EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMGG00000006141 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Periophthalmus_magnuspinnatus
Status: putative
Strand: Minus strand
Length: 9901 bases
Position: chrKN463489.1:3498-13398
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMGP00000007409	CPSF73-100_C	PF11718.8	1.4e-39	1	1
ENSPMGP00000007409	Beta-Casp	PF10996.8	4.8e-34	1	1
ENSPMGP00000007409	Lactamase_B	PF00753.27	5.4e-08	1	1
ENSPMGP00000007409	RMMBL	PF07521.12	1.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMGT00000007887	-	1743	-	ENSPMGP00000007409	580 (aa)	-	-

Gene Model

Click here to download ENSPMGG00000006141's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMGG00000006141's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMGG00000006141	-	99	85.340	ENSG00000119203	CPSF3	86	90.756	Homo_sapiens
ENSPMGG00000006141	-	78	94.444	ENSAPOG00000012241	CPSF3	85	94.444	Acanthochromis_polyacanthus
ENSPMGG00000006141	-	95	94.918	ENSAPOG00000022087	cpsf3	94	94.918	Acanthochromis_polyacanthus
ENSPMGG00000006141	-	99	85.340	ENSAMEG00000008493	CPSF3	83	85.340	Ailuropoda_melanoleuca
ENSPMGG00000006141	-	100	86.076	ENSACIG00000009846	cpsf3	100	86.076	Amphilophus_citrinellus
ENSPMGG00000006141	-	95	91.289	ENSACIG00000023663	CPSF3	86	91.289	Amphilophus_citrinellus
ENSPMGG00000006141	-	100	85.331	ENSAOCG00000022056	cpsf3	90	92.670	Amphiprion_ocellaris
ENSPMGG00000006141	-	99	85.366	ENSAOCG00000010077	CPSF3	99	85.366	Amphiprion_ocellaris
ENSPMGG00000006141	-	99	84.000	ENSAPEG00000021167	CPSF3	99	84.000	Amphiprion_percula
ENSPMGG00000006141	-	100	87.781	ENSAPEG00000019526	cpsf3	100	87.781	Amphiprion_percula
ENSPMGG00000006141	-	99	74.702	ENSATEG00000014525	CPSF3	90	80.524	Anabas_testudineus
ENSPMGG00000006141	-	99	87.500	ENSATEG00000003959	cpsf3	99	87.500	Anabas_testudineus
ENSPMGG00000006141	-	95	87.818	ENSAPLG00000006941	CPSF3	80	87.818	Anas_platyrhynchos
ENSPMGG00000006141	-	95	86.775	ENSACAG00000001759	CPSF3	86	86.775	Anolis_carolinensis
ENSPMGG00000006141	-	99	79.058	ENSANAG00000031254	CPSF3	81	81.703	Aotus_nancymaae
ENSPMGG00000006141	-	93	94.824	ENSACLG00000014484	cpsf3	100	87.380	Astatotilapia_calliptera
ENSPMGG00000006141	-	96	91.187	ENSACLG00000018846	CPSF3	87	91.187	Astatotilapia_calliptera
ENSPMGG00000006141	-	100	82.958	ENSAMXG00000004786	cpsf3	100	82.958	Astyanax_mexicanus
ENSPMGG00000006141	-	99	85.340	ENSBTAG00000019735	CPSF3	83	85.340	Bos_taurus
ENSPMGG00000006141	-	93	57.734	WBGene00013460	cpsf-3	79	57.734	Caenorhabditis_elegans
ENSPMGG00000006141	-	99	85.340	ENSCJAG00000006276	CPSF3	83	85.340	Callithrix_jacchus
ENSPMGG00000006141	-	99	85.340	ENSCAFG00000003375	CPSF3	79	85.340	Canis_familiaris
ENSPMGG00000006141	-	95	87.500	ENSCAFG00020026799	CPSF3	89	87.500	Canis_lupus_dingo
ENSPMGG00000006141	-	99	85.340	ENSCHIG00000013973	CPSF3	83	85.340	Capra_hircus
ENSPMGG00000006141	-	95	87.500	ENSTSYG00000002967	CPSF3	80	87.500	Carlito_syrichta
ENSPMGG00000006141	-	99	85.515	ENSCAPG00000013851	CPSF3	85	85.515	Cavia_aperea
ENSPMGG00000006141	-	99	85.515	ENSCPOG00000011299	CPSF3	83	85.515	Cavia_porcellus
ENSPMGG00000006141	-	99	85.340	ENSCCAG00000036730	CPSF3	84	85.340	Cebus_capucinus
ENSPMGG00000006141	-	91	89.184	ENSCATG00000014770	CPSF3	90	89.184	Cercocebus_atys
ENSPMGG00000006141	-	99	85.340	ENSCLAG00000002727	CPSF3	83	85.340	Chinchilla_lanigera
ENSPMGG00000006141	-	99	76.091	ENSCSAG00000007125	CPSF3	81	76.091	Chlorocebus_sabaeus
ENSPMGG00000006141	-	85	66.463	ENSCHOG00000000180	CPSF3	74	66.463	Choloepus_hoffmanni
ENSPMGG00000006141	-	95	87.455	ENSCPBG00000014074	CPSF3	79	87.455	Chrysemys_picta_bellii
ENSPMGG00000006141	-	98	69.406	ENSCING00000007214	-	82	69.406	Ciona_intestinalis
ENSPMGG00000006141	-	99	71.870	ENSCANG00000034435	CPSF3	91	71.870	Colobus_angolensis_palliatus
ENSPMGG00000006141	-	95	87.138	ENSCGRG00001013134	Cpsf3	80	87.138	Cricetulus_griseus_chok1gshd
ENSPMGG00000006141	-	95	87.138	ENSCGRG00000018319	Cpsf3	80	87.138	Cricetulus_griseus_crigri
ENSPMGG00000006141	-	94	90.792	ENSCSEG00000002021	CPSF3	100	82.022	Cynoglossus_semilaevis
ENSPMGG00000006141	-	99	81.369	ENSCVAG00000015067	CPSF3	82	88.360	Cyprinodon_variegatus
ENSPMGG00000006141	-	95	83.113	ENSDARG00000027649	cpsf3	78	90.792	Danio_rerio
ENSPMGG00000006141	-	99	83.972	ENSDNOG00000008940	CPSF3	79	83.972	Dasypus_novemcinctus
ENSPMGG00000006141	-	99	85.515	ENSDORG00000014263	Cpsf3	87	85.515	Dipodomys_ordii
ENSPMGG00000006141	-	96	67.928	FBgn0261065	Cpsf73	81	67.928	Drosophila_melanogaster
ENSPMGG00000006141	-	95	76.630	ENSETEG00000003893	CPSF3	84	76.630	Echinops_telfairi
ENSPMGG00000006141	-	94	82.784	ENSEBUG00000009018	cpsf3	77	82.784	Eptatretus_burgeri
ENSPMGG00000006141	-	99	85.340	ENSEASG00005003970	CPSF3	83	85.340	Equus_asinus_asinus
ENSPMGG00000006141	-	99	85.340	ENSECAG00000019911	CPSF3	88	88.419	Equus_caballus
ENSPMGG00000006141	-	95	70.109	ENSEEUG00000015422	CPSF3	80	70.109	Erinaceus_europaeus
ENSPMGG00000006141	-	99	84.370	ENSELUG00000013775	cpsf3	90	89.005	Esox_lucius
ENSPMGG00000006141	-	99	85.340	ENSFCAG00000007852	CPSF3	87	85.340	Felis_catus
ENSPMGG00000006141	-	98	85.387	ENSFALG00000006572	CPSF3	87	85.387	Ficedula_albicollis
ENSPMGG00000006141	-	99	85.166	ENSFDAG00000006317	CPSF3	82	85.166	Fukomys_damarensis
ENSPMGG00000006141	-	59	68.966	ENSFHEG00000012186	CPSF3	83	68.966	Fundulus_heteroclitus
ENSPMGG00000006141	-	100	77.843	ENSFHEG00000014774	cpsf3	82	90.000	Fundulus_heteroclitus
ENSPMGG00000006141	-	94	85.382	ENSGMOG00000003157	cpsf3	78	93.161	Gadus_morhua
ENSPMGG00000006141	-	98	85.211	ENSGALG00000016424	CPSF3	89	85.211	Gallus_gallus
ENSPMGG00000006141	-	99	80.892	ENSGAFG00000008016	CPSF3	82	88.007	Gambusia_affinis
ENSPMGG00000006141	-	100	84.579	ENSGAFG00000019449	cpsf3	91	90.925	Gambusia_affinis
ENSPMGG00000006141	-	66	87.632	ENSGAGG00000025583	CPSF3	76	87.632	Gopherus_agassizii
ENSPMGG00000006141	-	99	85.340	ENSGGOG00000001757	CPSF3	89	85.340	Gorilla_gorilla
ENSPMGG00000006141	-	60	75.622	ENSHBUG00000014332	CPSF3	100	75.622	Haplochromis_burtoni
ENSPMGG00000006141	-	100	87.380	ENSHBUG00000001188	cpsf3	100	87.380	Haplochromis_burtoni
ENSPMGG00000006141	-	95	87.161	ENSHGLG00000000666	CPSF3	80	87.161	Heterocephalus_glaber_female
ENSPMGG00000006141	-	95	87.161	ENSHGLG00100007765	CPSF3	80	87.161	Heterocephalus_glaber_male
ENSPMGG00000006141	-	99	80.255	ENSHCOG00000015957	CPSF3	81	87.302	Hippocampus_comes
ENSPMGG00000006141	-	99	83.814	ENSHCOG00000007251	cpsf3	82	89.594	Hippocampus_comes
ENSPMGG00000006141	-	99	81.300	ENSIPUG00000023488	cpsf3	99	81.300	Ictalurus_punctatus
ENSPMGG00000006141	-	95	87.500	ENSSTOG00000004476	CPSF3	80	87.500	Ictidomys_tridecemlineatus
ENSPMGG00000006141	-	99	84.817	ENSJJAG00000023415	Cpsf3	83	84.817	Jaculus_jaculus
ENSPMGG00000006141	-	99	80.573	ENSKMAG00000007317	CPSF3	82	87.478	Kryptolebias_marmoratus
ENSPMGG00000006141	-	100	78.426	ENSKMAG00000002806	cpsf3	82	90.653	Kryptolebias_marmoratus
ENSPMGG00000006141	-	96	82.680	ENSLBEG00000013492	CPSF3	83	90.018	Labrus_bergylta
ENSPMGG00000006141	-	55	93.082	ENSLBEG00000015018	-	86	93.082	Labrus_bergylta
ENSPMGG00000006141	-	98	86.003	ENSLBEG00000020569	cpsf3	86	86.003	Labrus_bergylta
ENSPMGG00000006141	-	95	80.797	ENSLACG00000008308	CPSF3	80	80.797	Latimeria_chalumnae
ENSPMGG00000006141	-	99	80.190	ENSLOCG00000016823	cpsf3	82	86.842	Lepisosteus_oculatus
ENSPMGG00000006141	-	99	85.515	ENSLAFG00000009467	CPSF3	83	85.515	Loxodonta_africana
ENSPMGG00000006141	-	99	85.340	ENSMFAG00000001339	CPSF3	84	91.142	Macaca_fascicularis
ENSPMGG00000006141	-	99	85.340	ENSMMUG00000018038	CPSF3	82	91.142	Macaca_mulatta
ENSPMGG00000006141	-	89	91.960	ENSMNEG00000039447	CPSF3	81	91.960	Macaca_nemestrina
ENSPMGG00000006141	-	99	85.340	ENSMLEG00000026825	CPSF3	82	93.976	Mandrillus_leucophaeus
ENSPMGG00000006141	-	100	82.753	ENSMAMG00000008835	CPSF3	100	82.753	Mastacembelus_armatus
ENSPMGG00000006141	-	100	92.857	ENSMAMG00000003076	cpsf3	100	92.857	Mastacembelus_armatus
ENSPMGG00000006141	-	96	91.187	ENSMZEG00005006258	CPSF3	87	91.187	Maylandia_zebra
ENSPMGG00000006141	-	100	87.380	ENSMZEG00005014358	cpsf3	100	87.380	Maylandia_zebra
ENSPMGG00000006141	-	98	85.211	ENSMGAG00000013995	CPSF3	85	85.211	Meleagris_gallopavo
ENSPMGG00000006141	-	51	81.208	ENSMAUG00000000166	Cpsf3	79	81.208	Mesocricetus_auratus
ENSPMGG00000006141	-	92	83.829	ENSMICG00000002363	CPSF3	98	76.221	Microcebus_murinus
ENSPMGG00000006141	-	99	83.054	ENSMOCG00000020067	Cpsf3	91	83.054	Microtus_ochrogaster
ENSPMGG00000006141	-	98	82.055	ENSMMOG00000018212	CPSF3	95	82.055	Mola_mola
ENSPMGG00000006141	-	77	70.968	ENSMMOG00000011923	CPSF3	86	70.968	Mola_mola
ENSPMGG00000006141	-	93	88.909	ENSMODG00000014703	CPSF3	78	88.909	Monodelphis_domestica
ENSPMGG00000006141	-	96	85.059	ENSMALG00000011474	CPSF3	96	85.059	Monopterus_albus
ENSPMGG00000006141	-	100	87.739	ENSMALG00000016416	cpsf3	100	87.739	Monopterus_albus
ENSPMGG00000006141	-	95	87.138	MGP_CAROLIEiJ_G0017640	Cpsf3	80	87.138	Mus_caroli
ENSPMGG00000006141	-	95	87.138	ENSMUSG00000054309	Cpsf3	91	92.760	Mus_musculus
ENSPMGG00000006141	-	95	86.957	MGP_PahariEiJ_G0029397	Cpsf3	80	86.957	Mus_pahari
ENSPMGG00000006141	-	95	87.138	MGP_SPRETEiJ_G0018481	Cpsf3	80	87.138	Mus_spretus
ENSPMGG00000006141	-	99	85.340	ENSMPUG00000013213	CPSF3	83	85.340	Mustela_putorius_furo
ENSPMGG00000006141	-	99	85.017	ENSMLUG00000010636	CPSF3	83	85.017	Myotis_lucifugus
ENSPMGG00000006141	-	99	84.817	ENSNGAG00000019836	Cpsf3	83	84.817	Nannospalax_galili
ENSPMGG00000006141	-	100	86.901	ENSNBRG00000004770	cpsf3	100	86.901	Neolamprologus_brichardi
ENSPMGG00000006141	-	96	91.187	ENSNBRG00000010525	CPSF3	87	91.187	Neolamprologus_brichardi
ENSPMGG00000006141	-	99	85.340	ENSNLEG00000013359	CPSF3	80	94.203	Nomascus_leucogenys
ENSPMGG00000006141	-	95	58.152	ENSMEUG00000013117	-	80	58.152	Notamacropus_eugenii
ENSPMGG00000006141	-	93	78.189	ENSOPRG00000008902	CPSF3	79	78.189	Ochotona_princeps
ENSPMGG00000006141	-	99	85.515	ENSODEG00000003129	CPSF3	83	85.515	Octodon_degus
ENSPMGG00000006141	-	100	79.300	ENSONIG00000018812	cpsf3	91	85.440	Oreochromis_niloticus
ENSPMGG00000006141	-	83	88.017	ENSOANG00000008577	CPSF3	86	88.017	Ornithorhynchus_anatinus
ENSPMGG00000006141	-	99	85.340	ENSOCUG00000003728	CPSF3	83	85.340	Oryctolagus_cuniculus
ENSPMGG00000006141	-	99	84.320	ENSORLG00000018854	cpsf3	82	89.703	Oryzias_latipes
ENSPMGG00000006141	-	100	87.013	ENSORLG00020013331	cpsf3	100	87.013	Oryzias_latipes_hni
ENSPMGG00000006141	-	100	86.356	ENSORLG00015011017	cpsf3	100	86.356	Oryzias_latipes_hsok
ENSPMGG00000006141	-	99	84.320	ENSOMEG00000010647	cpsf3	87	84.320	Oryzias_melastigma
ENSPMGG00000006141	-	99	74.171	ENSOGAG00000001680	CPSF3	83	74.171	Otolemur_garnettii
ENSPMGG00000006141	-	99	85.340	ENSOARG00000015073	CPSF3	83	85.340	Ovis_aries
ENSPMGG00000006141	-	99	85.340	ENSPPAG00000042457	CPSF3	80	94.203	Pan_paniscus
ENSPMGG00000006141	-	95	87.500	ENSPPRG00000016790	CPSF3	87	85.340	Panthera_pardus
ENSPMGG00000006141	-	95	87.500	ENSPTIG00000003920	CPSF3	87	87.500	Panthera_tigris_altaica
ENSPMGG00000006141	-	99	85.340	ENSPTRG00000011638	CPSF3	80	94.203	Pan_troglodytes
ENSPMGG00000006141	-	99	85.340	ENSPANG00000016798	CPSF3	84	91.142	Papio_anubis
ENSPMGG00000006141	-	98	87.831	ENSPKIG00000023646	cpsf3	99	82.595	Paramormyrops_kingsleyae
ENSPMGG00000006141	-	94	88.235	ENSPSIG00000016144	CPSF3	79	88.235	Pelodiscus_sinensis
ENSPMGG00000006141	-	55	87.382	ENSPMGG00000015311	CPSF3	79	87.382	Periophthalmus_magnuspinnatus
ENSPMGG00000006141	-	95	87.319	ENSPEMG00000017668	Cpsf3	83	85.166	Peromyscus_maniculatus_bairdii
ENSPMGG00000006141	-	83	87.190	ENSPMAG00000004841	cpsf3	89	87.190	Petromyzon_marinus
ENSPMGG00000006141	-	95	87.681	ENSPCIG00000009823	CPSF3	82	87.681	Phascolarctos_cinereus
ENSPMGG00000006141	-	99	80.732	ENSPFOG00000010418	-	82	88.007	Poecilia_formosa
ENSPMGG00000006141	-	100	78.102	ENSPFOG00000015922	cpsf3	82	90.106	Poecilia_formosa
ENSPMGG00000006141	-	59	83.673	ENSPLAG00000021300	-	85	83.673	Poecilia_latipinna
ENSPMGG00000006141	-	94	85.691	ENSPLAG00000000882	cpsf3	82	90.106	Poecilia_latipinna
ENSPMGG00000006141	-	94	85.691	ENSPMEG00000018309	cpsf3	82	90.106	Poecilia_mexicana
ENSPMGG00000006141	-	100	85.327	ENSPREG00000014875	cpsf3	100	85.327	Poecilia_reticulata
ENSPMGG00000006141	-	99	74.387	ENSPREG00000004482	CPSF3	90	80.541	Poecilia_reticulata
ENSPMGG00000006141	-	99	80.454	ENSPPYG00000012666	CPSF3	82	80.454	Pongo_abelii
ENSPMGG00000006141	-	83	63.883	ENSPCAG00000015042	CPSF3	73	63.883	Procavia_capensis
ENSPMGG00000006141	-	86	79.832	ENSPCOG00000023016	CPSF3	90	79.832	Propithecus_coquereli
ENSPMGG00000006141	-	99	85.340	ENSPVAG00000005324	CPSF3	83	85.340	Pteropus_vampyrus
ENSPMGG00000006141	-	95	92.015	ENSPNYG00000021047	CPSF3	92	92.015	Pundamilia_nyererei
ENSPMGG00000006141	-	100	87.380	ENSPNYG00000004405	cpsf3	100	87.380	Pundamilia_nyererei
ENSPMGG00000006141	-	100	81.289	ENSPNAG00000023060	cpsf3	100	81.289	Pygocentrus_nattereri
ENSPMGG00000006141	-	95	87.138	ENSRNOG00000052418	Cpsf3	80	87.138	Rattus_norvegicus
ENSPMGG00000006141	-	99	81.326	ENSRBIG00000041615	CPSF3	87	81.326	Rhinopithecus_bieti
ENSPMGG00000006141	-	99	85.340	ENSRROG00000033792	CPSF3	83	85.340	Rhinopithecus_roxellana
ENSPMGG00000006141	-	94	41.413	YLR277C	YSH1	79	41.413	Saccharomyces_cerevisiae
ENSPMGG00000006141	-	99	81.152	ENSSBOG00000027263	CPSF3	82	81.152	Saimiri_boliviensis_boliviensis
ENSPMGG00000006141	-	95	87.681	ENSSHAG00000007024	CPSF3	80	87.681	Sarcophilus_harrisii
ENSPMGG00000006141	-	94	91.529	ENSSFOG00015002108	cpsf3	99	82.148	Scleropages_formosus
ENSPMGG00000006141	-	94	83.555	ENSSMAG00000020534	CPSF3	81	91.497	Scophthalmus_maximus
ENSPMGG00000006141	-	99	88.656	ENSSDUG00000018498	CPSF3	90	88.656	Seriola_dumerili
ENSPMGG00000006141	-	99	83.439	ENSSDUG00000002828	cpsf3	95	82.555	Seriola_dumerili
ENSPMGG00000006141	-	99	83.280	ENSSLDG00000005234	CPSF3	99	83.280	Seriola_lalandi_dorsalis
ENSPMGG00000006141	-	100	84.385	ENSSLDG00000008469	cpsf3	94	91.449	Seriola_lalandi_dorsalis
ENSPMGG00000006141	-	83	79.749	ENSSARG00000005186	CPSF3	70	79.749	Sorex_araneus
ENSPMGG00000006141	-	93	87.339	ENSSPUG00000015525	CPSF3	79	87.339	Sphenodon_punctatus
ENSPMGG00000006141	-	100	83.254	ENSSPAG00000002906	CPSF3	100	83.254	Stegastes_partitus
ENSPMGG00000006141	-	100	78.863	ENSSPAG00000018579	cpsf3	82	91.005	Stegastes_partitus
ENSPMGG00000006141	-	99	85.340	ENSSSCG00000020799	CPSF3	90	86.316	Sus_scrofa
ENSPMGG00000006141	-	98	85.387	ENSTGUG00000013016	CPSF3	83	85.387	Taeniopygia_guttata
ENSPMGG00000006141	-	60	68.101	ENSTRUG00000013905	CPSF3	83	77.477	Takifugu_rubripes
ENSPMGG00000006141	-	99	78.446	ENSTRUG00000007030	cpsf3	97	79.442	Takifugu_rubripes
ENSPMGG00000006141	-	81	86.817	ENSTBEG00000002707	CPSF3	76	86.817	Tupaia_belangeri
ENSPMGG00000006141	-	81	67.500	ENSTTRG00000000861	CPSF3	68	67.500	Tursiops_truncatus
ENSPMGG00000006141	-	99	85.340	ENSUAMG00000007535	CPSF3	81	85.340	Ursus_americanus
ENSPMGG00000006141	-	99	85.340	ENSUMAG00000003676	CPSF3	91	88.725	Ursus_maritimus
ENSPMGG00000006141	-	93	88.725	ENSVPAG00000008041	CPSF3	85	88.725	Vicugna_pacos
ENSPMGG00000006141	-	99	85.340	ENSVVUG00000002194	CPSF3	83	85.340	Vulpes_vulpes
ENSPMGG00000006141	-	95	86.182	ENSXETG00000008263	cpsf3	79	86.182	Xenopus_tropicalis
ENSPMGG00000006141	-	53	81.935	ENSXCOG00000000957	-	73	81.935	Xiphophorus_couchianus
ENSPMGG00000006141	-	100	77.745	ENSXCOG00000019695	cpsf3	82	90.283	Xiphophorus_couchianus
ENSPMGG00000006141	-	99	83.840	ENSXMAG00000009784	cpsf3	88	90.123	Xiphophorus_maculatus
ENSPMGG00000006141	-	99	81.051	ENSXMAG00000027291	CPSF3	82	88.183	Xiphophorus_maculatus