EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMGG00000004709 (Gene tree)
Gene ID: -
Gene Symbol: ncl
Alias: -
Full Name: nucleolin
Gene Type: protein_coding
Species: Periophthalmus_magnuspinnatus
Status: putative
Strand: Minus strand
Length: 4489 bases
Position: chrKN465289.1:928741-933229
Accession: ZDB-GENE-030131-6986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMGP00000005607	RRM_1	PF00076.22	3.6e-56	1	4
ENSPMGP00000005607	RRM_1	PF00076.22	3.6e-56	2	4
ENSPMGP00000005607	RRM_1	PF00076.22	3.6e-56	3	4
ENSPMGP00000005607	RRM_1	PF00076.22	3.6e-56	4	4
ENSPMGP00000005615	RRM_1	PF00076.22	4.1e-49	1	4
ENSPMGP00000005615	RRM_1	PF00076.22	4.1e-49	2	4
ENSPMGP00000005615	RRM_1	PF00076.22	4.1e-49	3	4
ENSPMGP00000005615	RRM_1	PF00076.22	4.1e-49	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMGT00000005957	-	1998	-	ENSPMGP00000005615	665 (aa)	-	-
ENSPMGT00000005949	-	1155	-	ENSPMGP00000005607	384 (aa)	-	-

Gene Model

Click here to download ENSPMGG00000004709's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMGG00000004709's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMGG00000004709	ncl	84	81.759	ENSAPOG00000023888	ncl	59	80.523	Acanthochromis_polyacanthus
ENSPMGG00000004709	ncl	88	38.655	ENSAPOG00000014534	-	67	39.119	Acanthochromis_polyacanthus
ENSPMGG00000004709	ncl	86	71.299	ENSACIG00000013234	ncl	62	72.654	Amphilophus_citrinellus
ENSPMGG00000004709	ncl	87	37.216	ENSAOCG00000014792	-	61	38.961	Amphiprion_ocellaris
ENSPMGG00000004709	ncl	84	82.736	ENSAOCG00000003133	ncl	52	82.736	Amphiprion_ocellaris
ENSPMGG00000004709	ncl	87	37.500	ENSAPEG00000013612	-	60	39.221	Amphiprion_percula
ENSPMGG00000004709	ncl	84	82.736	ENSAPEG00000002769	ncl	59	80.569	Amphiprion_percula
ENSPMGG00000004709	ncl	94	41.316	ENSATEG00000019862	-	80	43.523	Anabas_testudineus
ENSPMGG00000004709	ncl	82	61.465	ENSAPLG00000012897	-	61	61.465	Anas_platyrhynchos
ENSPMGG00000004709	ncl	79	64.423	ENSACAG00000001006	-	52	61.842	Anolis_carolinensis
ENSPMGG00000004709	ncl	80	70.130	ENSACLG00000026031	ncl	84	69.903	Astatotilapia_calliptera
ENSPMGG00000004709	ncl	79	72.964	ENSAMXG00000001647	ncl	81	73.000	Astyanax_mexicanus
ENSPMGG00000004709	ncl	82	49.345	ENSCHIG00000003401	-	52	49.345	Capra_hircus
ENSPMGG00000004709	ncl	79	41.613	ENSCHIG00000012665	-	54	41.587	Capra_hircus
ENSPMGG00000004709	ncl	98	73.804	ENSCSEG00000015089	ncl	68	74.307	Cynoglossus_semilaevis
ENSPMGG00000004709	ncl	84	75.884	ENSCVAG00000012600	ncl	61	74.641	Cyprinodon_variegatus
ENSPMGG00000004709	ncl	82	75.490	ENSDARG00000002710	ncl	81	74.603	Danio_rerio
ENSPMGG00000004709	ncl	84	44.410	ENSDNOG00000031611	-	72	44.164	Dasypus_novemcinctus
ENSPMGG00000004709	ncl	79	47.869	ENSDNOG00000040257	-	61	47.645	Dasypus_novemcinctus
ENSPMGG00000004709	ncl	61	55.405	ENSDNOG00000040440	-	99	54.545	Dasypus_novemcinctus
ENSPMGG00000004709	ncl	89	44.211	ENSEBUG00000016173	ncl	55	45.176	Eptatretus_burgeri
ENSPMGG00000004709	ncl	82	49.843	ENSELUG00000022826	-	83	49.866	Esox_lucius
ENSPMGG00000004709	ncl	83	72.026	ENSELUG00000006033	ncl	51	71.678	Esox_lucius
ENSPMGG00000004709	ncl	86	73.041	ENSFHEG00000018000	ncl	65	72.922	Fundulus_heteroclitus
ENSPMGG00000004709	ncl	81	68.810	ENSGMOG00000001341	ncl	66	67.788	Gadus_morhua
ENSPMGG00000004709	ncl	82	62.500	ENSGALG00000032930	NCL	51	62.500	Gallus_gallus
ENSPMGG00000004709	ncl	83	75.884	ENSGAFG00000015375	ncl	57	74.347	Gambusia_affinis
ENSPMGG00000004709	ncl	84	76.797	ENSGACG00000008970	ncl	64	73.227	Gasterosteus_aculeatus
ENSPMGG00000004709	ncl	79	64.013	ENSGAGG00000013330	-	56	60.471	Gopherus_agassizii
ENSPMGG00000004709	ncl	79	72.787	ENSHBUG00000006869	ncl	60	71.734	Haplochromis_burtoni
ENSPMGG00000004709	ncl	80	80.065	ENSHCOG00000010234	ncl	60	74.648	Hippocampus_comes
ENSPMGG00000004709	ncl	81	71.246	ENSIPUG00000024556	ncl	80	71.246	Ictalurus_punctatus
ENSPMGG00000004709	ncl	82	80.130	ENSKMAG00000008111	ncl	53	80.456	Kryptolebias_marmoratus
ENSPMGG00000004709	ncl	84	41.369	ENSLBEG00000014278	-	82	40.884	Labrus_bergylta
ENSPMGG00000004709	ncl	84	82.085	ENSLBEG00000019073	ncl	62	78.897	Labrus_bergylta
ENSPMGG00000004709	ncl	84	41.369	ENSLBEG00000007915	-	66	41.753	Labrus_bergylta
ENSPMGG00000004709	ncl	80	53.846	ENSLACG00000022167	-	79	51.323	Latimeria_chalumnae
ENSPMGG00000004709	ncl	79	66.238	ENSLACG00000009328	ncl	58	66.450	Latimeria_chalumnae
ENSPMGG00000004709	ncl	99	63.377	ENSLOCG00000004828	ncl	57	63.981	Lepisosteus_oculatus
ENSPMGG00000004709	ncl	86	37.931	ENSMAMG00000003479	-	69	37.696	Mastacembelus_armatus
ENSPMGG00000004709	ncl	82	61.859	ENSMGAG00000008147	-	85	58.602	Meleagris_gallopavo
ENSPMGG00000004709	ncl	81	76.358	ENSMMOG00000008553	ncl	84	78.275	Mola_mola
ENSPMGG00000004709	ncl	78	58.147	ENSMODG00000002470	-	56	57.500	Monodelphis_domestica
ENSPMGG00000004709	ncl	89	66.722	ENSMALG00000014827	ncl	58	75.819	Monopterus_albus
ENSPMGG00000004709	ncl	80	42.537	ENSMPUG00000001663	-	67	39.660	Mustela_putorius_furo
ENSPMGG00000004709	ncl	85	70.427	ENSNBRG00000000146	-	97	70.303	Neolamprologus_brichardi
ENSPMGG00000004709	ncl	73	72.242	ENSNBRG00000001232	ncl	79	72.598	Neolamprologus_brichardi
ENSPMGG00000004709	ncl	78	60.131	ENSMEUG00000012335	-	50	59.425	Notamacropus_eugenii
ENSPMGG00000004709	ncl	80	35.220	ENSONIG00000010631	-	97	36.508	Oreochromis_niloticus
ENSPMGG00000004709	ncl	84	62.939	ENSOANG00000008732	-	61	59.530	Ornithorhynchus_anatinus
ENSPMGG00000004709	ncl	83	35.503	ENSORLG00000004645	-	83	36.126	Oryzias_latipes
ENSPMGG00000004709	ncl	85	35.260	ENSORLG00020003497	-	74	36.126	Oryzias_latipes_hni
ENSPMGG00000004709	ncl	83	79.479	ENSORLG00020017943	ncl	67	77.381	Oryzias_latipes_hni
ENSPMGG00000004709	ncl	83	36.905	ENSORLG00015006613	-	77	36.387	Oryzias_latipes_hsok
ENSPMGG00000004709	ncl	81	78.275	ENSORLG00015013815	ncl	98	72.527	Oryzias_latipes_hsok
ENSPMGG00000004709	ncl	83	35.821	ENSOMEG00000015864	-	82	37.076	Oryzias_melastigma
ENSPMGG00000004709	ncl	82	77.597	ENSPKIG00000002604	ncl	62	71.983	Paramormyrops_kingsleyae
ENSPMGG00000004709	ncl	80	62.939	ENSPSIG00000002361	-	55	62.821	Pelodiscus_sinensis
ENSPMGG00000004709	ncl	79	47.148	ENSPMAG00000003855	ncl	59	37.900	Petromyzon_marinus
ENSPMGG00000004709	ncl	99	71.391	ENSPFOG00000024205	ncl	57	75.772	Poecilia_formosa
ENSPMGG00000004709	ncl	80	72.168	ENSPLAG00000024026	ncl	57	76.190	Poecilia_latipinna
ENSPMGG00000004709	ncl	99	71.391	ENSPMEG00000006000	ncl	57	75.714	Poecilia_mexicana
ENSPMGG00000004709	ncl	79	72.787	ENSPNYG00000020494	ncl	60	72.554	Pundamilia_nyererei
ENSPMGG00000004709	ncl	61	70.000	ENSPNAG00000006192	ncl	58	72.104	Pygocentrus_nattereri
ENSPMGG00000004709	ncl	89	53.582	ENSSHAG00000002702	-	59	54.642	Sarcophilus_harrisii
ENSPMGG00000004709	ncl	83	55.026	ENSSHAG00000007489	-	65	48.555	Sarcophilus_harrisii
ENSPMGG00000004709	ncl	83	76.433	ENSSFOG00015008583	ncl	66	74.057	Scleropages_formosus
ENSPMGG00000004709	ncl	88	42.980	ENSSFOG00015013153	-	79	42.997	Scleropages_formosus
ENSPMGG00000004709	ncl	83	41.441	ENSSMAG00000007582	-	61	43.832	Scophthalmus_maximus
ENSPMGG00000004709	ncl	84	77.994	ENSSMAG00000021241	ncl	53	77.814	Scophthalmus_maximus
ENSPMGG00000004709	ncl	84	81.639	ENSSDUG00000006128	ncl	98	77.829	Seriola_dumerili
ENSPMGG00000004709	ncl	92	39.946	ENSSDUG00000010922	-	70	40.992	Seriola_dumerili
ENSPMGG00000004709	ncl	92	39.891	ENSSLDG00000015784	-	65	40.625	Seriola_lalandi_dorsalis
ENSPMGG00000004709	ncl	84	81.046	ENSSLDG00000002012	ncl	52	81.494	Seriola_lalandi_dorsalis
ENSPMGG00000004709	ncl	79	62.080	ENSSPUG00000008244	-	57	60.401	Sphenodon_punctatus
ENSPMGG00000004709	ncl	73	81.272	ENSSPAG00000002637	ncl	79	81.272	Stegastes_partitus
ENSPMGG00000004709	ncl	87	41.279	ENSSPAG00000001859	-	61	41.067	Stegastes_partitus
ENSPMGG00000004709	ncl	79	60.323	ENSTGUG00000009782	-	60	57.441	Taeniopygia_guttata
ENSPMGG00000004709	ncl	83	79.153	ENSTRUG00000008185	ncl	62	75.650	Takifugu_rubripes
ENSPMGG00000004709	ncl	89	79.344	ENSTNIG00000012186	ncl	59	79.153	Tetraodon_nigroviridis
ENSPMGG00000004709	ncl	79	62.258	ENSXETG00000009517	ncl	54	60.638	Xenopus_tropicalis
ENSPMGG00000004709	ncl	93	49.867	ENSXCOG00000003524	ncl	100	59.569	Xiphophorus_couchianus
ENSPMGG00000004709	ncl	82	38.182	ENSXCOG00000007369	-	91	38.994	Xiphophorus_couchianus
ENSPMGG00000004709	ncl	83	76.774	ENSXMAG00000005914	ncl	58	75.650	Xiphophorus_maculatus