EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMGG00000012285 (Gene tree)
Gene ID: -
Gene Symbol: smn1
Alias: -
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Periophthalmus_magnuspinnatus
Status: putative
Strand: Plus strand
Length: 1904 bases
Position: chrKN466313.1:691164-693067
Accession: ZDB-GENE-990715-16
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMGP00000014993	TUDOR	PF00567.24	1.6e-05	1	1
ENSPMGP00000014996	TUDOR	PF00567.24	1.9e-05	1	1
ENSPMGP00000014996	SMN	PF06003.12	3.9e-100	1	1
ENSPMGP00000014993	SMN	PF06003.12	1.4e-99	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMGT00000015980	-	840	-	ENSPMGP00000014993	279 (aa)	-	-
ENSPMGT00000015983	-	810	-	ENSPMGP00000014996	269 (aa)	-	-

Gene Model

Click here to download ENSPMGG00000012285's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMGG00000012285's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMGG00000012285	smn1	95	50.187	ENSG00000205571	SMN2	80	70.270	Homo_sapiens
ENSPMGG00000012285	smn1	95	50.187	ENSG00000172062	SMN1	92	48.708	Homo_sapiens
ENSPMGG00000012285	smn1	97	69.065	ENSAPOG00000011324	smn1	100	70.979	Acanthochromis_polyacanthus
ENSPMGG00000012285	smn1	94	50.719	ENSAMEG00000003316	-	89	49.462	Ailuropoda_melanoleuca
ENSPMGG00000012285	smn1	61	76.364	ENSACIG00000007598	smn1	90	76.364	Amphilophus_citrinellus
ENSPMGG00000012285	smn1	96	70.943	ENSACIG00000019772	-	99	70.943	Amphilophus_citrinellus
ENSPMGG00000012285	smn1	100	67.007	ENSAOCG00000024444	smn1	100	72.378	Amphiprion_ocellaris
ENSPMGG00000012285	smn1	100	67.007	ENSAPEG00000016504	smn1	100	72.378	Amphiprion_percula
ENSPMGG00000012285	smn1	99	74.113	ENSATEG00000002182	smn1	83	77.091	Anabas_testudineus
ENSPMGG00000012285	smn1	66	44.211	ENSAPLG00000010912	-	96	44.330	Anas_platyrhynchos
ENSPMGG00000012285	smn1	98	50.355	ENSACAG00000010017	-	96	50.000	Anolis_carolinensis
ENSPMGG00000012285	smn1	77	44.749	ENSANAG00000032133	-	92	48.214	Aotus_nancymaae
ENSPMGG00000012285	smn1	97	75.472	ENSACLG00000007308	smn1	91	73.962	Astatotilapia_calliptera
ENSPMGG00000012285	smn1	99	56.071	ENSAMXG00000013884	smn1	99	58.042	Astyanax_mexicanus
ENSPMGG00000012285	smn1	94	50.368	ENSBTAG00000005743	SMN2	93	47.464	Bos_taurus
ENSPMGG00000012285	smn1	94	50.579	ENSCJAG00000016290	-	92	50.000	Callithrix_jacchus
ENSPMGG00000012285	smn1	94	49.621	ENSCAFG00000007812	SMN	93	49.458	Canis_familiaris
ENSPMGG00000012285	smn1	94	49.621	ENSCAFG00020019229	-	86	49.458	Canis_lupus_dingo
ENSPMGG00000012285	smn1	97	47.766	ENSCHIG00000015559	-	93	46.099	Capra_hircus
ENSPMGG00000012285	smn1	94	51.373	ENSTSYG00000012058	-	93	49.281	Carlito_syrichta
ENSPMGG00000012285	smn1	74	42.233	ENSCAPG00000011021	-	88	43.878	Cavia_aperea
ENSPMGG00000012285	smn1	94	48.872	ENSCPOG00000012328	-	93	46.570	Cavia_porcellus
ENSPMGG00000012285	smn1	94	49.810	ENSCPOG00000036973	-	92	47.331	Cavia_porcellus
ENSPMGG00000012285	smn1	94	50.193	ENSCCAG00000018127	-	91	50.000	Cebus_capucinus
ENSPMGG00000012285	smn1	95	50.562	ENSCATG00000037002	-	93	49.814	Cercocebus_atys
ENSPMGG00000012285	smn1	94	49.618	ENSCLAG00000000284	-	92	47.636	Chinchilla_lanigera
ENSPMGG00000012285	smn1	94	51.136	ENSCSAG00000015688	-	91	50.360	Chlorocebus_sabaeus
ENSPMGG00000012285	smn1	65	80.000	ENSCHOG00000007346	-	67	86.957	Choloepus_hoffmanni
ENSPMGG00000012285	smn1	96	49.813	ENSCPBG00000010968	-	97	51.908	Chrysemys_picta_bellii
ENSPMGG00000012285	smn1	97	45.390	ENSCANG00000033324	-	94	45.017	Colobus_angolensis_palliatus
ENSPMGG00000012285	smn1	95	51.321	ENSCANG00000038242	-	93	49.814	Colobus_angolensis_palliatus
ENSPMGG00000012285	smn1	97	37.676	ENSCGRG00001016998	-	97	37.676	Cricetulus_griseus_chok1gshd
ENSPMGG00000012285	smn1	94	48.276	ENSCGRG00001017959	-	93	45.583	Cricetulus_griseus_chok1gshd
ENSPMGG00000012285	smn1	94	48.276	ENSCGRG00000007698	Smn1	93	45.583	Cricetulus_griseus_crigri
ENSPMGG00000012285	smn1	99	63.509	ENSCSEG00000015227	smn1	99	62.807	Cynoglossus_semilaevis
ENSPMGG00000012285	smn1	97	67.500	ENSCVAG00000007498	smn1	100	66.899	Cyprinodon_variegatus
ENSPMGG00000012285	smn1	97	61.818	ENSDARG00000018494	smn1	100	59.233	Danio_rerio
ENSPMGG00000012285	smn1	53	54.795	ENSDNOG00000045949	-	63	51.333	Dasypus_novemcinctus
ENSPMGG00000012285	smn1	75	46.606	ENSDNOG00000007283	-	86	45.283	Dasypus_novemcinctus
ENSPMGG00000012285	smn1	94	42.366	ENSDORG00000007082	Smn1	91	43.396	Dipodomys_ordii
ENSPMGG00000012285	smn1	63	44.828	ENSETEG00000001406	-	83	44.318	Echinops_telfairi
ENSPMGG00000012285	smn1	97	40.357	ENSEBUG00000011902	smn1	96	37.113	Eptatretus_burgeri
ENSPMGG00000012285	smn1	91	46.094	ENSEASG00005018000	-	89	42.593	Equus_asinus_asinus
ENSPMGG00000012285	smn1	94	48.302	ENSECAG00000015215	-	93	46.154	Equus_caballus
ENSPMGG00000012285	smn1	91	47.082	ENSEEUG00000015777	-	100	47.490	Erinaceus_europaeus
ENSPMGG00000012285	smn1	97	65.779	ENSELUG00000018067	smn1	100	61.189	Esox_lucius
ENSPMGG00000012285	smn1	94	50.566	ENSFCAG00000028292	SMN	74	86.486	Felis_catus
ENSPMGG00000012285	smn1	91	51.200	ENSFALG00000012320	-	92	53.846	Ficedula_albicollis
ENSPMGG00000012285	smn1	94	46.388	ENSFDAG00000017683	-	92	46.619	Fukomys_damarensis
ENSPMGG00000012285	smn1	94	69.231	ENSFHEG00000018508	smn1	100	68.100	Fundulus_heteroclitus
ENSPMGG00000012285	smn1	97	65.517	ENSGMOG00000017279	smn1	98	59.516	Gadus_morhua
ENSPMGG00000012285	smn1	95	50.370	ENSGALG00000002430	SMN	97	49.035	Gallus_gallus
ENSPMGG00000012285	smn1	100	68.214	ENSGAFG00000009501	smn1	100	67.972	Gambusia_affinis
ENSPMGG00000012285	smn1	97	72.180	ENSGACG00000010584	smn1	97	67.742	Gasterosteus_aculeatus
ENSPMGG00000012285	smn1	96	49.810	ENSGAGG00000011374	-	95	52.000	Gopherus_agassizii
ENSPMGG00000012285	smn1	97	36.000	ENSGAGG00000013639	-	92	35.354	Gopherus_agassizii
ENSPMGG00000012285	smn1	58	58.025	ENSGGOG00000026704	-	74	55.488	Gorilla_gorilla
ENSPMGG00000012285	smn1	95	49.618	ENSGGOG00000003872	-	93	47.710	Gorilla_gorilla
ENSPMGG00000012285	smn1	97	73.063	ENSHBUG00000013987	smn1	100	71.025	Haplochromis_burtoni
ENSPMGG00000012285	smn1	94	48.473	ENSHGLG00000001018	-	92	46.619	Heterocephalus_glaber_female
ENSPMGG00000012285	smn1	94	44.074	ENSHGLG00000001905	-	94	45.185	Heterocephalus_glaber_female
ENSPMGG00000012285	smn1	94	48.473	ENSHGLG00100011252	-	92	46.619	Heterocephalus_glaber_male
ENSPMGG00000012285	smn1	94	44.074	ENSHGLG00100018676	-	96	45.076	Heterocephalus_glaber_male
ENSPMGG00000012285	smn1	99	66.312	ENSHCOG00000017136	smn1	91	69.853	Hippocampus_comes
ENSPMGG00000012285	smn1	97	57.914	ENSIPUG00000012580	smn1	88	57.244	Ictalurus_punctatus
ENSPMGG00000012285	smn1	94	49.615	ENSSTOG00000012288	-	93	47.794	Ictidomys_tridecemlineatus
ENSPMGG00000012285	smn1	54	47.945	ENSJJAG00000014853	-	77	47.134	Jaculus_jaculus
ENSPMGG00000012285	smn1	97	74.074	ENSKMAG00000007239	smn1	100	70.526	Kryptolebias_marmoratus
ENSPMGG00000012285	smn1	97	72.826	ENSLBEG00000022550	smn1	98	72.491	Labrus_bergylta
ENSPMGG00000012285	smn1	99	32.573	ENSLACG00000009808	-	95	35.430	Latimeria_chalumnae
ENSPMGG00000012285	smn1	100	53.901	ENSLOCG00000011339	smn1	100	53.659	Lepisosteus_oculatus
ENSPMGG00000012285	smn1	94	46.992	ENSLAFG00000003425	-	99	40.252	Loxodonta_africana
ENSPMGG00000012285	smn1	95	51.311	ENSMFAG00000031523	SMN1	95	48.352	Macaca_fascicularis
ENSPMGG00000012285	smn1	94	48.106	ENSMFAG00000008812	-	91	47.482	Macaca_fascicularis
ENSPMGG00000012285	smn1	94	47.727	ENSMMUG00000030594	-	91	46.931	Macaca_mulatta
ENSPMGG00000012285	smn1	95	51.311	ENSMMUG00000020214	SMN1	92	49.446	Macaca_mulatta
ENSPMGG00000012285	smn1	74	39.048	ENSMNEG00000036423	-	70	43.646	Macaca_nemestrina
ENSPMGG00000012285	smn1	97	50.000	ENSMNEG00000035094	-	92	49.446	Macaca_nemestrina
ENSPMGG00000012285	smn1	95	51.311	ENSMLEG00000041902	-	94	48.718	Mandrillus_leucophaeus
ENSPMGG00000012285	smn1	99	69.231	ENSMAMG00000011034	smn1	100	69.686	Mastacembelus_armatus
ENSPMGG00000012285	smn1	97	73.432	ENSMZEG00005013634	smn1	100	71.378	Maylandia_zebra
ENSPMGG00000012285	smn1	66	45.989	ENSMGAG00000008889	-	94	46.316	Meleagris_gallopavo
ENSPMGG00000012285	smn1	94	46.909	ENSMAUG00000010262	Smn1	93	45.230	Mesocricetus_auratus
ENSPMGG00000012285	smn1	79	42.194	ENSMICG00000034708	-	83	42.544	Microcebus_murinus
ENSPMGG00000012285	smn1	94	49.618	ENSMOCG00000017833	Smn1	93	47.653	Microtus_ochrogaster
ENSPMGG00000012285	smn1	99	66.426	ENSMMOG00000005504	smn1	97	67.537	Mola_mola
ENSPMGG00000012285	smn1	94	53.232	ENSMODG00000001436	-	93	49.821	Monodelphis_domestica
ENSPMGG00000012285	smn1	97	70.000	ENSMALG00000008025	smn1	100	71.429	Monopterus_albus
ENSPMGG00000012285	smn1	94	49.237	MGP_CAROLIEiJ_G0018836	Smn1	94	45.205	Mus_caroli
ENSPMGG00000012285	smn1	94	49.425	ENSMUSG00000021645	Smn1	93	45.775	Mus_musculus
ENSPMGG00000012285	smn1	94	47.015	MGP_PahariEiJ_G0015911	Smn1	93	45.035	Mus_pahari
ENSPMGG00000012285	smn1	94	49.042	MGP_SPRETEiJ_G0019718	Smn1	94	45.205	Mus_spretus
ENSPMGG00000012285	smn1	94	50.189	ENSMPUG00000014470	-	93	47.080	Mustela_putorius_furo
ENSPMGG00000012285	smn1	58	57.500	ENSMLUG00000010603	-	89	45.118	Myotis_lucifugus
ENSPMGG00000012285	smn1	94	50.000	ENSNGAG00000019833	Smn1	93	44.211	Nannospalax_galili
ENSPMGG00000012285	smn1	97	72.993	ENSNBRG00000023000	smn1	100	71.678	Neolamprologus_brichardi
ENSPMGG00000012285	smn1	97	49.265	ENSNLEG00000004454	-	93	48.352	Nomascus_leucogenys
ENSPMGG00000012285	smn1	67	52.083	ENSMEUG00000011393	-	88	48.485	Notamacropus_eugenii
ENSPMGG00000012285	smn1	91	49.416	ENSOPRG00000002015	-	100	50.000	Ochotona_princeps
ENSPMGG00000012285	smn1	97	48.175	ENSODEG00000015976	-	95	47.794	Octodon_degus
ENSPMGG00000012285	smn1	97	73.358	ENSONIG00000011799	smn1	100	72.028	Oreochromis_niloticus
ENSPMGG00000012285	smn1	95	44.912	ENSOANG00000001626	-	95	49.814	Ornithorhynchus_anatinus
ENSPMGG00000012285	smn1	94	50.000	ENSOCUG00000017097	-	92	50.923	Oryctolagus_cuniculus
ENSPMGG00000012285	smn1	94	49.811	ENSOCUG00000026649	-	92	50.365	Oryctolagus_cuniculus
ENSPMGG00000012285	smn1	67	46.632	ENSOCUG00000025183	-	78	46.789	Oryctolagus_cuniculus
ENSPMGG00000012285	smn1	97	70.956	ENSORLG00000010552	smn1	100	66.899	Oryzias_latipes
ENSPMGG00000012285	smn1	100	66.904	ENSORLG00020007936	smn1	100	64.931	Oryzias_latipes_hni
ENSPMGG00000012285	smn1	97	70.849	ENSORLG00015022425	smn1	100	66.202	Oryzias_latipes_hsok
ENSPMGG00000012285	smn1	97	70.522	ENSOMEG00000007824	smn1	100	66.551	Oryzias_melastigma
ENSPMGG00000012285	smn1	94	45.018	ENSOGAG00000031414	-	92	46.209	Otolemur_garnettii
ENSPMGG00000012285	smn1	94	50.000	ENSOARG00000005425	-	99	45.775	Ovis_aries
ENSPMGG00000012285	smn1	95	50.187	ENSPPAG00000036640	-	93	47.985	Pan_paniscus
ENSPMGG00000012285	smn1	94	50.379	ENSPPRG00000005575	-	74	86.486	Panthera_pardus
ENSPMGG00000012285	smn1	94	50.189	ENSPTIG00000007745	-	93	49.104	Panthera_tigris_altaica
ENSPMGG00000012285	smn1	95	49.630	ENSPTRG00000016955	-	92	48.175	Pan_troglodytes
ENSPMGG00000012285	smn1	97	50.000	ENSPANG00000013601	-	91	49.286	Papio_anubis
ENSPMGG00000012285	smn1	94	48.106	ENSPANG00000000253	-	91	48.201	Papio_anubis
ENSPMGG00000012285	smn1	100	55.088	ENSPKIG00000011096	smn1	100	55.872	Paramormyrops_kingsleyae
ENSPMGG00000012285	smn1	91	48.235	ENSPSIG00000014787	-	83	50.758	Pelodiscus_sinensis
ENSPMGG00000012285	smn1	91	38.039	ENSPMAG00000005004	smn1	92	36.861	Petromyzon_marinus
ENSPMGG00000012285	smn1	94	54.753	ENSPCIG00000025764	-	94	49.821	Phascolarctos_cinereus
ENSPMGG00000012285	smn1	97	68.214	ENSPFOG00000007786	smn1	100	66.899	Poecilia_formosa
ENSPMGG00000012285	smn1	100	67.857	ENSPLAG00000012071	smn1	100	67.616	Poecilia_latipinna
ENSPMGG00000012285	smn1	100	67.857	ENSPMEG00000017085	smn1	100	67.616	Poecilia_mexicana
ENSPMGG00000012285	smn1	100	67.500	ENSPREG00000005824	smn1	100	67.972	Poecilia_reticulata
ENSPMGG00000012285	smn1	54	46.980	ENSPPYG00000019189	-	74	43.046	Pongo_abelii
ENSPMGG00000012285	smn1	91	48.828	ENSPPYG00000015533	-	95	49.077	Pongo_abelii
ENSPMGG00000012285	smn1	91	47.778	ENSPCAG00000004187	-	98	46.494	Procavia_capensis
ENSPMGG00000012285	smn1	65	49.724	ENSPCOG00000022307	-	65	49.359	Propithecus_coquereli
ENSPMGG00000012285	smn1	94	51.331	ENSPVAG00000005977	-	92	48.070	Pteropus_vampyrus
ENSPMGG00000012285	smn1	97	72.993	ENSPNYG00000014148	smn1	100	71.678	Pundamilia_nyererei
ENSPMGG00000012285	smn1	99	58.219	ENSPNAG00000014007	smn1	87	60.211	Pygocentrus_nattereri
ENSPMGG00000012285	smn1	97	46.099	ENSRNOG00000018067	Smn1	95	44.483	Rattus_norvegicus
ENSPMGG00000012285	smn1	97	49.632	ENSRBIG00000037052	-	93	47.887	Rhinopithecus_bieti
ENSPMGG00000012285	smn1	97	47.101	ENSRBIG00000036775	-	93	44.718	Rhinopithecus_bieti
ENSPMGG00000012285	smn1	97	49.632	ENSRROG00000039399	-	92	49.446	Rhinopithecus_roxellana
ENSPMGG00000012285	smn1	95	45.833	ENSRROG00000031088	-	91	44.737	Rhinopithecus_roxellana
ENSPMGG00000012285	smn1	94	51.341	ENSSBOG00000011665	-	91	50.730	Saimiri_boliviensis_boliviensis
ENSPMGG00000012285	smn1	55	56.494	ENSSBOG00000020112	-	87	45.769	Saimiri_boliviensis_boliviensis
ENSPMGG00000012285	smn1	94	53.612	ENSSHAG00000001499	-	99	48.929	Sarcophilus_harrisii
ENSPMGG00000012285	smn1	97	58.647	ENSSFOG00015015507	smn1	100	55.282	Scleropages_formosus
ENSPMGG00000012285	smn1	100	61.953	ENSSMAG00000007922	smn1	100	68.182	Scophthalmus_maximus
ENSPMGG00000012285	smn1	97	72.143	ENSSDUG00000018533	smn1	100	75.261	Seriola_dumerili
ENSPMGG00000012285	smn1	97	72.500	ENSSLDG00000021135	smn1	100	75.610	Seriola_lalandi_dorsalis
ENSPMGG00000012285	smn1	96	54.307	ENSSPUG00000000373	-	96	52.878	Sphenodon_punctatus
ENSPMGG00000012285	smn1	100	70.463	ENSSPAG00000004345	smn1	100	72.727	Stegastes_partitus
ENSPMGG00000012285	smn1	94	37.405	ENSSSCG00000029127	-	85	66.667	Sus_scrofa
ENSPMGG00000012285	smn1	94	49.430	ENSSSCG00000016970	-	92	48.929	Sus_scrofa
ENSPMGG00000012285	smn1	96	43.972	ENSTGUG00000001548	-	97	46.909	Taeniopygia_guttata
ENSPMGG00000012285	smn1	100	58.099	ENSTRUG00000000736	smn	100	59.507	Takifugu_rubripes
ENSPMGG00000012285	smn1	97	61.111	ENSTNIG00000009892	smn1	100	59.375	Tetraodon_nigroviridis
ENSPMGG00000012285	smn1	58	57.764	ENSTBEG00000002399	-	76	52.071	Tupaia_belangeri
ENSPMGG00000012285	smn1	60	56.364	ENSTTRG00000005080	-	92	49.823	Tursiops_truncatus
ENSPMGG00000012285	smn1	58	58.750	ENSUAMG00000024947	-	57	54.938	Ursus_americanus
ENSPMGG00000012285	smn1	58	58.750	ENSUMAG00000007842	-	69	47.719	Ursus_maritimus
ENSPMGG00000012285	smn1	64	77.778	ENSVPAG00000009887	-	61	82.609	Vicugna_pacos
ENSPMGG00000012285	smn1	94	49.621	ENSVVUG00000006934	-	93	49.458	Vulpes_vulpes
ENSPMGG00000012285	smn1	52	58.621	ENSXETG00000004912	-	82	58.621	Xenopus_tropicalis
ENSPMGG00000012285	smn1	98	51.071	ENSXETG00000018189	smn2	94	48.780	Xenopus_tropicalis
ENSPMGG00000012285	smn1	100	67.138	ENSXMAG00000001521	smn1	100	66.431	Xiphophorus_maculatus