EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMGG00000003569 (Gene tree)
Gene ID: -
Gene Symbol: rbm42
Alias: -
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Periophthalmus_magnuspinnatus
Status: putative
Strand: Minus strand
Length: 6928 bases
Position: chrKN468486.1:138816-145743
Accession: ZDB-GENE-040809-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMGP00000004955	RRM_1	PF00076.22	3.7e-18	1	1
ENSPMGP00000004678	RRM_1	PF00076.22	5.1e-18	1	1
ENSPMGP00000004963	RRM_1	PF00076.22	5e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMGT00000005258	-	789	-	ENSPMGP00000004956	262 (aa)	-	-
ENSPMGT00000004967	-	984	-	ENSPMGP00000004678	327 (aa)	-	-
ENSPMGT00000005266	-	387	-	ENSPMGP00000004963	128 (aa)	-	-
ENSPMGT00000005193	-	852	-	ENSPMGP00000004894	283 (aa)	-	-
ENSPMGT00000005257	-	843	-	ENSPMGP00000004955	280 (aa)	-	-

Gene Model

Click here to download ENSPMGG00000003569's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMGG00000003569's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMGG00000003569	rbm42	100	98.571	ENSAPOG00000015109	rbm42	73	86.559	Acanthochromis_polyacanthus
ENSPMGG00000003569	rbm42	100	98.571	ENSACIG00000010771	rbm42	83	79.104	Amphilophus_citrinellus
ENSPMGG00000003569	rbm42	100	98.571	ENSAOCG00000008873	rbm42	93	65.441	Amphiprion_ocellaris
ENSPMGG00000003569	rbm42	100	98.571	ENSAPEG00000012051	rbm42	91	65.441	Amphiprion_percula
ENSPMGG00000003569	rbm42	100	97.143	ENSATEG00000000536	rbm42	77	85.484	Anabas_testudineus
ENSPMGG00000003569	rbm42	100	97.143	ENSACLG00000004988	rbm42	93	67.647	Astatotilapia_calliptera
ENSPMGG00000003569	rbm42	100	97.143	ENSAMXG00000016545	rbm42	73	81.818	Astyanax_mexicanus
ENSPMGG00000003569	rbm42	54	71.014	WBGene00021901	tag-262	55	54.167	Caenorhabditis_elegans
ENSPMGG00000003569	rbm42	55	92.857	ENSCGRG00000016763	-	60	85.517	Cricetulus_griseus_crigri
ENSPMGG00000003569	rbm42	91	95.714	ENSCSEG00000010248	rbm42	73	82.540	Cynoglossus_semilaevis
ENSPMGG00000003569	rbm42	100	98.571	ENSCVAG00000015589	rbm42	96	62.633	Cyprinodon_variegatus
ENSPMGG00000003569	rbm42	100	94.286	ENSDARG00000039910	rbm42	73	79.144	Danio_rerio
ENSPMGG00000003569	rbm42	98	38.961	FBgn0037342	CG2931	94	38.462	Drosophila_melanogaster
ENSPMGG00000003569	rbm42	100	97.143	ENSELUG00000022403	rbm42	73	81.053	Esox_lucius
ENSPMGG00000003569	rbm42	92	63.345	ENSFHEG00000006764	rbm42	91	64.664	Fundulus_heteroclitus
ENSPMGG00000003569	rbm42	100	95.714	ENSGMOG00000012660	rbm42	72	80.645	Gadus_morhua
ENSPMGG00000003569	rbm42	55	98.571	ENSGAFG00000009059	rbm42	74	71.552	Gambusia_affinis
ENSPMGG00000003569	rbm42	100	97.143	ENSGACG00000004170	rbm42	99	66.168	Gasterosteus_aculeatus
ENSPMGG00000003569	rbm42	100	97.143	ENSHBUG00000011141	rbm42	93	67.279	Haplochromis_burtoni
ENSPMGG00000003569	rbm42	100	95.714	ENSHCOG00000021214	rbm42	100	61.279	Hippocampus_comes
ENSPMGG00000003569	rbm42	100	94.286	ENSIPUG00000022365	rbm42	73	80.214	Ictalurus_punctatus
ENSPMGG00000003569	rbm42	71	97.059	ENSKMAG00000015287	rbm42	85	68.718	Kryptolebias_marmoratus
ENSPMGG00000003569	rbm42	55	97.143	ENSLBEG00000004578	-	73	65.918	Labrus_bergylta
ENSPMGG00000003569	rbm42	100	97.143	ENSLBEG00000017547	rbm42	91	65.918	Labrus_bergylta
ENSPMGG00000003569	rbm42	100	95.714	ENSLOCG00000003368	rbm42	74	77.419	Lepisosteus_oculatus
ENSPMGG00000003569	rbm42	100	98.571	ENSMAMG00000006708	rbm42	90	67.692	Mastacembelus_armatus
ENSPMGG00000003569	rbm42	100	97.143	ENSMZEG00005025234	rbm42	93	67.647	Maylandia_zebra
ENSPMGG00000003569	rbm42	98	70.748	ENSMAUG00000011346	-	86	86.735	Mesocricetus_auratus
ENSPMGG00000003569	rbm42	100	98.571	ENSMALG00000015720	rbm42	91	65.672	Monopterus_albus
ENSPMGG00000003569	rbm42	100	98.571	ENSONIG00000008029	rbm42	92	67.754	Oreochromis_niloticus
ENSPMGG00000003569	rbm42	100	95.714	ENSORLG00020022507	rbm42	100	56.995	Oryzias_latipes_hni
ENSPMGG00000003569	rbm42	100	95.714	ENSORLG00015000659	rbm42	96	65.441	Oryzias_latipes_hsok
ENSPMGG00000003569	rbm42	55	97.143	ENSOMEG00000014332	rbm42	86	71.552	Oryzias_melastigma
ENSPMGG00000003569	rbm42	100	97.143	ENSPKIG00000015165	rbm42	74	80.000	Paramormyrops_kingsleyae
ENSPMGG00000003569	rbm42	55	95.714	ENSPSIG00000013935	-	55	85.366	Pelodiscus_sinensis
ENSPMGG00000003569	rbm42	100	98.571	ENSPFOG00000007701	rbm42	92	68.651	Poecilia_formosa
ENSPMGG00000003569	rbm42	100	98.571	ENSPLAG00000009405	rbm42	92	68.651	Poecilia_latipinna
ENSPMGG00000003569	rbm42	100	98.571	ENSPMEG00000010375	rbm42	87	72.650	Poecilia_mexicana
ENSPMGG00000003569	rbm42	100	98.571	ENSPREG00000018102	rbm42	92	68.254	Poecilia_reticulata
ENSPMGG00000003569	rbm42	100	97.143	ENSPNYG00000014460	rbm42	93	66.544	Pundamilia_nyererei
ENSPMGG00000003569	rbm42	100	95.714	ENSPNAG00000009961	rbm42	100	56.992	Pygocentrus_nattereri
ENSPMGG00000003569	rbm42	100	95.714	ENSSFOG00015019227	rbm42	76	78.646	Scleropages_formosus
ENSPMGG00000003569	rbm42	100	97.143	ENSSMAG00000011935	rbm42	73	83.152	Scophthalmus_maximus
ENSPMGG00000003569	rbm42	100	97.143	ENSSDUG00000004033	rbm42	93	65.441	Seriola_dumerili
ENSPMGG00000003569	rbm42	100	97.143	ENSSLDG00000009918	rbm42	100	77.778	Seriola_lalandi_dorsalis
ENSPMGG00000003569	rbm42	97	66.667	ENSSPUG00000011078	-	78	95.714	Sphenodon_punctatus
ENSPMGG00000003569	rbm42	100	98.571	ENSSPAG00000019871	rbm42	93	66.544	Stegastes_partitus
ENSPMGG00000003569	rbm42	100	95.714	ENSTRUG00000024586	-	66	75.568	Takifugu_rubripes
ENSPMGG00000003569	rbm42	98	95.714	ENSTNIG00000011669	rbm42	75	75.758	Tetraodon_nigroviridis
ENSPMGG00000003569	rbm42	100	91.429	ENSXETG00000017599	rbm42	86	64.732	Xenopus_tropicalis
ENSPMGG00000003569	rbm42	100	98.571	ENSXMAG00000012827	rbm42	92	68.254	Xiphophorus_maculatus