN1	55	72.727	Meleagris_gallopavo
ENSPMGG00000002648	xrn1	98	78.336	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSPMGG00000002648	xrn1	98	73.973	ENSMOCG00000008665	Xrn1	99	73.450	Microtus_ochrogaster
ENSPMGG00000002648	xrn1	54	77.612	ENSMMOG00000020896	-	96	77.612	Mola_mola
ENSPMGG00000002648	xrn1	98	78.165	ENSMODG00000021236	XRN1	56	78.481	Monodelphis_domestica
ENSPMGG00000002648	xrn1	99	85.542	ENSMALG00000004098	xrn1	57	85.503	Monopterus_albus
ENSPMGG00000002648	xrn1	98	73.795	MGP_CAROLIEiJ_G0032535	Xrn1	100	95.000	Mus_caroli
ENSPMGG00000002648	xrn1	98	78.022	ENSMUSG00000032410	Xrn1	100	95.000	Mus_musculus
ENSPMGG00000002648	xrn1	98	78.022	MGP_PahariEiJ_G0015404	Xrn1	100	95.000	Mus_pahari
ENSPMGG00000002648	xrn1	98	78.022	MGP_SPRETEiJ_G0033678	Xrn1	100	95.000	Mus_spretus
ENSPMGG00000002648	xrn1	98	77.778	ENSMPUG00000012040	XRN1	57	78.145	Mustela_putorius_furo
ENSPMGG00000002648	xrn1	98	78.493	ENSMLUG00000016885	XRN1	56	77.551	Myotis_lucifugus
ENSPMGG00000002648	xrn1	98	71.773	ENSNGAG00000023964	Xrn1	99	71.562	Nannospalax_galili
ENSPMGG00000002648	xrn1	98	78.650	ENSNLEG00000004726	XRN1	57	77.551	Nomascus_leucogenys
ENSPMGG00000002648	xrn1	99	86.145	ENSONIG00000016673	xrn1	64	86.624	Oreochromis_niloticus
ENSPMGG00000002648	xrn1	84	74.648	ENSOANG00000006735	XRN1	52	71.713	Ornithorhynchus_anatinus
ENSPMGG00000002648	xrn1	98	79.365	ENSOCUG00000001861	XRN1	55	78.425	Oryctolagus_cuniculus
ENSPMGG00000002648	xrn1	99	85.354	ENSORLG00000013005	xrn1	59	86.943	Oryzias_latipes
ENSPMGG00000002648	xrn1	99	87.781	ENSORLG00020005559	xrn1	59	87.781	Oryzias_latipes_hni
ENSPMGG00000002648	xrn1	99	87.460	ENSORLG00015022523	xrn1	61	87.460	Oryzias_latipes_hsok
ENSPMGG00000002648	xrn1	99	85.782	ENSOMEG00000015397	xrn1	62	85.942	Oryzias_melastigma
ENSPMGG00000002648	xrn1	98	73.460	ENSOGAG00000000170	XRN1	57	73.155	Otolemur_garnettii
ENSPMGG00000002648	xrn1	98	77.093	ENSOARG00000006343	XRN1	57	77.080	Ovis_aries
ENSPMGG00000002648	xrn1	98	78.650	ENSPPAG00000010180	XRN1	57	77.394	Pan_paniscus
ENSPMGG00000002648	xrn1	98	77.883	ENSPPRG00000007125	XRN1	57	77.900	Panthera_pardus
ENSPMGG00000002648	xrn1	98	78.233	ENSPTIG00000021081	XRN1	57	77.900	Panthera_tigris_altaica
ENSPMGG00000002648	xrn1	98	78.650	ENSPTRG00000015482	XRN1	57	77.394	Pan_troglodytes
ENSPMGG00000002648	xrn1	98	78.650	ENSPANG00000010638	XRN1	57	77.394	Papio_anubis
ENSPMGG00000002648	xrn1	98	76.995	ENSPSIG00000018050	XRN1	56	76.682	Pelodiscus_sinensis
ENSPMGG00000002648	xrn1	98	74.843	ENSPEMG00000020610	Xrn1	99	74.277	Peromyscus_maniculatus_bairdii
ENSPMGG00000002648	xrn1	84	53.858	ENSPMAG00000002975	xrn1	67	77.586	Petromyzon_marinus
ENSPMGG00000002648	xrn1	98	79.360	ENSPCIG00000028735	XRN1	99	75.078	Phascolarctos_cinereus
ENSPMGG00000002648	xrn1	99	86.145	ENSPFOG00000013932	xrn1	63	85.799	Poecilia_formosa
ENSPMGG00000002648	xrn1	99	86.145	ENSPLAG00000021653	xrn1	63	85.669	Poecilia_latipinna
ENSPMGG00000002648	xrn1	99	86.212	ENSPMEG00000003076	xrn1	61	85.799	Poecilia_mexicana
ENSPMGG00000002648	xrn1	99	85.918	ENSPREG00000021147	xrn1	59	84.911	Poecilia_reticulata
ENSPMGG00000002648	xrn1	98	78.022	ENSPPYG00000014172	XRN1	57	77.708	Pongo_abelii
ENSPMGG00000002648	xrn1	89	80.256	ENSPCAG00000005638	XRN1	57	78.623	Procavia_capensis
ENSPMGG00000002648	xrn1	98	78.022	ENSPCOG00000013089	XRN1	99	74.380	Propithecus_coquereli
ENSPMGG00000002648	xrn1	98	72.799	ENSPVAG00000016265	XRN1	52	86.416	Pteropus_vampyrus
ENSPMGG00000002648	xrn1	99	86.145	ENSPNYG00000010570	xrn1	58	85.799	Pundamilia_nyererei
ENSPMGG00000002648	xrn1	99	76.839	ENSPNAG00000023531	xrn1	58	76.839	Pygocentrus_nattereri
ENSPMGG00000002648	xrn1	98	78.964	ENSRNOG00000042951	Xrn1	56	77.708	Rattus_norvegicus
ENSPMGG00000002648	xrn1	98	78.493	ENSRBIG00000041227	XRN1	57	77.394	Rhinopithecus_bieti
ENSPMGG00000002648	xrn1	98	78.650	ENSSBOG00000029561	XRN1	57	77.551	Saimiri_boliviensis_boliviensis
ENSPMGG00000002648	xrn1	95	77.265	ENSSHAG00000016207	XRN1	56	77.595	Sarcophilus_harrisii
ENSPMGG00000002648	xrn1	99	80.727	ENSSFOG00015024211	xrn1	59	79.463	Scleropages_formosus
ENSPMGG00000002648	xrn1	99	86.010	ENSSMAG00000016534	xrn1	61	84.738	Scophthalmus_maximus
ENSPMGG00000002648	xrn1	99	86.145	ENSSDUG00000010306	xrn1	62	87.739	Seriola_dumerili
ENSPMGG00000002648	xrn1	99	86.145	ENSSLDG00000021543	xrn1	61	87.580	Seriola_lalandi_dorsalis
ENSPMGG00000002648	xrn1	89	76.923	ENSSARG00000007741	-	63	75.777	Sorex_araneus
ENSPMGG00000002648	xrn1	50	84.553	ENSSPAG00000009856	-	96	84.350	Stegastes_partitus
ENSPMGG00000002648	xrn1	98	78.025	ENSTGUG00000008498	XRN1	56	76.025	Taeniopygia_guttata
ENSPMGG00000002648	xrn1	99	86.013	ENSTRUG00000004895	xrn1	96	85.991	Takifugu_rubripes
ENSPMGG00000002648	xrn1	96	82.702	ENSTNIG00000017615	xrn1	57	81.657	Tetraodon_nigroviridis
ENSPMGG00000002648	xrn1	90	86.559	ENSTBEG00000003256	XRN1	54	86.559	Tupaia_belangeri
ENSPMGG00000002648	xrn1	98	74.882	ENSTTRG00000012914	XRN1	57	74.725	Tursiops_truncatus
ENSPMGG00000002648	xrn1	98	75.917	ENSUAMG00000001608	XRN1	99	72.107	Ursus_americanus
ENSPMGG00000002648	xrn1	98	78.336	ENSUMAG00000013625	XRN1	56	77.865	Ursus_maritimus
ENSPMGG00000002648	xrn1	98	76.995	ENSVPAG00000004690	XRN1	57	77.516	Vicugna_pacos
ENSPMGG00000002648	xrn1	98	79.520	ENSVVUG00000024461	XRN1	99	80.300	Vulpes_vulpes
ENSPMGG00000002648	xrn1	98	77.865	ENSXETG00000000619	xrn1	97	86.559	Xenopus_tropicalis
ENSPMGG00000002648	xrn1	99	87.460	ENSXCOG00000007917	xrn1	58	87.460	Xiphophorus_couchianus
ENSPMGG00000002648	xrn1	99	86.656	ENSXMAG00000018320	xrn1	60	85.048	Xiphophorus_maculatus