EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMGG00000015651 (Gene tree)
Gene ID: -
Gene Symbol: smndc1
Alias: -
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Periophthalmus_magnuspinnatus
Status: putative
Strand: Plus strand
Length: 1714 bases
Position: chrKN462170.1:412953-414666
Accession: ZDB-GENE-030131-614
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMGP00000019265	TUDOR	PF00567.24	1.8e-06	1	1
ENSPMGP00000019265	SMN	PF06003.12	7.8e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMGT00000020539	-	705	-	ENSPMGP00000019265	234 (aa)	-	-

Gene Model

Click here to download ENSPMGG00000015651's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMGG00000015651's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMGG00000015651	smndc1	100	73.950	ENSG00000119953	SMNDC1	100	73.950	Homo_sapiens
ENSPMGG00000015651	smndc1	100	82.773	ENSAPOG00000021772	smndc1	100	82.773	Acanthochromis_polyacanthus
ENSPMGG00000015651	smndc1	100	73.529	ENSAMEG00000005251	SMNDC1	100	73.529	Ailuropoda_melanoleuca
ENSPMGG00000015651	smndc1	100	83.193	ENSACIG00000004819	smndc1	100	83.193	Amphilophus_citrinellus
ENSPMGG00000015651	smndc1	100	81.933	ENSAOCG00000017869	smndc1	100	81.933	Amphiprion_ocellaris
ENSPMGG00000015651	smndc1	100	81.933	ENSAPEG00000007752	smndc1	100	81.933	Amphiprion_percula
ENSPMGG00000015651	smndc1	100	84.034	ENSATEG00000006830	smndc1	100	84.034	Anabas_testudineus
ENSPMGG00000015651	smndc1	83	73.232	ENSAPLG00000004322	SMNDC1	100	73.737	Anas_platyrhynchos
ENSPMGG00000015651	smndc1	100	73.109	ENSACAG00000005983	SMNDC1	100	73.950	Anolis_carolinensis
ENSPMGG00000015651	smndc1	100	73.529	ENSANAG00000032875	SMNDC1	100	73.529	Aotus_nancymaae
ENSPMGG00000015651	smndc1	100	81.933	ENSACLG00000016360	smndc1	100	81.933	Astatotilapia_calliptera
ENSPMGG00000015651	smndc1	100	79.747	ENSAMXG00000020310	smndc1	100	79.747	Astyanax_mexicanus
ENSPMGG00000015651	smndc1	100	73.950	ENSBTAG00000000551	SMNDC1	100	73.950	Bos_taurus
ENSPMGG00000015651	smndc1	100	73.529	ENSCJAG00000018624	SMNDC1	100	73.529	Callithrix_jacchus
ENSPMGG00000015651	smndc1	100	73.529	ENSCAFG00000010720	SMNDC1	100	73.529	Canis_familiaris
ENSPMGG00000015651	smndc1	100	73.529	ENSCAFG00020011913	SMNDC1	100	73.529	Canis_lupus_dingo
ENSPMGG00000015651	smndc1	100	73.950	ENSCHIG00000010604	SMNDC1	100	73.950	Capra_hircus
ENSPMGG00000015651	smndc1	100	73.529	ENSTSYG00000026454	SMNDC1	100	73.529	Carlito_syrichta
ENSPMGG00000015651	smndc1	84	69.652	ENSCAPG00000009132	SMNDC1	100	69.652	Cavia_aperea
ENSPMGG00000015651	smndc1	100	73.529	ENSCPOG00000031666	SMNDC1	100	73.529	Cavia_porcellus
ENSPMGG00000015651	smndc1	100	73.529	ENSCCAG00000021793	SMNDC1	100	73.529	Cebus_capucinus
ENSPMGG00000015651	smndc1	100	73.109	ENSCATG00000035910	SMNDC1	100	73.109	Cercocebus_atys
ENSPMGG00000015651	smndc1	100	73.529	ENSCLAG00000002838	SMNDC1	100	73.529	Chinchilla_lanigera
ENSPMGG00000015651	smndc1	100	73.529	ENSCSAG00000005169	SMNDC1	100	73.529	Chlorocebus_sabaeus
ENSPMGG00000015651	smndc1	81	68.394	ENSCHOG00000002936	SMNDC1	100	68.394	Choloepus_hoffmanni
ENSPMGG00000015651	smndc1	100	73.950	ENSCPBG00000012837	SMNDC1	100	73.529	Chrysemys_picta_bellii
ENSPMGG00000015651	smndc1	100	73.529	ENSCANG00000031720	-	100	73.529	Colobus_angolensis_palliatus
ENSPMGG00000015651	smndc1	100	58.898	ENSCANG00000036994	-	100	58.898	Colobus_angolensis_palliatus
ENSPMGG00000015651	smndc1	100	67.500	ENSCANG00000034620	-	100	67.500	Colobus_angolensis_palliatus
ENSPMGG00000015651	smndc1	100	73.109	ENSCGRG00001012973	Smndc1	100	73.109	Cricetulus_griseus_chok1gshd
ENSPMGG00000015651	smndc1	100	73.109	ENSCGRG00000012396	Smndc1	100	73.109	Cricetulus_griseus_crigri
ENSPMGG00000015651	smndc1	100	81.780	ENSCSEG00000015621	smndc1	100	81.780	Cynoglossus_semilaevis
ENSPMGG00000015651	smndc1	100	79.832	ENSCVAG00000020432	smndc1	100	80.252	Cyprinodon_variegatus
ENSPMGG00000015651	smndc1	100	77.215	ENSDARG00000056235	smndc1	100	77.215	Danio_rerio
ENSPMGG00000015651	smndc1	100	73.529	ENSDNOG00000016387	SMNDC1	83	73.529	Dasypus_novemcinctus
ENSPMGG00000015651	smndc1	100	73.529	ENSDORG00000023715	Smndc1	100	73.529	Dipodomys_ordii
ENSPMGG00000015651	smndc1	95	40.891	FBgn0039977	CG17454	98	42.105	Drosophila_melanogaster
ENSPMGG00000015651	smndc1	100	65.145	ENSEBUG00000010929	smndc1	100	65.574	Eptatretus_burgeri
ENSPMGG00000015651	smndc1	100	73.529	ENSEASG00005014930	SMNDC1	100	73.529	Equus_asinus_asinus
ENSPMGG00000015651	smndc1	100	73.529	ENSECAG00000029973	SMNDC1	100	73.529	Equus_caballus
ENSPMGG00000015651	smndc1	60	83.333	ENSEEUG00000013407	-	100	52.020	Erinaceus_europaeus
ENSPMGG00000015651	smndc1	100	80.085	ENSELUG00000000227	smndc1	100	80.085	Esox_lucius
ENSPMGG00000015651	smndc1	100	73.529	ENSFCAG00000027353	SMNDC1	100	73.529	Felis_catus
ENSPMGG00000015651	smndc1	100	73.950	ENSFALG00000002306	SMNDC1	100	74.370	Ficedula_albicollis
ENSPMGG00000015651	smndc1	100	73.950	ENSFDAG00000006468	SMNDC1	100	73.950	Fukomys_damarensis
ENSPMGG00000015651	smndc1	100	82.773	ENSFHEG00000020150	smndc1	100	82.773	Fundulus_heteroclitus
ENSPMGG00000015651	smndc1	100	78.814	ENSGMOG00000016585	smndc1	100	79.661	Gadus_morhua
ENSPMGG00000015651	smndc1	100	73.950	ENSGALG00000008561	SMNDC1	100	74.370	Gallus_gallus
ENSPMGG00000015651	smndc1	100	81.933	ENSGAFG00000011582	smndc1	100	81.933	Gambusia_affinis
ENSPMGG00000015651	smndc1	100	82.353	ENSGACG00000009468	smndc1	100	82.353	Gasterosteus_aculeatus
ENSPMGG00000015651	smndc1	100	73.950	ENSGAGG00000024547	SMNDC1	100	73.529	Gopherus_agassizii
ENSPMGG00000015651	smndc1	100	73.529	ENSGGOG00000010071	SMNDC1	100	73.529	Gorilla_gorilla
ENSPMGG00000015651	smndc1	100	81.933	ENSHBUG00000017596	smndc1	100	81.933	Haplochromis_burtoni
ENSPMGG00000015651	smndc1	100	73.950	ENSHGLG00000013390	-	100	73.950	Heterocephalus_glaber_female
ENSPMGG00000015651	smndc1	100	55.000	ENSHGLG00000001157	-	100	53.750	Heterocephalus_glaber_female
ENSPMGG00000015651	smndc1	100	73.950	ENSHGLG00100004814	-	100	73.950	Heterocephalus_glaber_male
ENSPMGG00000015651	smndc1	100	60.996	ENSHGLG00100004278	-	100	58.607	Heterocephalus_glaber_male
ENSPMGG00000015651	smndc1	100	79.498	ENSHCOG00000000783	smndc1	100	79.498	Hippocampus_comes
ENSPMGG00000015651	smndc1	100	79.325	ENSIPUG00000004217	smndc1	100	79.325	Ictalurus_punctatus
ENSPMGG00000015651	smndc1	100	73.529	ENSSTOG00000006088	SMNDC1	100	73.529	Ictidomys_tridecemlineatus
ENSPMGG00000015651	smndc1	100	73.859	ENSJJAG00000019974	Smndc1	100	73.859	Jaculus_jaculus
ENSPMGG00000015651	smndc1	100	80.672	ENSKMAG00000020134	smndc1	100	81.092	Kryptolebias_marmoratus
ENSPMGG00000015651	smndc1	100	80.591	ENSLBEG00000004598	smndc1	100	80.591	Labrus_bergylta
ENSPMGG00000015651	smndc1	100	75.210	ENSLACG00000007784	SMNDC1	100	75.210	Latimeria_chalumnae
ENSPMGG00000015651	smndc1	100	77.637	ENSLOCG00000012355	smndc1	100	77.637	Lepisosteus_oculatus
ENSPMGG00000015651	smndc1	100	73.109	ENSLAFG00000014353	SMNDC1	100	73.109	Loxodonta_africana
ENSPMGG00000015651	smndc1	100	63.675	ENSMFAG00000038381	-	100	63.675	Macaca_fascicularis
ENSPMGG00000015651	smndc1	100	73.529	ENSMFAG00000002433	-	100	73.529	Macaca_fascicularis
ENSPMGG00000015651	smndc1	100	63.675	ENSMMUG00000045875	-	100	63.675	Macaca_mulatta
ENSPMGG00000015651	smndc1	100	73.529	ENSMMUG00000007775	SMNDC1	100	73.529	Macaca_mulatta
ENSPMGG00000015651	smndc1	100	65.966	ENSMNEG00000033853	-	100	65.966	Macaca_nemestrina
ENSPMGG00000015651	smndc1	100	73.529	ENSMNEG00000042963	-	100	73.529	Macaca_nemestrina
ENSPMGG00000015651	smndc1	100	68.776	ENSMLEG00000040236	SMNDC1	100	68.354	Mandrillus_leucophaeus
ENSPMGG00000015651	smndc1	89	79.343	ENSMAMG00000018233	smndc1	87	79.343	Mastacembelus_armatus
ENSPMGG00000015651	smndc1	100	81.933	ENSMZEG00005027510	smndc1	100	81.933	Maylandia_zebra
ENSPMGG00000015651	smndc1	91	70.833	ENSMGAG00000010777	SMNDC1	91	70.370	Meleagris_gallopavo
ENSPMGG00000015651	smndc1	99	59.149	ENSMAUG00000005459	-	93	60.084	Mesocricetus_auratus
ENSPMGG00000015651	smndc1	100	73.529	ENSMAUG00000012243	-	100	73.529	Mesocricetus_auratus
ENSPMGG00000015651	smndc1	100	64.557	ENSMICG00000031640	-	100	64.557	Microcebus_murinus
ENSPMGG00000015651	smndc1	100	73.109	ENSMICG00000027336	-	100	73.109	Microcebus_murinus
ENSPMGG00000015651	smndc1	100	73.109	ENSMOCG00000002458	Smndc1	100	73.109	Microtus_ochrogaster
ENSPMGG00000015651	smndc1	100	82.353	ENSMMOG00000008856	smndc1	100	82.353	Mola_mola
ENSPMGG00000015651	smndc1	100	73.950	ENSMODG00000010542	SMNDC1	100	73.950	Monodelphis_domestica
ENSPMGG00000015651	smndc1	100	79.412	ENSMALG00000017598	smndc1	100	79.412	Monopterus_albus
ENSPMGG00000015651	smndc1	100	73.529	MGP_CAROLIEiJ_G0023072	Smndc1	100	73.529	Mus_caroli
ENSPMGG00000015651	smndc1	100	73.529	ENSMUSG00000025024	Smndc1	100	73.529	Mus_musculus
ENSPMGG00000015651	smndc1	100	73.529	MGP_PahariEiJ_G0014560	Smndc1	100	73.529	Mus_pahari
ENSPMGG00000015651	smndc1	100	73.529	MGP_SPRETEiJ_G0023993	Smndc1	100	73.529	Mus_spretus
ENSPMGG00000015651	smndc1	100	73.529	ENSMPUG00000002089	SMNDC1	100	73.529	Mustela_putorius_furo
ENSPMGG00000015651	smndc1	100	73.529	ENSMLUG00000016007	SMNDC1	100	73.529	Myotis_lucifugus
ENSPMGG00000015651	smndc1	100	73.222	ENSNGAG00000006833	Smndc1	100	73.222	Nannospalax_galili
ENSPMGG00000015651	smndc1	100	82.353	ENSNBRG00000017089	smndc1	100	82.353	Neolamprologus_brichardi
ENSPMGG00000015651	smndc1	100	73.529	ENSNLEG00000015471	SMNDC1	100	73.529	Nomascus_leucogenys
ENSPMGG00000015651	smndc1	70	61.585	ENSMEUG00000010120	-	98	56.122	Notamacropus_eugenii
ENSPMGG00000015651	smndc1	100	73.529	ENSOPRG00000015348	SMNDC1	100	73.529	Ochotona_princeps
ENSPMGG00000015651	smndc1	100	54.237	ENSODEG00000007594	-	100	52.119	Octodon_degus
ENSPMGG00000015651	smndc1	100	82.353	ENSONIG00000000434	smndc1	100	82.353	Oreochromis_niloticus
ENSPMGG00000015651	smndc1	100	73.859	ENSOANG00000001598	SMNDC1	100	73.859	Ornithorhynchus_anatinus
ENSPMGG00000015651	smndc1	100	73.529	ENSOCUG00000008145	-	100	73.529	Oryctolagus_cuniculus
ENSPMGG00000015651	smndc1	100	58.298	ENSOCUG00000012274	-	100	58.298	Oryctolagus_cuniculus
ENSPMGG00000015651	smndc1	100	81.092	ENSORLG00000005934	smndc1	95	81.513	Oryzias_latipes
ENSPMGG00000015651	smndc1	100	81.092	ENSORLG00020008796	smndc1	95	81.513	Oryzias_latipes_hni
ENSPMGG00000015651	smndc1	100	81.092	ENSORLG00015013666	smndc1	100	81.513	Oryzias_latipes_hsok
ENSPMGG00000015651	smndc1	100	78.903	ENSOMEG00000007590	smndc1	100	78.903	Oryzias_melastigma
ENSPMGG00000015651	smndc1	100	73.950	ENSOGAG00000000571	SMNDC1	100	73.950	Otolemur_garnettii
ENSPMGG00000015651	smndc1	100	73.950	ENSOARG00000009500	SMNDC1	100	73.950	Ovis_aries
ENSPMGG00000015651	smndc1	100	73.529	ENSPPAG00000027815	SMNDC1	100	73.529	Pan_paniscus
ENSPMGG00000015651	smndc1	100	73.529	ENSPPRG00000013749	SMNDC1	100	73.529	Panthera_pardus
ENSPMGG00000015651	smndc1	100	73.529	ENSPTIG00000011451	SMNDC1	100	73.529	Panthera_tigris_altaica
ENSPMGG00000015651	smndc1	100	73.529	ENSPTRG00000002937	SMNDC1	100	73.529	Pan_troglodytes
ENSPMGG00000015651	smndc1	100	70.763	ENSPANG00000031346	-	100	70.763	Papio_anubis
ENSPMGG00000015651	smndc1	100	73.529	ENSPANG00000020805	-	100	73.529	Papio_anubis
ENSPMGG00000015651	smndc1	100	78.059	ENSPKIG00000017164	smndc1	100	78.059	Paramormyrops_kingsleyae
ENSPMGG00000015651	smndc1	100	74.370	ENSPSIG00000012257	SMNDC1	100	73.950	Pelodiscus_sinensis
ENSPMGG00000015651	smndc1	100	73.529	ENSPEMG00000022058	Smndc1	100	73.529	Peromyscus_maniculatus_bairdii
ENSPMGG00000015651	smndc1	100	64.315	ENSPMAG00000007705	smndc1	100	64.315	Petromyzon_marinus
ENSPMGG00000015651	smndc1	95	58.744	ENSPCIG00000009693	-	98	58.744	Phascolarctos_cinereus
ENSPMGG00000015651	smndc1	100	73.950	ENSPCIG00000018419	SMNDC1	100	73.950	Phascolarctos_cinereus
ENSPMGG00000015651	smndc1	100	81.933	ENSPFOG00000017113	smndc1	100	81.933	Poecilia_formosa
ENSPMGG00000015651	smndc1	100	81.513	ENSPLAG00000010372	smndc1	100	81.513	Poecilia_latipinna
ENSPMGG00000015651	smndc1	100	81.933	ENSPMEG00000012288	smndc1	100	81.933	Poecilia_mexicana
ENSPMGG00000015651	smndc1	100	81.933	ENSPREG00000012279	smndc1	100	81.933	Poecilia_reticulata
ENSPMGG00000015651	smndc1	100	73.529	ENSPPYG00000002643	SMNDC1	100	73.529	Pongo_abelii
ENSPMGG00000015651	smndc1	81	67.876	ENSPCAG00000016183	SMNDC1	100	67.876	Procavia_capensis
ENSPMGG00000015651	smndc1	100	73.109	ENSPCOG00000024343	SMNDC1	100	73.109	Propithecus_coquereli
ENSPMGG00000015651	smndc1	77	86.458	ENSPVAG00000004368	SMNDC1	100	57.983	Pteropus_vampyrus
ENSPMGG00000015651	smndc1	83	80.303	ENSPNYG00000024093	smndc1	86	80.303	Pundamilia_nyererei
ENSPMGG00000015651	smndc1	100	78.481	ENSPNAG00000025285	smndc1	100	78.481	Pygocentrus_nattereri
ENSPMGG00000015651	smndc1	100	73.529	ENSRNOG00000014833	Smndc1	100	73.529	Rattus_norvegicus
ENSPMGG00000015651	smndc1	100	61.441	ENSRBIG00000032452	-	100	61.441	Rhinopithecus_bieti
ENSPMGG00000015651	smndc1	100	73.109	ENSRBIG00000000224	-	100	73.109	Rhinopithecus_bieti
ENSPMGG00000015651	smndc1	100	61.441	ENSRROG00000039125	-	100	61.441	Rhinopithecus_roxellana
ENSPMGG00000015651	smndc1	100	73.529	ENSRROG00000044992	-	100	73.529	Rhinopithecus_roxellana
ENSPMGG00000015651	smndc1	100	73.529	ENSSBOG00000026789	SMNDC1	100	73.529	Saimiri_boliviensis_boliviensis
ENSPMGG00000015651	smndc1	100	73.950	ENSSHAG00000015189	SMNDC1	100	73.950	Sarcophilus_harrisii
ENSPMGG00000015651	smndc1	100	77.215	ENSSFOG00015008311	smndc1	100	77.215	Scleropages_formosus
ENSPMGG00000015651	smndc1	100	82.353	ENSSMAG00000020118	smndc1	100	83.264	Scophthalmus_maximus
ENSPMGG00000015651	smndc1	100	82.773	ENSSDUG00000015330	smndc1	100	82.773	Seriola_dumerili
ENSPMGG00000015651	smndc1	100	82.773	ENSSLDG00000017325	smndc1	100	82.773	Seriola_lalandi_dorsalis
ENSPMGG00000015651	smndc1	100	73.950	ENSSARG00000006063	SMNDC1	100	73.950	Sorex_araneus
ENSPMGG00000015651	smndc1	100	73.950	ENSSPUG00000004574	SMNDC1	100	73.950	Sphenodon_punctatus
ENSPMGG00000015651	smndc1	100	82.353	ENSSPAG00000000338	smndc1	100	82.353	Stegastes_partitus
ENSPMGG00000015651	smndc1	100	73.529	ENSSSCG00000030507	SMNDC1	100	73.529	Sus_scrofa
ENSPMGG00000015651	smndc1	100	73.950	ENSTGUG00000010599	SMNDC1	100	74.370	Taeniopygia_guttata
ENSPMGG00000015651	smndc1	100	78.151	ENSTRUG00000023281	smndc1	100	78.151	Takifugu_rubripes
ENSPMGG00000015651	smndc1	100	80.672	ENSTNIG00000013331	smndc1	100	80.672	Tetraodon_nigroviridis
ENSPMGG00000015651	smndc1	100	73.529	ENSTBEG00000014337	SMNDC1	100	73.529	Tupaia_belangeri
ENSPMGG00000015651	smndc1	100	73.529	ENSUAMG00000008142	SMNDC1	100	73.529	Ursus_americanus
ENSPMGG00000015651	smndc1	100	73.529	ENSUMAG00000023722	SMNDC1	100	73.529	Ursus_maritimus
ENSPMGG00000015651	smndc1	83	72.222	ENSVPAG00000003402	SMNDC1	100	72.222	Vicugna_pacos
ENSPMGG00000015651	smndc1	100	73.529	ENSVVUG00000007820	SMNDC1	100	73.529	Vulpes_vulpes
ENSPMGG00000015651	smndc1	54	64.844	ENSXETG00000015415	SMNDC1	90	64.844	Xenopus_tropicalis
ENSPMGG00000015651	smndc1	100	82.627	ENSXCOG00000009159	smndc1	100	82.627	Xiphophorus_couchianus
ENSPMGG00000015651	smndc1	100	82.353	ENSXMAG00000012755	smndc1	100	82.353	Xiphophorus_maculatus