EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMGG00000012696 (Gene tree)
Gene ID: -
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Periophthalmus_magnuspinnatus
Status: putative
Strand: Minus strand
Length: 5709 bases
Position: chrKN467574.1:631913-637621
Accession: ZDB-GENE-060721-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMGP00000015494	Smg4_UPF3	PF03467.15	5.4e-52	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMGT00000016520	-	1452	-	ENSPMGP00000015494	483 (aa)	-	-

Gene Model

Click here to download ENSPMGG00000012696's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMGG00000012696's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMGG00000012696	upf3a	91	52.532	ENSG00000169062	UPF3A	95	53.066	Homo_sapiens
ENSPMGG00000012696	upf3a	100	83.918	ENSAPOG00000013484	upf3a	100	83.918	Acanthochromis_polyacanthus
ENSPMGG00000012696	upf3a	87	48.649	ENSACIG00000013582	upf3b	93	47.778	Amphilophus_citrinellus
ENSPMGG00000012696	upf3a	98	84.647	ENSACIG00000020468	upf3a	99	84.298	Amphilophus_citrinellus
ENSPMGG00000012696	upf3a	100	84.536	ENSAOCG00000020784	upf3a	100	84.536	Amphiprion_ocellaris
ENSPMGG00000012696	upf3a	57	60.900	ENSAOCG00000000706	upf3b	93	44.643	Amphiprion_ocellaris
ENSPMGG00000012696	upf3a	100	84.536	ENSAPEG00000003519	upf3a	100	84.536	Amphiprion_percula
ENSPMGG00000012696	upf3a	100	83.299	ENSATEG00000005843	upf3a	100	83.299	Anabas_testudineus
ENSPMGG00000012696	upf3a	88	60.948	ENSACAG00000001540	UPF3A	99	60.497	Anolis_carolinensis
ENSPMGG00000012696	upf3a	95	48.521	ENSANAG00000021713	UPF3A	99	49.304	Aotus_nancymaae
ENSPMGG00000012696	upf3a	100	84.189	ENSACLG00000026274	upf3a	100	84.189	Astatotilapia_calliptera
ENSPMGG00000012696	upf3a	98	76.681	ENSAMXG00000002608	upf3a	99	76.681	Astyanax_mexicanus
ENSPMGG00000012696	upf3a	90	52.288	ENSCJAG00000019102	UPF3A	97	51.235	Callithrix_jacchus
ENSPMGG00000012696	upf3a	75	53.034	ENSTSYG00000001918	UPF3A	98	53.034	Carlito_syrichta
ENSPMGG00000012696	upf3a	90	52.431	ENSCCAG00000018406	UPF3A	91	52.665	Cebus_capucinus
ENSPMGG00000012696	upf3a	95	53.074	ENSCATG00000029733	UPF3A	98	53.074	Cercocebus_atys
ENSPMGG00000012696	upf3a	95	52.846	ENSCSAG00000017388	UPF3A	98	52.008	Chlorocebus_sabaeus
ENSPMGG00000012696	upf3a	80	56.171	ENSCGRG00001017387	Upf3a	89	55.443	Cricetulus_griseus_chok1gshd
ENSPMGG00000012696	upf3a	80	56.171	ENSCGRG00000001468	Upf3a	89	55.443	Cricetulus_griseus_crigri
ENSPMGG00000012696	upf3a	99	82.365	ENSCSEG00000005106	upf3a	99	82.365	Cynoglossus_semilaevis
ENSPMGG00000012696	upf3a	82	54.157	ENSCSEG00000002046	upf3b	86	45.497	Cynoglossus_semilaevis
ENSPMGG00000012696	upf3a	100	79.794	ENSCVAG00000022333	upf3a	100	79.794	Cyprinodon_variegatus
ENSPMGG00000012696	upf3a	98	76.471	ENSDARG00000069297	upf3a	99	76.471	Danio_rerio
ENSPMGG00000012696	upf3a	81	57.656	ENSDNOG00000034391	UPF3A	93	57.416	Dasypus_novemcinctus
ENSPMGG00000012696	upf3a	85	51.300	ENSETEG00000010110	UPF3A	96	48.654	Echinops_telfairi
ENSPMGG00000012696	upf3a	99	76.434	ENSELUG00000011050	upf3a	100	76.434	Esox_lucius
ENSPMGG00000012696	upf3a	93	52.282	ENSFCAG00000014602	UPF3A	96	52.282	Felis_catus
ENSPMGG00000012696	upf3a	100	80.206	ENSGAFG00000021170	upf3a	100	80.206	Gambusia_affinis
ENSPMGG00000012696	upf3a	81	50.365	ENSGACG00000017435	upf3b	60	71.779	Gasterosteus_aculeatus
ENSPMGG00000012696	upf3a	66	79.688	ENSGACG00000001972	upf3a	99	79.688	Gasterosteus_aculeatus
ENSPMGG00000012696	upf3a	91	52.473	ENSGGOG00000015428	UPF3A	95	53.066	Gorilla_gorilla
ENSPMGG00000012696	upf3a	90	42.694	ENSGGOG00000043074	-	80	43.099	Gorilla_gorilla
ENSPMGG00000012696	upf3a	100	83.299	ENSHBUG00000011325	upf3a	99	83.471	Haplochromis_burtoni
ENSPMGG00000012696	upf3a	76	53.806	ENSHGLG00000001544	UPF3A	50	63.507	Heterocephalus_glaber_female
ENSPMGG00000012696	upf3a	76	53.806	ENSHGLG00100013244	UPF3A	50	63.507	Heterocephalus_glaber_male
ENSPMGG00000012696	upf3a	95	76.293	ENSHCOG00000013985	upf3a	95	76.293	Hippocampus_comes
ENSPMGG00000012696	upf3a	98	77.311	ENSIPUG00000023450	upf3a	99	77.311	Ictalurus_punctatus
ENSPMGG00000012696	upf3a	100	82.062	ENSKMAG00000004381	upf3a	100	82.062	Kryptolebias_marmoratus
ENSPMGG00000012696	upf3a	98	78.407	ENSLBEG00000021570	upf3a	100	77.662	Labrus_bergylta
ENSPMGG00000012696	upf3a	67	38.265	ENSLACG00000006645	UPF3A	74	89.286	Latimeria_chalumnae
ENSPMGG00000012696	upf3a	97	70.886	ENSLOCG00000002665	upf3a	98	70.886	Lepisosteus_oculatus
ENSPMGG00000012696	upf3a	95	52.058	ENSMFAG00000045016	UPF3A	98	51.452	Macaca_fascicularis
ENSPMGG00000012696	upf3a	90	54.286	ENSMMUG00000007449	UPF3A	98	51.935	Macaca_mulatta
ENSPMGG00000012696	upf3a	86	56.905	ENSMNEG00000036402	UPF3A	82	56.905	Macaca_nemestrina
ENSPMGG00000012696	upf3a	86	56.190	ENSMLEG00000014726	UPF3A	93	56.667	Mandrillus_leucophaeus
ENSPMGG00000012696	upf3a	100	84.330	ENSMAMG00000018364	upf3a	100	84.330	Mastacembelus_armatus
ENSPMGG00000012696	upf3a	100	84.189	ENSMZEG00005021571	upf3a	100	84.189	Maylandia_zebra
ENSPMGG00000012696	upf3a	83	61.631	ENSMGAG00000014837	UPF3A	99	60.698	Meleagris_gallopavo
ENSPMGG00000012696	upf3a	53	70.428	ENSMOCG00000000550	Upf3a	59	66.986	Microtus_ochrogaster
ENSPMGG00000012696	upf3a	100	82.752	ENSMMOG00000019751	upf3a	100	82.716	Mola_mola
ENSPMGG00000012696	upf3a	88	62.385	ENSMODG00000003159	UPF3A	96	62.385	Monodelphis_domestica
ENSPMGG00000012696	upf3a	82	57.282	ENSMLUG00000015905	UPF3A	92	56.311	Myotis_lucifugus
ENSPMGG00000012696	upf3a	100	83.093	ENSNBRG00000000828	upf3a	100	83.093	Neolamprologus_brichardi
ENSPMGG00000012696	upf3a	91	53.004	ENSNLEG00000007563	UPF3A	95	53.165	Nomascus_leucogenys
ENSPMGG00000012696	upf3a	100	83.573	ENSONIG00000006817	upf3a	100	83.573	Oreochromis_niloticus
ENSPMGG00000012696	upf3a	75	55.228	ENSOANG00000006985	-	95	55.228	Ornithorhynchus_anatinus
ENSPMGG00000012696	upf3a	100	79.794	ENSORLG00000010911	upf3a	100	79.794	Oryzias_latipes
ENSPMGG00000012696	upf3a	83	41.844	ENSORLG00020003758	upf3b	51	68.919	Oryzias_latipes_hni
ENSPMGG00000012696	upf3a	100	77.938	ENSORLG00020014317	upf3a	100	77.938	Oryzias_latipes_hni
ENSPMGG00000012696	upf3a	100	78.557	ENSORLG00015017339	upf3a	58	78.557	Oryzias_latipes_hsok
ENSPMGG00000012696	upf3a	100	80.412	ENSOMEG00000014425	upf3a	100	80.412	Oryzias_melastigma
ENSPMGG00000012696	upf3a	85	54.353	ENSOARG00000009004	UPF3A	84	54.353	Ovis_aries
ENSPMGG00000012696	upf3a	89	52.967	ENSPPAG00000042267	UPF3A	91	53.744	Pan_paniscus
ENSPMGG00000012696	upf3a	93	52.075	ENSPPRG00000025062	UPF3A	96	52.075	Panthera_pardus
ENSPMGG00000012696	upf3a	82	45.592	ENSPTRG00000041187	-	86	40.786	Pan_troglodytes
ENSPMGG00000012696	upf3a	82	41.872	ENSPTRG00000051640	-	85	40.146	Pan_troglodytes
ENSPMGG00000012696	upf3a	91	51.899	ENSPTRG00000006073	UPF3A	95	52.643	Pan_troglodytes
ENSPMGG00000012696	upf3a	95	53.689	ENSPANG00000004346	UPF3A	99	52.000	Papio_anubis
ENSPMGG00000012696	upf3a	89	50.000	ENSPKIG00000019226	upf3b	86	66.667	Paramormyrops_kingsleyae
ENSPMGG00000012696	upf3a	93	70.753	ENSPKIG00000004422	upf3a	100	67.083	Paramormyrops_kingsleyae
ENSPMGG00000012696	upf3a	84	63.702	ENSPSIG00000007468	UPF3A	96	63.397	Pelodiscus_sinensis
ENSPMGG00000012696	upf3a	73	68.722	ENSPCIG00000019590	-	90	66.990	Phascolarctos_cinereus
ENSPMGG00000012696	upf3a	100	80.619	ENSPFOG00000013222	upf3a	100	80.619	Poecilia_formosa
ENSPMGG00000012696	upf3a	99	80.126	ENSPLAG00000011960	upf3a	100	80.126	Poecilia_latipinna
ENSPMGG00000012696	upf3a	100	82.004	ENSPMEG00000000836	upf3a	100	82.004	Poecilia_mexicana
ENSPMGG00000012696	upf3a	91	52.854	ENSPPYG00000005536	UPF3A	95	52.854	Pongo_abelii
ENSPMGG00000012696	upf3a	83	55.340	ENSPVAG00000005656	UPF3A	88	52.941	Pteropus_vampyrus
ENSPMGG00000012696	upf3a	100	84.189	ENSPNYG00000011289	upf3a	100	84.189	Pundamilia_nyererei
ENSPMGG00000012696	upf3a	84	51.481	ENSPNAG00000021528	upf3b	54	73.620	Pygocentrus_nattereri
ENSPMGG00000012696	upf3a	99	76.763	ENSPNAG00000019532	upf3a	100	76.763	Pygocentrus_nattereri
ENSPMGG00000012696	upf3a	88	55.814	ENSRBIG00000034007	UPF3A	92	55.300	Rhinopithecus_bieti
ENSPMGG00000012696	upf3a	85	56.802	ENSRROG00000012212	UPF3A	84	56.802	Rhinopithecus_roxellana
ENSPMGG00000012696	upf3a	76	53.018	ENSSBOG00000029989	UPF3A	99	45.859	Saimiri_boliviensis_boliviensis
ENSPMGG00000012696	upf3a	85	63.121	ENSSHAG00000009895	UPF3A	99	61.905	Sarcophilus_harrisii
ENSPMGG00000012696	upf3a	98	67.296	ENSSFOG00015021851	upf3a	99	64.496	Scleropages_formosus
ENSPMGG00000012696	upf3a	100	79.839	ENSSMAG00000003858	upf3a	100	81.048	Scophthalmus_maximus
ENSPMGG00000012696	upf3a	83	52.235	ENSSMAG00000012913	upf3b	53	73.620	Scophthalmus_maximus
ENSPMGG00000012696	upf3a	100	85.773	ENSSDUG00000009680	upf3a	100	85.773	Seriola_dumerili
ENSPMGG00000012696	upf3a	100	84.124	ENSSLDG00000009700	upf3a	100	84.124	Seriola_lalandi_dorsalis
ENSPMGG00000012696	upf3a	100	84.189	ENSSPAG00000007938	upf3a	100	84.189	Stegastes_partitus
ENSPMGG00000012696	upf3a	82	53.659	ENSSSCG00000024679	UPF3A	78	54.369	Sus_scrofa
ENSPMGG00000012696	upf3a	84	63.636	ENSTGUG00000009493	UPF3A	100	63.636	Taeniopygia_guttata
ENSPMGG00000012696	upf3a	100	78.675	ENSTRUG00000012730	upf3a	100	78.675	Takifugu_rubripes
ENSPMGG00000012696	upf3a	84	72.289	ENSTNIG00000014973	upf3a	100	71.807	Tetraodon_nigroviridis
ENSPMGG00000012696	upf3a	73	51.872	ENSTTRG00000015414	UPF3A	78	48.905	Tursiops_truncatus
ENSPMGG00000012696	upf3a	81	55.528	ENSVPAG00000003525	UPF3A	94	55.528	Vicugna_pacos
ENSPMGG00000012696	upf3a	83	44.869	ENSXETG00000007440	upf3b	71	71.166	Xenopus_tropicalis
ENSPMGG00000012696	upf3a	91	53.571	ENSXETG00000002572	upf3a	100	53.795	Xenopus_tropicalis
ENSPMGG00000012696	upf3a	100	80.619	ENSXMAG00000013452	upf3a	100	80.619	Xiphophorus_maculatus